Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12530 Brassica napus
A02p23880 Brassica napus
A07p26400 Brassica napus
Aa31LG4G250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2502 Anthoceros agrestis
Actinidia03141 Actinidia chinensis
Actinidia05449 Actinidia chinensis
Actinidia08427 Actinidia chinensis
Actinidia31843 Actinidia chinensis
Ah.05g171480 Amaranthus hybridus
Ah.15g089750 Amaranthus hybridus
Ah.15g089760 Amaranthus hybridus
Ah.15g089770 Amaranthus hybridus
AL2G41600 Arabidopsis lyrata
AL7G32940 Arabidopsis lyrata
Aqoxy1G00557 Aquilegia oxysepala
Aqoxy3G00494 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0GK98G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7I7SCW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LVPM4A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RF2AQ6 Arachis hypogaea
AT1G79940 Arabidopsis thaliana
AT4G21180 Arabidopsis thaliana
ATR0564G109 Amborella trichopoda
Atru.chr8.1225 Acer truncatum
AUR62021103 Chenopodium quinoa
AUR62031437 Chenopodium quinoa
BcaB01g04005 Brassica carinata
BcaC01g02568 Brassica carinata
BcaC02g08734 Brassica carinata
BcaC03g16012 Brassica carinata
BcaC03g16013 Brassica carinata
BcaC03g16014 Brassica carinata
BcaC05g25934 Brassica carinata
BcaC08g45276 Brassica carinata
BcaC08g47562 Brassica carinata
BcaC08g47563 Brassica carinata
BcaC08g47592 Brassica carinata
BcaC08g47593 Brassica carinata
BcaC09g51249 Brassica carinata
BcaNung03836 Brassica carinata
BcaNung07153 Brassica carinata
BolC1t01461H Brassica oleracea
BolC2t09785H Brassica oleracea
BolC2t09786H Brassica oleracea
BolC2t12483H Brassica oleracea
BolC6t38049H Brassica oleracea
BolC6t40444H Brassica oleracea
BolC9t55321H Brassica oleracea
BraA01t01198Z Brassica rapa
BraA02t07381Z Brassica rapa
BraA02t07382Z Brassica rapa
BraA07t30284Z Brassica rapa
C01p15120 Brassica napus
C02p37670 Brassica napus
C02p37680 Brassica napus
C02p64210 Brassica napus
C04p51220 Brassica napus
C06p28790 Brassica napus
C06p54330 Brassica napus
C09p24010 Brassica napus
CAN.G126.39 Capsicum annuum
CAN.G2487.1 Capsicum annuum
CAN.G824.20 Capsicum annuum
CANSAT11G1379 Cannabis sativa
CARHR074540 Cardamine hirsuta
CARHR227760 Cardamine hirsuta
Carub.0002s2756 Capsella rubella
Carub.0007s2025 Capsella rubella
Ca_02287_v3 Cicer arietinum L.
CBR_g22342 Chara braunii
Cc02_g02260 Coffea canephora
Cc06_g05410 Coffea canephora
CDE02G1624 Ceratophyllum demersum
CDE02G1775 Ceratophyllum demersum
CDE04G1460 Ceratophyllum demersum
Cfa019431 Carpinus fangiana
Cfa019929 Carpinus fangiana
Cfa022687 Carpinus fangiana
Ciclev10030891m.g Citrus clementina
CiPaw.03G199900 Carya illinoinensis
CiPaw.04G140400 Carya illinoinensis
ClCG05G008490 Citrullus lanatus
COL.COLO4_29794 Corchorus olitorius
COL.COLO4_30293 Corchorus olitorius
Cpa.g.sc107.126 Carica papaya
Cre16.g657850 Chlamydomonas reinhardtii
CsaV3_3G017580 Cucumis sativus L.
CSS0002001 Camellia sinensis var. sinensis
CSS0012044 Camellia sinensis var. sinensis
CSS0035474 Camellia sinensis var. sinensis
DCAR_008897 Daucus carota
DCAR_020274 Daucus carota
Dinv09614 Davidia involucrata
Dinv09615 Davidia involucrata
Dinv21238 Davidia involucrata
Dinv31653 Davidia involucrata
Dinv31654 Davidia involucrata
Dinv35266 Davidia involucrata
Duzib084G0224 Durio zibethinus
Duzib093G1508 Durio zibethinus
Duzib106G0653 Durio zibethinus
Duzib205G1208 Durio zibethinus
ECA232G0210 Erigeron canadensis
ECA238G2360 Erigeron canadensis
EL10Ac3g05404 Beta vulgaris
Eucgr.A00001 Eucalyptus grandis
FAN01G2731 Fragaria x ananassa
FAN03G0384 Fragaria x ananassa
FAN03G1579 Fragaria x ananassa
FAN06G3309 Fragaria x ananassa
FAN06G4953 Fragaria x ananassa
FAN10G1974 Fragaria x ananassa
FAN10G3414 Fragaria x ananassa
FvH4_7g30440 Fragaria vesca
Glyma.09G075400 Glycine max
Glyma.15G183400 Glycine max
Gohir.A04G065342 Gossypium hirsutum
Gohir.A12G253400 Gossypium hirsutum
Gohir.D04G102900 Gossypium hirsutum
