Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p39930 Brassica napus
Aa31LG5G18880 Aethionema arabicum
Aa31LG7G11100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1972 Anthoceros agrestis
Actinidia11584 Actinidia chinensis
Actinidia29100 Actinidia chinensis
Actinidia36761 Actinidia chinensis
Ah.08g218480 Amaranthus hybridus
Ah.12g055380 Amaranthus hybridus
AL3G19920 Arabidopsis lyrata
AL7G28440 Arabidopsis lyrata
Aqoxy2G00881 Aquilegia oxysepala
Aqoxy5G03698 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0G1QRI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9Y89B6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A2UBGC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AGZ1EA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DF1MTK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z0DP5C Arachis hypogaea
AT3G08920 Arabidopsis thaliana
AT4G24750 Arabidopsis thaliana
ATR0199G004 Amborella trichopoda
ATR0681G382 Amborella trichopoda
Atru.chr8.2245 Acer truncatum
Atru.chr8.2246 Acer truncatum
Atru.chr9.2618 Acer truncatum
AUR62001223 Chenopodium quinoa
AUR62007341 Chenopodium quinoa
AUR62018658 Chenopodium quinoa
AUR62022097 Chenopodium quinoa
BcaC05g29625 Brassica carinata
BcaC09g50835 Brassica carinata
BolC5t34550H Brassica oleracea
BraSC256t45931Z Brassica rapa
C05p58970 Brassica napus
CAN.G1004.2 Capsicum annuum
CAN.G59.20 Capsicum annuum
CANSAT35G0815 Cannabis sativa
CANSAT80G1905 Cannabis sativa
CARHR083250 Cardamine hirsuta
CARHR232120 Cardamine hirsuta
Carub.0003s0803 Capsella rubella
Carub.0007s1631 Capsella rubella
CBR_g3156 Chara braunii
CBR_g34898 Chara braunii
Cc04_g11180 Coffea canephora
Cc06_g01310 Coffea canephora
CDE04G0714 Ceratophyllum demersum
CDE07G1950 Ceratophyllum demersum
CDE08G0657 Ceratophyllum demersum
CDE08G1276 Ceratophyllum demersum
Cfa017203 Carpinus fangiana
Cfa019259 Carpinus fangiana
Ciclev10012720m.g Citrus clementina
Ciclev10021427m.g Citrus clementina
CiPaw.09G209400 Carya illinoinensis
CiPaw.11G016200 Carya illinoinensis
CiPaw.11G016500 Carya illinoinensis
ClCG06G017470 Citrullus lanatus
COL.COLO4_14532 Corchorus olitorius
COL.COLO4_37484 Corchorus olitorius
COL.COLO4_37865 Corchorus olitorius
Cpa.g.sc159.6 Carica papaya
Cpa.g.sc4.46 Carica papaya
Cre13.g602650 Chlamydomonas reinhardtii
CsaV3_1G000990 Cucumis sativus L.
CsaV3_3G033780 Cucumis sativus L.
CSS0001501 Camellia sinensis var. sinensis
CSS0023443 Camellia sinensis var. sinensis
CSS0035001 Camellia sinensis var. sinensis
DCAR_011893 Daucus carota
DCAR_024020 Daucus carota
DCAR_026193 Daucus carota
Dinv11133 Davidia involucrata
Dinv11135 Davidia involucrata
Dinv23112 Davidia involucrata
Dinv38506 Davidia involucrata
Duzib084G0342 Durio zibethinus
Duzib093G1190 Durio zibethinus
ECA247G2183 Erigeron canadensis
ECA248G0294 Erigeron canadensis
ECA248G0941 Erigeron canadensis
ECA248G2983 Erigeron canadensis
EL10Ac5g12031 Beta vulgaris
EL10Ac7g18022 Beta vulgaris
Eucgr.B00189 Eucalyptus grandis
Eucgr.B00193 Eucalyptus grandis
Eucgr.K02980 Eucalyptus grandis
FAN08G0527 Fragaria x ananassa
FvH4_5g06601 Fragaria vesca
Glyma.01G121700 Glycine max
Glyma.03G057800 Glycine max
Glyma.04G189800 Glycine max
Glyma.06G175800 Glycine max
Gohir.A09G165400 Gossypium hirsutum
Gohir.A12G185900 Gossypium hirsutum
Gohir.D09G161000 Gossypium hirsutum
Gohir.D12G188700 Gossypium hirsutum
Gorai.006G182700 Gossypium raimondii
Gorai.008G202600 Gossypium raimondii
GSVIVG01007604001 Vitis vinifera
GSVIVG01011156001 Vitis vinifera
HanXRQChr01g0006141 Helianthus annuus
HanXRQChr02g0035391 Helianthus annuus
Haze_07617 Corylus avellana
Haze_21005 Corylus avellana
Hma1.2p1_0362F.1_g136260 Hydrangea macrophylla
Hma1.2p1_0362F.1_g136270 Hydrangea macrophylla
Hma1.2p1_1092F.1_g255870 Hydrangea macrophylla
Hma1.2p1_1092F.1_g255880 Hydrangea macrophylla
HPP92_013880 Vanilla planifolia
HPP92_013886 Vanilla planifolia
Hund05604 Selenicereus undatus
Hund11198 Selenicereus undatus
Hund11202 Selenicereus undatus
