Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p06720 Brassica napus
A06p26890 Brassica napus
Aa31LG10G7750 Aethionema arabicum
Aa31LG4G13910 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.476 Anthoceros agrestis
Actinidia05434 Actinidia chinensis
Actinidia07928 Actinidia chinensis
AL5G22550 Arabidopsis lyrata
AL5G33500 Arabidopsis lyrata
Aqoxy1G03907 Aquilegia oxysepala
Aqoxy4G02781 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2VK3FY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.36VPXF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4E80DN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T13AP3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V363MI Arachis hypogaea
AT3G44450 Arabidopsis thaliana
AT3G52740 Arabidopsis thaliana
ATR0016G013 Amborella trichopoda
Atru.chr3.3250 Acer truncatum
Atru.chr8.1547 Acer truncatum
BcaB01g00345 Brassica carinata
BcaB02g07819 Brassica carinata
BcaB02g08556 Brassica carinata
BcaB02g10753 Brassica carinata
BcaC02g09225 Brassica carinata
BcaC07g39639 Brassica carinata
BolC4t25597H Brassica oleracea
BolC8t50414H Brassica oleracea
BraA04t16376Z Brassica rapa
BraA06t25624Z Brassica rapa
BraA09t40044Z Brassica rapa
C04p40200 Brassica napus
C08p28020 Brassica napus
CAN.G1358.13 Capsicum annuum
CANSAT54G2951 Cannabis sativa
CANSAT78G1472 Cannabis sativa
CANSAT80G2111 Cannabis sativa
CARHR104470 Cardamine hirsuta
CARHR162610 Cardamine hirsuta
Carub.0005s1012 Capsella rubella
Carub.0005s1919 Capsella rubella
Ca_01661_v3 Cicer arietinum L.
Ca_09002_v3 Cicer arietinum L.
Cc01_g09270 Coffea canephora
Cc06_g05710 Coffea canephora
CDE02G3769 Ceratophyllum demersum
CDE04G3229 Ceratophyllum demersum
Cfa016604 Carpinus fangiana
Ciclev10012842m.g Citrus clementina
Ciclev10029406m.g Citrus clementina
CiPaw.09G013500 Carya illinoinensis
CiPaw.10G009300 Carya illinoinensis
ClCG02G022130 Citrullus lanatus
ClCG04G010040 Citrullus lanatus
ClCG10G019000 Citrullus lanatus
COL.COLO4_19881 Corchorus olitorius
COL.COLO4_29740 Corchorus olitorius
Cpa.g.sc5.23 Carica papaya
CsaV3_3G037250 Cucumis sativus L.
CsaV3_6G014970 Cucumis sativus L.
CsaV3_6G040680 Cucumis sativus L.
CSS0036986 Camellia sinensis var. sinensis
DCAR_009161 Daucus carota
DCAR_013383 Daucus carota
DCAR_020751 Daucus carota
Dinv21212 Davidia involucrata
Dinv29481 Davidia involucrata
Dinv31683 Davidia involucrata
Dinv42556 Davidia involucrata
Duzib093G0696 Durio zibethinus
Duzib106G1893 Durio zibethinus
Duzib128G1708 Durio zibethinus
Duzib150G0794 Durio zibethinus
Duzib168G2399 Durio zibethinus
ECA247G2832 Erigeron canadensis
ECA248G0425 Erigeron canadensis
EL10Ac7g16920 Beta vulgaris
Eucgr.B03851 Eucalyptus grandis
Eucgr.E02817 Eucalyptus grandis
Eucgr.K02045 Eucalyptus grandis
FAN02G2601 Fragaria x ananassa
FAN05G3027 Fragaria x ananassa
FAN05G5184 Fragaria x ananassa
FAN11G0501 Fragaria x ananassa
FAN14G2272 Fragaria x ananassa
FAN16G2298 Fragaria x ananassa
FAN21G3923 Fragaria x ananassa
FvH4_3g24891 Fragaria vesca
FvH4_6g18630 Fragaria vesca
Glyma.03G195300 Glycine max
Glyma.10G072000 Glycine max
Glyma.12G184800 Glycine max
Glyma.13G153400 Glycine max
Glyma.13G316500 Glycine max
Glyma.19G194900 Glycine max
Gohir.1Z049556 Gossypium hirsutum
Gohir.A01G206600 Gossypium hirsutum
Gohir.A04G063385 Gossypium hirsutum
Gohir.A05G081100 Gossypium hirsutum
Gohir.D01G196000 Gossypium hirsutum
Gohir.D04G100100 Gossypium hirsutum
Gohir.D05G084100 Gossypium hirsutum
Gorai.002G240200 Gossypium raimondii
Gorai.009G085900 Gossypium raimondii
Gorai.009G403000 Gossypium raimondii
HanXRQChr01g0001961 Helianthus annuus
HanXRQChr02g0044431 Helianthus annuus
HanXRQChr05g0133241 Helianthus annuus
HanXRQChr08g0229911 Helianthus annuus
HanXRQChr13g0399081 Helianthus annuus
Haze_19606 Corylus avellana
Hma1.2p1_0084F.1_g043760 Hydrangea macrophylla
Hma1.2p1_0232F.1_g097870 Hydrangea macrophylla
Hma1.2p1_0578F.1_g182490 Hydrangea macrophylla