Gohir.D12G255700 Gossypium hirsutum
Gorai.008G273800 Gossypium raimondii
Gorai.009G406200 Gossypium raimondii
GSVIVG01028825001 Vitis vinifera
HanXRQChr07g0202321 Helianthus annuus
HanXRQChr14g0433471 Helianthus annuus
Haze_05396 Corylus avellana
Haze_26075 Corylus avellana
Hma1.2p1_0084F.1_g043400 Hydrangea macrophylla
Hma1.2p1_1713F.1_g298870 Hydrangea macrophylla
HPP92_013501 Vanilla planifolia
HPP92_021751 Vanilla planifolia
HPP92_026053 Vanilla planifolia
HPP92_026054 Vanilla planifolia
Hund04797 Selenicereus undatus
Hund11709 Selenicereus undatus
Lalb_Chr01g0018271 Lupinus albus
Lalb_Chr08g0232801 Lupinus albus
Lalb_Chr11g0073951 Lupinus albus
Lalb_Chr23g0276131 Lupinus albus
Lj1A1006G38 Lonicera japonica
Lj2A132T53 Lonicera japonica
Lj6g0018011 Lotus japonicus
Lsat_1_v5_gn_2_22661 Lactuca sativa
Lsat_1_v5_gn_9_56821 Lactuca sativa
Manes.06G153311 Manihot esculenta
Manes.14G021200 Manihot esculenta
Mapoly0090s0076 Marchantia polymorpha
MBI17_g44319_MAGBIO Magnolia biondii
MBI17_g46502_MAGBIO Magnolia biondii
MBI17_g47089_MAGBIO Magnolia biondii
MCO01G058 Micromonas commoda
MD01G1210000 Malus domestica
MD07G1280100 Malus domestica
Medtr2g044580 Medicago truncatula
Migut.F00279 Erythranthe guttata
Migut.J00974 Erythranthe guttata
MSTRG.5818 Avicennia marina
MSTRG.8700 Avicennia marina
Nitab4.5_0000472g0060 Nicotiana tabacum
Nitab4.5_0001331g0010 Nicotiana tabacum
Nitab4.5_0003541g0020 Nicotiana tabacum
Nitab4.5_0004686g0030 Nicotiana tabacum
Nitab4.5_0008581g0010 Nicotiana tabacum
Nitab4.5_0009950g0010 Nicotiana tabacum
Nitab4.5_0011344g0010 Nicotiana tabacum
Nn1g01680 Nelumbo nucifera
Oeu027867.1 Olea europaea
Oeu034359.1 Olea europaea
Oeu040525.2 Olea europaea
Os04g0307200 Oryza sativa ssp. japonica
Peaxi162Scf00444g00247 Petunia axillaris
Peaxi162Scf00820g00510 Petunia axillaris
PGR042G1381 Punica granatum
PGSC0003DMG400002680 Solanum tuberosum
PGSC0003DMG402009494 Solanum tuberosum
Phvul.009G223000 Phaseolus vulgaris
Potri.004G072200 Populus trichocarpa
Potri.017G148800 Populus trichocarpa
Pp3c20_22800 Physcomitrium patens
PRCOL_00006188 Prasinoderma coloniale
Prupe.2G302300 Prunus persica
Psat1g137760 Pisum sativum
Psat6g122800 Pisum sativum
PSO266G0049 Papaver somniferum
PSO478G2229 Papaver somniferum
QL07p039962 Quercus lobata
QL11p003257 Quercus lobata
RcHm_v2.0_Chr1g0378581 Rosa chinensis
RcHm_v2.0_Chr1g0378591 Rosa chinensis
Rhsim03G0078900 Rhododendron simsii
Rhsim09G0201000 Rhododendron simsii
Sabra04G0047600 Salix brachista
Sabra17G0124100 Salix brachista
SalBow3G4009 Salvia bowleyana
SalBow4G0209 Salvia bowleyana
Sc13g0009270 Simmondsia chinensis
Sed0001248 Sechium edule
Sed0004875 Sechium edule
SEGI_09481 Sequoiadendron giganteum
SEGI_11057 Sequoiadendron giganteum
SEGI_20479 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06770 Striga asiatica
SGA_v2.0_scaffold2945G54246 Striga asiatica
SGA_v2.0_scaffold60G21120 Striga asiatica
SHI09092 Sapria himalayana
SHI09095 Sapria himalayana
SMO364G0140 Selaginella moellendorffii
Solyc03g007610.4 Solanum lycopersicum
Solyc09g009180.3 Solanum lycopersicum
Sopen03g003560 Solanum pennellii
Sopen09g003910 Solanum pennellii
Sp5g35840 Schrenkiella parvula
Sp7g19260 Schrenkiella parvula
TAR627G0210 Trochodendron aralioides
TAR636G2825 Trochodendron aralioides
THA.LOC104811944 Tarenaya hassleriana
Thecc.03G185900 Theobroma cacao
Thecc.05G083600 Theobroma cacao
Thecc.05G083700 Theobroma cacao
Thecc.05G084000 Theobroma cacao
Thhalv10018223m.g Eutrema salsugineum
Thhalv10024622m.g Eutrema salsugineum
TPR.G20789 Trifolium pratense
TWI14G0129 Tripterygium wilfordii
TWI39G0419 Tripterygium wilfordii
unitig_37.g11973 Utricularia gibba
unitig_744.g24693 Utricularia gibba
vmacro07383 Vaccinium macrocarpon
vmacro14679 Vaccinium macrocarpon
VMungo1309G1262 Vigna mungo
Zm00001eb086520 Zea mays
Zm00001eb420470 Zea mays

User provided reference genes

Program Settings