Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p14320 Brassica napus
A02p24230 Brassica napus
A02p26000 Brassica napus
A03p32000 Brassica napus
A09p27340 Brassica napus
Aa31LG5G240 Aethionema arabicum
Aa31LG9G10650 Aethionema arabicum
Actinidia02049 Actinidia chinensis
Actinidia27150 Actinidia chinensis
Actinidia30707 Actinidia chinensis
Actinidia33447 Actinidia chinensis
Ah.02g116430 Amaranthus hybridus
Ah.12g057650 Amaranthus hybridus
Ah.16g108930 Amaranthus hybridus
AL6G46490 Arabidopsis lyrata
AL6G52680 Arabidopsis lyrata
AL7G30500 Arabidopsis lyrata
Aqoxy7G00463 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea
AT4G00770 Arabidopsis thaliana
AT4G11780 Arabidopsis thaliana
AT4G23020 Arabidopsis thaliana
Atru.chr5.400 Acer truncatum
Atru.chr9.1537 Acer truncatum
AUR62010660 Chenopodium quinoa
AUR62017299 Chenopodium quinoa
BcaB01g01677 Brassica carinata
BcaB01g02155 Brassica carinata
BcaB03g11755 Brassica carinata
BcaB05g23809 Brassica carinata
BcaC01g06858 Brassica carinata
BcaC03g16329 Brassica carinata
BcaC09g51034 Brassica carinata
BcaNung01001 Brassica carinata
BolC2t09827H Brassica oleracea
BolC2t10166H Brassica oleracea
BolC3t16174H Brassica oleracea
BolC3t20745H Brassica oleracea
BolC9t56312H Brassica oleracea
BraA01t01377Z Brassica rapa
BraA02t07599Z Brassica rapa
BraA03t12372Z Brassica rapa
BraA09t38300Z Brassica rapa
C01p17640 Brassica napus
C02p41490 Brassica napus
C03p39020 Brassica napus
C03p84550 Brassica napus
C09p34660 Brassica napus
CAN.G170.54 Capsicum annuum
CAN.G981.38 Capsicum annuum
CANSAT21G2154 Cannabis sativa
CANSAT56G0238 Cannabis sativa
CARHR230080 Cardamine hirsuta
CARHR248960 Cardamine hirsuta
CARHR254530 Cardamine hirsuta
Carub.0006s3089 Capsella rubella
Carub.0006s3643 Capsella rubella
Carub.0007s1825 Capsella rubella
Ca_20242_v3 Cicer arietinum L.
Ca_23758_v3 Cicer arietinum L.
Ca_29496_v3 Cicer arietinum L.
Cc02_g37200 Coffea canephora
Cc08_g13950 Coffea canephora
Cfa004177 Carpinus fangiana
Ciclev10020246m.g Citrus clementina
Ciclev10023310m.g Citrus clementina
Ciclev10023936m.g Citrus clementina
CiPaw.02G024700 Carya illinoinensis
CiPaw.11G141500 Carya illinoinensis
CiPaw.12G098800 Carya illinoinensis
ClCG01G003130 Citrullus lanatus
ClCG05G001920 Citrullus lanatus
COL.COLO4_05272 Corchorus olitorius
COL.COLO4_06963 Corchorus olitorius
Cpa.g.c33531 Carica papaya
Cpa.g.sc74.83 Carica papaya
CsaV3_3G009320 Cucumis sativus L.
CsaV3_5G003260 Cucumis sativus L.
CSS0002536 Camellia sinensis var. sinensis
CSS0040991 Camellia sinensis var. sinensis
DCAR_006762 Daucus carota
DCAR_006904 Daucus carota
DCAR_008585 Daucus carota
Dinv37695 Davidia involucrata
Dinv39013 Davidia involucrata
Dinv43754 Davidia involucrata
Duzib084G1184 Durio zibethinus
Duzib133G0091 Durio zibethinus
Duzib138G0317 Durio zibethinus
Duzib205G0359 Durio zibethinus
ECA233G2885 Erigeron canadensis
ECA236G0338 Erigeron canadensis
ECA246G0913 Erigeron canadensis
EL10Ac1g00967 Beta vulgaris
Eucgr.E00281 Eucalyptus grandis
Eucgr.E00527 Eucalyptus grandis
FAN01G0110 Fragaria x ananassa
FAN06G3334 Fragaria x ananassa
FAN06G4128 Fragaria x ananassa
FAN10G0205 Fragaria x ananassa
FAN10G1938 Fragaria x ananassa
FvH4_5g01430 Fragaria vesca
FvH4_7g12980 Fragaria vesca
Glyma.01G215900 Glycine max
Glyma.03G017800 Glycine max
Glyma.05G050000 Glycine max
Glyma.07G079500 Glycine max
Glyma.17G132000 Glycine max
Gohir.A08G129200 Gossypium hirsutum
Gohir.A08G178500 Gossypium hirsutum
Gohir.A12G224700 Gossypium hirsutum
Gohir.D08G150500 Gossypium hirsutum
Gohir.D08G197000 Gossypium hirsutum
Gohir.D12G227500 Gossypium hirsutum
Gorai.004G156200 Gossypium raimondii
Gorai.004G207700 Gossypium raimondii
Gorai.008G243500 Gossypium raimondii
