Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p03600 Brassica napus
A04p22990 Brassica napus
A06p34520 Brassica napus
A06p35010 Brassica napus
A09p01420 Brassica napus
A09p06880 Brassica napus
Aa31LG11G2960 Aethionema arabicum
Aa31LG11G3440 Aethionema arabicum
Actinidia34210 Actinidia chinensis
Actinidia36576 Actinidia chinensis
Ah.02g118540 Amaranthus hybridus
Ah.07g205850 Amaranthus hybridus
AL6G34830 Arabidopsis lyrata
AL6G35570 Arabidopsis lyrata
Aqoxy5G01844 Aquilegia oxysepala
Aqoxy7G00098 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1SSJ6X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.92FM5P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9IQG37 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DB37YY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LV4DQW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P2ZTC5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QG5CGN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z9R8EV Arachis hypogaea
AT5G23550 Arabidopsis thaliana
AT5G24170 Arabidopsis thaliana
ATR0602G101 Amborella trichopoda
ATR1089G145 Amborella trichopoda
Atru.chr1.151 Acer truncatum
Atru.chr3.1450 Acer truncatum
AUR62000607 Chenopodium quinoa
AUR62006112 Chenopodium quinoa
AUR62006958 Chenopodium quinoa
AUR62019376 Chenopodium quinoa
BcaB04g19860 Brassica carinata
BcaC03g15891 Brassica carinata
BcaC04g23503 Brassica carinata
BcaNung01215 Brassica carinata
BcaNung01807 Brassica carinata
BolC7t44881H Brassica oleracea
BolC7t44927H Brassica oleracea
BolC9t53678H Brassica oleracea
BraA01t00074Z Brassica rapa
BraA06t26380Z Brassica rapa
BraA06t26424Z Brassica rapa
BraA09t36335Z Brassica rapa
BraA09t37093Z Brassica rapa
C07p43540 Brassica napus
C07p44030 Brassica napus
C09p07610 Brassica napus
CAN.G108.63 Capsicum annuum
CAN.G66.5 Capsicum annuum
CANSAT21G1750 Cannabis sativa
CANSAT54G0177 Cannabis sativa
CARHR189340 Cardamine hirsuta
CARHR189940 Cardamine hirsuta
Carub.0006s2133 Capsella rubella
Carub.0006s2192 Capsella rubella
Ca_12727_v3 Cicer arietinum L.
Ca_25249_v3 Cicer arietinum L.
CBR_g17698 Chara braunii
Cc00_g14800 Coffea canephora
Cc02_g01690 Coffea canephora
CDE02G1315 Ceratophyllum demersum
CDE02G1782 Ceratophyllum demersum
CDE08G0486 Ceratophyllum demersum
Cfa016253 Carpinus fangiana
Cfa020925 Carpinus fangiana
Ciclev10006104m.g Citrus clementina
Ciclev10026599m.g Citrus clementina
CiPaw.05G252000 Carya illinoinensis
CiPaw.15G185200 Carya illinoinensis
ClCG02G000170 Citrullus lanatus
ClCG05G008850 Citrullus lanatus
ClCG10G008190 Citrullus lanatus
COL.COLO4_11260 Corchorus olitorius
COL.COLO4_33525 Corchorus olitorius
Cpa.g.sc3.66 Carica papaya
Cre12.g549950 Chlamydomonas reinhardtii
CsaV3_2G019650 Cucumis sativus L.
CsaV3_3G027890 Cucumis sativus L.
CSS0028838 Camellia sinensis var. sinensis
CSS0028941 Camellia sinensis var. sinensis
DCAR_009621 Daucus carota
Dinv03907 Davidia involucrata
Dinv35323 Davidia involucrata
Duzib068G0658 Durio zibethinus
Duzib147G0755 Durio zibethinus
Duzib187G1900 Durio zibethinus
ECA232G3809 Erigeron canadensis
ECA233G4996 Erigeron canadensis
EL10Ac3g05302 Beta vulgaris
EL10Ac4g09731 Beta vulgaris
Eucgr.A01469 Eucalyptus grandis
Eucgr.I00021 Eucalyptus grandis
FAN01G2740 Fragaria x ananassa
FAN03G0869 Fragaria x ananassa
FAN06G1762 Fragaria x ananassa
FAN06G2503 Fragaria x ananassa
FAN10G1681 Fragaria x ananassa
FAN10G3925 Fragaria x ananassa
FAN19G0921 Fragaria x ananassa
FAN23G2676 Fragaria x ananassa
FAN26G1963 Fragaria x ananassa
FAN28G1383 Fragaria x ananassa
FvH4_1g25890 Fragaria vesca
FvH4_7g31760 Fragaria vesca
Glyma.09G156800 Glycine max
Glyma.16G207600 Glycine max
Glyma.19G065700 Glycine max
Gohir.A10G155700 Gossypium hirsutum
Gohir.A11G014300 Gossypium hirsutum
Gohir.D10G109700 Gossypium hirsutum
Gohir.D11G014500 Gossypium hirsutum
Gorai.007G014900 Gossypium raimondii
Gorai.011G120800 Gossypium raimondii
GSVIVG01000249001 Vitis vinifera