Lalb_Chr07g0193601 Lupinus albus
Lalb_Chr11g0069861 Lupinus albus
Lj1g0012275 Lotus japonicus
Lj1g0016898 Lotus japonicus
Lj3A953T52 Lonicera japonica
Lj3g0019800 Lotus japonicus
Lj5A132G82 Lonicera japonica
Lsat_1_v5_gn_1_28561 Lactuca sativa
Lsat_1_v5_gn_5_150440 Lactuca sativa
Manes.06G111900 Manihot esculenta
Manes.08G092300 Manihot esculenta
Mapoly0002s0231 Marchantia polymorpha
Mapoly0042s0113 Marchantia polymorpha
MBI03_g37291_MAGBIO Magnolia biondii
MBI10_g44128_MAGBIO Magnolia biondii
MD06G1224500 Malus domestica
MD14G1168400 Malus domestica
MD14G1168500 Malus domestica
Medtr3g075540 Medicago truncatula
Medtr4g015860 Medicago truncatula
MELO3C009167.2 Cucumis melo
MELO3C026250.2 Cucumis melo
Migut.J00165 Erythranthe guttata
Migut.O00181 Erythranthe guttata
MSTRG.5573 Avicennia marina
Nitab4.5_0000025g0240 Nicotiana tabacum
Nitab4.5_0000119g0130 Nicotiana tabacum
Nitab4.5_0001377g0020 Nicotiana tabacum
Nitab4.5_0001455g0030 Nicotiana tabacum
Nn3g16664 Nelumbo nucifera
Oeu034563.1 Olea europaea
Oeu063270.2 Olea europaea
Os02g0596000 Oryza sativa ssp. japonica
Os03g0289400 Oryza sativa ssp. japonica
Peaxi162Scf00014g00412 Petunia axillaris
Peaxi162Scf00801g00733 Petunia axillaris
PGR004G1270 Punica granatum
PGR083G0505 Punica granatum
PGSC0003DMG400019121 Solanum tuberosum
Phvul.009G171900 Phaseolus vulgaris
Phvul.010G000900 Phaseolus vulgaris
Potri.006G100600 Populus trichocarpa
Potri.015G086100 Populus trichocarpa
Pp3c10_2220 Physcomitrium patens
Pp3c6_20980 Physcomitrium patens
Pp3c7_15530 Physcomitrium patens
PRCOL_00002422 Prasinoderma coloniale
PRCOL_00002596 Prasinoderma coloniale
PRCOL_00005447 Prasinoderma coloniale
Prupe.5G163400 Prunus persica
Psat5g117640 Pisum sativum
Psat7g245080 Pisum sativum
PSO063G7275 Papaver somniferum
PSO210G3123 Papaver somniferum
PSO339G4196 Papaver somniferum
QL03p060389 Quercus lobata
QL07p019780 Quercus lobata
QL10p006228 Quercus lobata
QL10p006239 Quercus lobata
RcHm_v2.0_Chr1g0313851 Rosa chinensis
RcHm_v2.0_Chr2g0119491 Rosa chinensis
RcHm_v2.0_Chr3g0475211 Rosa chinensis
RcHm_v2.0_Chr7g0192141 Rosa chinensis
Rhsim05G0215900 Rhododendron simsii
Rhsim12G0169500 Rhododendron simsii
RhsimUnG0048300 Rhododendron simsii
RhsimUnG0048400 Rhododendron simsii
Sabra06G0077400 Salix brachista
Sabra15G0109000 Salix brachista
SalBow4G1116 Salvia bowleyana
SalBow5G1405 Salvia bowleyana
SalBow5G1577 Salvia bowleyana
SalBow5G2432 Salvia bowleyana
SalBow5G3338 Salvia bowleyana
SalBow5G3538 Salvia bowleyana
Sc04g0001210 Simmondsia chinensis
Sc04g0001230 Simmondsia chinensis
Sc22g0001790 Simmondsia chinensis
Sed0006401 Sechium edule
Sed0027100 Sechium edule
SEGI_01299 Sequoiadendron giganteum
SGA_v2.0_scaffold85G26733 Striga asiatica
SGA_v2.0_scaffold90G27815 Striga asiatica
SMO203G0236 Selaginella moellendorffii
SMO364G0570 Selaginella moellendorffii
Solyc01g058220.3 Solanum lycopersicum
Solyc10g076700.2 Solanum lycopersicum
Solyc12g021330.1 Solanum lycopersicum
Solyc12g021340.3 Solanum lycopersicum
Sopen10g028300 Solanum pennellii
Sopen12g011690 Solanum pennellii
Sp3g07310 Schrenkiella parvula
Sp7g22730 Schrenkiella parvula
TAR622G0090 Trochodendron aralioides
TAR633G1929 Trochodendron aralioides
THA.LOC104809647 Tarenaya hassleriana
THA.LOC104823296 Tarenaya hassleriana
Thecc.03G117300 Theobroma cacao
Thecc.05G015700 Theobroma cacao
Thhalv10021504m.g Eutrema salsugineum
Thhalv10025885m.g Eutrema salsugineum
TPR.G13326 Trifolium pratense
TPR.G35599 Trifolium pratense
TWI39G0012 Tripterygium wilfordii
TWI77G0804 Tripterygium wilfordii
unitig_8.g3070 Utricularia gibba
unitig_8.g3227 Utricularia gibba
vmacro09167 Vaccinium macrocarpon
vmacro16680 Vaccinium macrocarpon
vmacro20275 Vaccinium macrocarpon
vmacro20279 Vaccinium macrocarpon
vmacro21727 Vaccinium macrocarpon
vmacro22887 Vaccinium macrocarpon
vmacro23142 Vaccinium macrocarpon
VMungo0331G1386 Vigna mungo
VMungo1309G1657 Vigna mungo
Zm00001eb013370 Zea mays
Zm00001eb246160 Zea mays

User provided reference genes

Program Settings