GSVIVG01019863001 Vitis vinifera
GSVIVG01027598001 Vitis vinifera
HanXRQChr06g0168991 Helianthus annuus
HanXRQChr07g0188421 Helianthus annuus
Haze_08955 Corylus avellana
Haze_15232 Corylus avellana
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla
HPP92_022149 Vanilla planifolia
Hund16963 Selenicereus undatus
Hund28360 Selenicereus undatus
Hund28364 Selenicereus undatus
Lalb_Chr05g0225091 Lupinus albus
Lalb_Chr10g0097561 Lupinus albus
Lalb_Chr16g0379981 Lupinus albus
Lj2A196T48 Lonicera japonica
Lj2C196G7 Lonicera japonica
Lj3g0026127 Lotus japonicus
Lj4g0001816 Lotus japonicus
Lsat_1_v5_gn_6_13021 Lactuca sativa
Lsat_1_v5_gn_7_8261 Lactuca sativa
Manes.01G067700 Manihot esculenta
Manes.01G262800 Manihot esculenta
Manes.02G027900 Manihot esculenta
Manes.05G040400 Manihot esculenta
MBI04_g42596_MAGBIO Magnolia biondii
MBI12_g11809_MAGBIO Magnolia biondii
MD01G1047600 Malus domestica
MD04G1068300 Malus domestica
MD07G1125600 Malus domestica
Medtr4g102650 Medicago truncatula
Medtr8g032770 Medicago truncatula
MELO3C005628.2 Cucumis melo
MELO3C006152.2 Cucumis melo
Migut.A00919 Erythranthe guttata
Migut.B01683 Erythranthe guttata
Migut.E01299 Erythranthe guttata
MSTRG.20788 Avicennia marina
MSTRG.25572 Avicennia marina
Nitab4.5_0000134g0230 Nicotiana tabacum
Nitab4.5_0001714g0160 Nicotiana tabacum
Nitab4.5_0003356g0060 Nicotiana tabacum
Nitab4.5_0004550g0040 Nicotiana tabacum
Nitab4.5_0010430g0070 Nicotiana tabacum
Nitab4.5_0011100g0010 Nicotiana tabacum
Nn1g01342 Nelumbo nucifera
Nn6g34271 Nelumbo nucifera
Oeu024421.1 Olea europaea
Oeu024422.1 Olea europaea
Oeu059227.1 Olea europaea
Oeu059228.1 Olea europaea
Oeu062354.1 Olea europaea
Oeu062355.1 Olea europaea
Peaxi162Scf00021g00041 Petunia axillaris
Peaxi162Scf00233g00015 Petunia axillaris
Peaxi162Scf00714g00621 Petunia axillaris
PGR042G2435 Punica granatum
PGR042G2476 Punica granatum
PGSC0003DMG400017053 Solanum tuberosum
PGSC0003DMG400022757 Solanum tuberosum
Phvul.003G212900 Phaseolus vulgaris
Phvul.010G089700 Phaseolus vulgaris
Potri.001G110900 Populus trichocarpa
Potri.002G152700 Populus trichocarpa
Potri.003G121100 Populus trichocarpa
Potri.014G077400 Populus trichocarpa
Prupe.2G153900 Prunus persica
Prupe.5G089800 Prunus persica
Psat4g067560 Pisum sativum
Psat4g151680 Pisum sativum
PSO478G2989 Papaver somniferum
PSO782G0819 Papaver somniferum
QL08p050716 Quercus lobata
QL12p017099 Quercus lobata
RcHm_v2.0_Chr1g0352121 Rosa chinensis
RcHm_v2.0_Chr7g0199421 Rosa chinensis
Sabra01G0084500 Salix brachista
Sabra02G0121100 Salix brachista
Sabra03G0085100 Salix brachista
Sabra14G0054900 Salix brachista
SalBow3G1388 Salvia bowleyana
Sc01g0008790 Simmondsia chinensis
Sed0005409 Sechium edule
Sed0021237 Sechium edule
SGA_v2.0_scaffold153G37063 Striga asiatica
SGA_v2.0_scaffold196G40889 Striga asiatica
SGA_v2.0_scaffold286G47104 Striga asiatica
Solyc01g091830.3 Solanum lycopersicum
Solyc08g080280.3 Solanum lycopersicum
Sopen01g037600 Solanum pennellii
Sopen08g028630 Solanum pennellii
Sp6g00770 Schrenkiella parvula
Sp6g05680 Schrenkiella parvula
Sp7g21110 Schrenkiella parvula
TAR629G3293 Trochodendron aralioides
THA.LOC104801463 Tarenaya hassleriana
THA.LOC104806370 Tarenaya hassleriana
Thecc.01G369200 Theobroma cacao
Thecc.03G270800 Theobroma cacao
Thhalv10025169m.g Eutrema salsugineum
Thhalv10028604m.g Eutrema salsugineum
Thhalv10029270m.g Eutrema salsugineum
TPR.G37675 Trifolium pratense
TWI14G0163 Tripterygium wilfordii
TWI59G0633 Tripterygium wilfordii
TWI60G0323 Tripterygium wilfordii
TWI81G0253 Tripterygium wilfordii
unitig_744.g24328 Utricularia gibba
vmacro20976 Vaccinium macrocarpon
VMungo0331G1467 Vigna mungo
VMungo1215G3066 Vigna mungo

User provided reference genes

Program Settings