GSVIVG01038712001 Vitis vinifera
HanXRQChr09g0253011 Helianthus annuus
HanXRQChr12g0381771 Helianthus annuus
Haze_00187 Corylus avellana
Haze_19358 Corylus avellana
Hma1.2p1_0050F.1_g029060 Hydrangea macrophylla
Hma1.2p1_1188F.1_g265240 Hydrangea macrophylla
HPP92_016116 Vanilla planifolia
Hund04855 Selenicereus undatus
Hund07188 Selenicereus undatus
Lalb_Chr03g0033301 Lupinus albus
Lalb_Chr19g0131401 Lupinus albus
Lalb_Chr22g0352161 Lupinus albus
Lj1g0025682 Lotus japonicus
Lj2g0002491 Lotus japonicus
Lj3P907T15 Lonicera japonica
Lj4A822T44 Lonicera japonica
Lsat_1_v5_gn_5_71580 Lactuca sativa
Lsat_1_v5_gn_9_58281 Lactuca sativa
Manes.06G159500 Manihot esculenta
Manes.13G153900 Manihot esculenta
Manes.14G006700 Manihot esculenta
Mapoly0022s0162 Marchantia polymorpha
MBI06_g08465_MAGBIO Magnolia biondii
MCO15G703 Micromonas commoda
MD01G1219600 Malus domestica
MD15G1140900 Malus domestica
Medtr1g026920 Medicago truncatula
Medtr6g064950 Medicago truncatula
MELO3C008483.2 Cucumis melo
MELO3C023206.2 Cucumis melo
Migut.F00227 Erythranthe guttata
Migut.H02546 Erythranthe guttata
MSTRG.23233 Avicennia marina
MSTRG.8666 Avicennia marina
Nitab4.5_0000466g0020 Nicotiana tabacum
Nitab4.5_0000466g0030 Nicotiana tabacum
Nitab4.5_0000714g0100 Nicotiana tabacum
Nitab4.5_0001785g0020 Nicotiana tabacum
Nitab4.5_0001785g0030 Nicotiana tabacum
Nitab4.5_0002492g0050 Nicotiana tabacum
Nn1g01870 Nelumbo nucifera
Nn5g27159 Nelumbo nucifera
Oeu041319.1 Olea europaea
Oeu046364.1 Olea europaea
Os01g0219100 Oryza sativa ssp. japonica
Os02g0564500 Oryza sativa ssp. japonica
Peaxi162Scf00550g00534 Petunia axillaris
Peaxi162Scf00577g00315 Petunia axillaris
Peaxi162Scf00577g00316 Petunia axillaris
PGR042G2794 Punica granatum
PGR119G1226 Punica granatum
PGSC0003DMG400014119 Solanum tuberosum
Phvul.001G078100 Phaseolus vulgaris
Phvul.004G132100 Phaseolus vulgaris
Potri.004G135000 Populus trichocarpa
Potri.012G012700 Populus trichocarpa
Potri.015G017300 Populus trichocarpa
PRCOL_00002877 Prasinoderma coloniale
PRCOL_00006147 Prasinoderma coloniale
Prupe.2G311600 Prunus persica
Prupe.4G288900 Prunus persica
Psat1g113520 Pisum sativum
Psat6g035800 Pisum sativum
PSO063G7184 Papaver somniferum
PSO170G2006 Papaver somniferum
PSO210G6138 Papaver somniferum
PSO447G0091 Papaver somniferum
QL09p009532 Quercus lobata
QL10p037816 Quercus lobata
RcHm_v2.0_Chr1g0380991 Rosa chinensis
RcHm_v2.0_Chr3g0485031 Rosa chinensis
Rhsim03G0207600 Rhododendron simsii
Rhsim08G0143900 Rhododendron simsii
Sabra04G0083000 Salix brachista
Sabra15G0013300 Salix brachista
SalBow4G2345 Salvia bowleyana
SalBow4G2829 Salvia bowleyana
SalBow8G3179 Salvia bowleyana
Sc13g0009770 Simmondsia chinensis
Sc16g0009900 Simmondsia chinensis
Sed0015989 Sechium edule
Sed0020986 Sechium edule
SEGI_18670 Sequoiadendron giganteum
SGA_v2.0_scaffold44G16787 Striga asiatica
SGA_v2.0_scaffold51G18850 Striga asiatica
SMO201G0107 Selaginella moellendorffii
SMO364G0693 Selaginella moellendorffii
Solyc03g117000.3 Solanum lycopersicum
Solyc04g047670.2 Solanum lycopersicum
Solyc04g047690.4 Solanum lycopersicum
Sopen03g035900 Solanum pennellii
Sopen04g017740 Solanum pennellii
Sp2g23140 Schrenkiella parvula
Sp2g23640 Schrenkiella parvula
TAR381G0708 Trochodendron aralioides
TAR629G0201 Trochodendron aralioides
THA.LOC104800518 Tarenaya hassleriana
THA.LOC104821370 Tarenaya hassleriana
Thecc.01G146100 Theobroma cacao
Thecc.03G196000 Theobroma cacao
Thhalv10005010m.g Eutrema salsugineum
Thhalv10005042m.g Eutrema salsugineum
TPR.G20018 Trifolium pratense
TPR.G5840 Trifolium pratense
TWI14G0296 Tripterygium wilfordii
TWI23G0005 Tripterygium wilfordii
TWI79G0624 Tripterygium wilfordii
unitig_60.g25586 Utricularia gibba
vmacro06544 Vaccinium macrocarpon
vmacro06545 Vaccinium macrocarpon
vmacro12738 Vaccinium macrocarpon
VMungo0464G0114 Vigna mungo
Zm00001eb182550 Zea mays
Zm00001eb338680 Zea mays

User provided reference genes

Program Settings