Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p25300 Brassica napus
A03p30160 Brassica napus
A08p31510 Brassica napus
A09p26160 Brassica napus
Aa31LG7G330 Aethionema arabicum
Aa31LG9G9750 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.656 Anthoceros agrestis
Actinidia05514 Actinidia chinensis
Actinidia10738 Actinidia chinensis
Actinidia35347 Actinidia chinensis
Actinidia35348 Actinidia chinensis
Ah.04g165920 Amaranthus hybridus
Ah.09g234900 Amaranthus hybridus
AL1G27810 Arabidopsis lyrata
AL6G48110 Arabidopsis lyrata
Aqoxy1G02146 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B1KDZW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F6CLKD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KSV0XM Arachis hypogaea
AT1G15700 Arabidopsis thaliana
AT4G04640 Arabidopsis thaliana
ATR0794G024 Amborella trichopoda
Atru.chr10.2230 Acer truncatum
Atru.chr2.3445 Acer truncatum
AUR62012710 Chenopodium quinoa
AUR62015783 Chenopodium quinoa
AUR62020434 Chenopodium quinoa
AUR62021944 Chenopodium quinoa
BcaB01g01828 Brassica carinata
BcaB01g02577 Brassica carinata
BcaB03g14528 Brassica carinata
BcaC03g16238 Brassica carinata
BcaC04g21318 Brassica carinata
BcaC07g41485 Brassica carinata
BolC2t10043H Brassica oleracea
BolC3t15952H Brassica oleracea
BolC8t49354H Brassica oleracea
BolC9t56153H Brassica oleracea
BraA02t07517Z Brassica rapa
BraA03t12200Z Brassica rapa
BraA08t35073Z Brassica rapa
BraA09t38182Z Brassica rapa
C02p40140 Brassica napus
C03p36390 Brassica napus
C08p17280 Brassica napus
C09p33190 Brassica napus
CAN.G1124.9 Capsicum annuum
CAN.G1370.2 Capsicum annuum
CAN.G569.8 Capsicum annuum
CANSAT56G0831 Cannabis sativa
CARHR016190 Cardamine hirsuta
CARHR252890 Cardamine hirsuta
Carub.0001s1547 Capsella rubella
Carub.0006s3249 Capsella rubella
Ca_00661_v3 Cicer arietinum L.
Ca_14736_v3 Cicer arietinum L.
CBR_g1070 Chara braunii
Cc05_g13860 Coffea canephora
Cc09_g01650 Coffea canephora
CDE05G0480 Ceratophyllum demersum
Cfa000219 Carpinus fangiana
Cfa020335 Carpinus fangiana
Ciclev10008444m.g Citrus clementina
Ciclev10015680m.g Citrus clementina
CiPaw.09G092200 Carya illinoinensis
CiPaw.10G071300 Carya illinoinensis
CiPaw.11G190400 Carya illinoinensis
ClCG01G021980 Citrullus lanatus
ClCG03G004720 Citrullus lanatus
ClCG10G005390 Citrullus lanatus
COL.COLO4_07982 Corchorus olitorius
COL.COLO4_31778 Corchorus olitorius
Cpa.g.sc12.299 Carica papaya
Cpa.g.sc152.16 Carica papaya
Cre06.g259900 Chlamydomonas reinhardtii
CsaV3_1G010750 Cucumis sativus L.
CsaV3_3G005120 Cucumis sativus L.
CsaV3_6G049050 Cucumis sativus L.
CSS0000198 Camellia sinensis var. sinensis
CSS0000656 Camellia sinensis var. sinensis
CSS0025453 Camellia sinensis var. sinensis
CSS0030453 Camellia sinensis var. sinensis
DCAR_004220 Daucus carota
Dinv06274 Davidia involucrata
Dinv13895 Davidia involucrata
Dinv40762 Davidia involucrata
Duzib192G0791 Durio zibethinus
Duzib213G0197 Durio zibethinus
Duzib235G1137 Durio zibethinus
ECA236G1957 Erigeron canadensis
ECA247G2754 Erigeron canadensis
EL10Ac4g07799 Beta vulgaris
EL10Ac8g20058 Beta vulgaris
Eucgr.E04053 Eucalyptus grandis
Eucgr.F00755 Eucalyptus grandis
FAN11G3639 Fragaria x ananassa
FAN16G1452 Fragaria x ananassa
FAN21G2816 Fragaria x ananassa
FAN25G2171 Fragaria x ananassa
FvH4_3g02060 Fragaria vesca
FvH4_3g22880 Fragaria vesca
Glyma.08G317100 Glycine max
Glyma.13G204800 Glycine max
Glyma.15G107900 Glycine max
Gohir.A01G080200 Gossypium hirsutum
Gohir.A06G148300 Gossypium hirsutum
Gohir.D01G067400 Gossypium hirsutum
Gohir.D06G154200 Gossypium hirsutum
Gohir.D10G012350 Gossypium hirsutum
Gorai.002G089300 Gossypium raimondii
Gorai.010G180300 Gossypium raimondii
Gorai.011G013900 Gossypium raimondii
HanXRQChr02g0045001 Helianthus annuus
HanXRQChr05g0129501 Helianthus annuus
HanXRQChr15g0470661 Helianthus annuus
Haze_06801 Corylus avellana