HPP92_006353 Vanilla planifolia
Lalb_Chr01g0018161 Lupinus albus
Lalb_Chr02g0154951 Lupinus albus
Lalb_Chr14g0376051 Lupinus albus
Lalb_Chr20g0111741 Lupinus albus
Lj1g0014395 Lotus japonicus
Lj2C136T8 Lonicera japonica
Lj2C136T9 Lonicera japonica
Lj3g0006810 Lotus japonicus
Lj3P997T43 Lonicera japonica
Lj5g0015488 Lotus japonicus
Lsat_1_v5_gn_5_164760 Lactuca sativa
Lsat_1_v5_gn_8_77040 Lactuca sativa
Lsat_1_v5_gn_9_20540 Lactuca sativa
Manes.04G003600 Manihot esculenta
Manes.08G024900 Manihot esculenta
Manes.09G055700 Manihot esculenta
Manes.11G161700 Manihot esculenta
MBI17_g08360_MAGBIO Magnolia biondii
MD00G1073200 Malus domestica
MD03G1143800 Malus domestica
MD12G1035800 Malus domestica
MD14G1022500 Malus domestica
Medtr1g059990 Medicago truncatula
Medtr2g086480 Medicago truncatula
Medtr3g009390 Medicago truncatula
Medtr4g115590 Medicago truncatula
Medtr7g104540 Medicago truncatula
MELO3C009470.2 Cucumis melo
MELO3C021428.2 Cucumis melo
MELO3C024545.2 Cucumis melo
Migut.J01042 Erythranthe guttata
Migut.L01776 Erythranthe guttata
MSTRG.10363 Avicennia marina
MSTRG.19258 Avicennia marina
MSTRG.26640 Avicennia marina
MSTRG.5843 Avicennia marina
Nitab4.5_0000755g0190 Nicotiana tabacum
Nitab4.5_0001977g0010 Nicotiana tabacum
Nitab4.5_0004069g0020 Nicotiana tabacum
Nitab4.5_0009459g0030 Nicotiana tabacum
Nn1g07074 Nelumbo nucifera
Nn2g14154 Nelumbo nucifera
Nn4g23122 Nelumbo nucifera
Nn6g34032 Nelumbo nucifera
Nn6g34905 Nelumbo nucifera
Oeu039078.1 Olea europaea
Os02g0532800 Oryza sativa ssp. japonica
Os04g0412100 Oryza sativa ssp. japonica
Peaxi162Scf00003g00510 Petunia axillaris
Peaxi162Scf00290g00064 Petunia axillaris
PGR004G2629 Punica granatum
PGR102G0102 Punica granatum
PGSC0003DMG400002662 Solanum tuberosum
PGSC0003DMG400026362 Solanum tuberosum
PGSC0003DMG400026363 Solanum tuberosum
Phvul.001G189900 Phaseolus vulgaris
Phvul.005G123800 Phaseolus vulgaris
Phvul.007G227500 Phaseolus vulgaris
Potri.004G202900 Populus trichocarpa
Potri.004G203000 Populus trichocarpa
Potri.009G163900 Populus trichocarpa
Potri.009G164000 Populus trichocarpa
Prupe.6G129600 Prunus persica
Prupe.7G110700 Prunus persica
Psat3g033520 Pisum sativum
Psat5g257360 Pisum sativum
Psat6g081160 Pisum sativum
PSO339G3111 Papaver somniferum
PSO384G0091 Papaver somniferum
PSO384G1229 Papaver somniferum
QL01p012303 Quercus lobata
QL07p038814 Quercus lobata
QL07p039076 Quercus lobata
RcHm_v2.0_Chr3g0473581 Rosa chinensis
RcHm_v2.0_Chr5g0044531 Rosa chinensis
Rhsim03G0075700 Rhododendron simsii
Sabra09G0128200 Salix brachista
Sabra09G0128300 Salix brachista
SalBow3G4581 Salvia bowleyana
SalBow5G0041 Salvia bowleyana
Sc20g0006270 Simmondsia chinensis
Sed0008713 Sechium edule
Sed0010508 Sechium edule
Sed0013825 Sechium edule
Sed0027558 Sechium edule
SEGI_39196 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06720 Striga asiatica
Solyc09g009420.1 Solanum lycopersicum
Solyc11g068380.1 Solanum lycopersicum
Solyc11g068390.1 Solanum lycopersicum
Sopen09g004160 Solanum pennellii
Sopen11g027100 Solanum pennellii
Sopen11g027110 Solanum pennellii
Sp5g09590 Schrenkiella parvula
Sp5g16790 Schrenkiella parvula
TAR633G0958 Trochodendron aralioides
TAR636G0942 Trochodendron aralioides
THA.LOC104804934 Tarenaya hassleriana
THA.LOC104810919 Tarenaya hassleriana
THA.LOC104827509 Tarenaya hassleriana
Thecc.05G088600 Theobroma cacao
Thecc.09G283900 Theobroma cacao
Thhalv10010806m.g Eutrema salsugineum
Thhalv10011075m.g Eutrema salsugineum
TPR.G19528 Trifolium pratense
TPR.G34930 Trifolium pratense
TPR.G6026 Trifolium pratense
TWI53G1371 Tripterygium wilfordii
TWI74G0300 Tripterygium wilfordii
TWI79G0898 Tripterygium wilfordii
unitig_578.g16374 Utricularia gibba
VMungo1080G0297 Vigna mungo
VMungo1383G3159 Vigna mungo
Zm00001eb083970 Zea mays
Zm00001eb242760 Zea mays
Zm00001eb421910 Zea mays

User provided reference genes

Program Settings