Haze_09684 Corylus avellana
HPP92_015982 Vanilla planifolia
Lalb_Chr15g0087611 Lupinus albus
Lalb_Chr18g0050071 Lupinus albus
Lalb_Chr20g0118651 Lupinus albus
Lj1g0002081 Lotus japonicus
Lj2P268T28 Lonicera japonica
Lj6g0002508 Lotus japonicus
Lj6g0003698 Lotus japonicus
Lj8P170T23 Lonicera japonica
Lsat_1_v5_gn_1_4360 Lactuca sativa
Lsat_1_v5_gn_7_16100 Lactuca sativa
Manes.15G071200 Manihot esculenta
Manes.16G007000 Manihot esculenta
Mapoly0206s0012 Marchantia polymorpha
MBI02_g21869_MAGBIO Magnolia biondii
MCO07G665 Micromonas commoda
MD05G1347300 Malus domestica
MD06G1240800 Malus domestica
MD10G1321500 Malus domestica
MD11G1216600 Malus domestica
Medtr1588s0010 Medicago truncatula
Medtr2g023290 Medicago truncatula
Medtr3g052270 Medicago truncatula
MELO3C002456.2 Cucumis melo
MELO3C007390.2 Cucumis melo
MELO3C025376.2 Cucumis melo
Migut.H01823 Erythranthe guttata
Migut.M01319 Erythranthe guttata
MSTRG.12977 Avicennia marina
MSTRG.13140 Avicennia marina
Nitab4.5_0000005g0380 Nicotiana tabacum
Nitab4.5_0000981g0030 Nicotiana tabacum
Nitab4.5_0002827g0010 Nicotiana tabacum
Nitab4.5_0004275g0020 Nicotiana tabacum
Nitab4.5_0007084g0010 Nicotiana tabacum
Nitab4.5_0010103g0010 Nicotiana tabacum
Nitab4.5_0010502g0010 Nicotiana tabacum
Oeu051209.1 Olea europaea
Os07g0513000 Oryza sativa ssp. japonica
Peaxi162Scf00331g01126 Petunia axillaris
Peaxi162Scf00660g00052 Petunia axillaris
Peaxi162Scf01102g00015 Petunia axillaris
PGR004G0909 Punica granatum
PGR083G0161 Punica granatum
PGSC0003DMG400016482 Solanum tuberosum
PGSC0003DMG400027875 Solanum tuberosum
Phvul.006G044600 Phaseolus vulgaris
Phvul.006G149700 Phaseolus vulgaris
Potri.004G014850 Populus trichocarpa
Potri.011G003800 Populus trichocarpa
Potri.011G024700 Populus trichocarpa
Pp3c12_24970 Physcomitrium patens
Pp3c4_3490 Physcomitrium patens
Pp3c8_3520 Physcomitrium patens
PRCOL_00003326 Prasinoderma coloniale
Prupe.4G020800 Prunus persica
Prupe.4G214800 Prunus persica
Psat3g207840 Pisum sativum
Psat5g178400 Pisum sativum
PSO210G3656 Papaver somniferum
PSO832G2705 Papaver somniferum
QL05p073129 Quercus lobata
QL08p009950 Quercus lobata
RcHm_v2.0_Chr5g0002961 Rosa chinensis
RcHm_v2.0_Chr5g0040181 Rosa chinensis
Rhsim13G0154000 Rhododendron simsii
RhsimUnG0249800 Rhododendron simsii
Sabra04G0007200 Salix brachista
Sabra11G0002400 Salix brachista
Sabra11G0002800 Salix brachista
Sabra11G0015400 Salix brachista
Sabra11G0021100 Salix brachista
SalBow8G3545 Salvia bowleyana
Sc05g0009160 Simmondsia chinensis
Sc05g0009170 Simmondsia chinensis
Sc05g0009230 Simmondsia chinensis
Sc05g0009940 Simmondsia chinensis
Sc16g0005980 Simmondsia chinensis
Sed0006102 Sechium edule
Sed0013732 Sechium edule
Sed0024659 Sechium edule
SEGI_20692 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08542 Striga asiatica
SGA_v2.0_scaffold7G03839 Striga asiatica
SMO367G0901 Selaginella moellendorffii
Solyc02g080540.1 Solanum lycopersicum
Solyc12g005060.1 Solanum lycopersicum
Sopen02g025240 Solanum pennellii
Sopen12g001060 Solanum pennellii
Sp1g14000 Schrenkiella parvula
Sp6g04240 Schrenkiella parvula
TAR625G0596 Trochodendron aralioides
TAR627G0435 Trochodendron aralioides
THA.LOC104808203 Tarenaya hassleriana
THA.LOC104818017 Tarenaya hassleriana
Thecc.06G220700 Theobroma cacao
Thecc.07G035300 Theobroma cacao
Thhalv10007892m.g Eutrema salsugineum
Thhalv10029134m.g Eutrema salsugineum
TPR.G13576 Trifolium pratense
TPR.G33789 Trifolium pratense
TPR.G9936 Trifolium pratense
TWI38G0992 Tripterygium wilfordii
TWI38G1146 Tripterygium wilfordii
TWI63G1627 Tripterygium wilfordii
unitig_52.g17548 Utricularia gibba
unitig_62.g23518 Utricularia gibba
VMungo0540G1725 Vigna mungo
VMungo0540G1969 Vigna mungo
Zm00001eb060080 Zea mays
Zm00001eb105860 Zea mays
Zm00001eb161180 Zea mays
Zm00001eb322600 Zea mays
Zm00001eb349790 Zea mays

User provided reference genes

Program Settings