Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p17470 Brassica napus
A07p38000 Brassica napus
A09p32220 Brassica napus
A09p58670 Brassica napus
Aa31LG4G8780 Aethionema arabicum
Aa31LG8G17790 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5687 Anthoceros agrestis
Actinidia11064 Actinidia chinensis
Ah.09g225130 Amaranthus hybridus
AL1G48770 Arabidopsis lyrata
AL2G31460 Arabidopsis lyrata
AL3G54130 Arabidopsis lyrata
Aqoxy1G02602 Aquilegia oxysepala
Aqoxy6G00503 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1GIV4V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D6F48U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WUJ08V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z2HVA4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZHJ4N0 Arachis hypogaea
AT1G34245 Arabidopsis thaliana
AT1G71866 Arabidopsis thaliana
AT2G20875 Arabidopsis thaliana
ATR0564G525 Amborella trichopoda
ATR0693G220 Amborella trichopoda
AUR62011162 Chenopodium quinoa
AUR62013323 Chenopodium quinoa
BcaB05g24684 Brassica carinata
BcaB07g32489 Brassica carinata
BcaB07g33145 Brassica carinata
BcaB08g34946 Brassica carinata
BcaC07g41190 Brassica carinata
BcaC08g43793 Brassica carinata
BcaC08g46616 Brassica carinata
BolC2t08962H Brassica oleracea
BolC6t36304H Brassica oleracea
BolC6t39644H Brassica oleracea
BolC8t51759H Brassica oleracea
BraA02t06792Z Brassica rapa
BraA07t31365Z Brassica rapa
BraA09t38768Z Brassica rapa
BraA09t41253Z Brassica rapa
C06p11730 Brassica napus
C06p45920 Brassica napus
C08p41960 Brassica napus
CAN.G248.45 Capsicum annuum
CAN.G486.8 Capsicum annuum
CAN.G617.1 Capsicum annuum
CANSAT25G3160 Cannabis sativa
CANSAT64G0584 Cannabis sativa
CARHR033740 Cardamine hirsuta
CARHR111620 Cardamine hirsuta
CARHR290900 Cardamine hirsuta
Carub.0001s3239 Capsella rubella
Carub.0002s1118 Capsella rubella
Carub.0002s1864 Capsella rubella
Carub.0003s3554 Capsella rubella
Carub.0033s0010 Capsella rubella
Ca_01511_v3 Cicer arietinum L.
Cc05_g06800 Coffea canephora
Cfa014580 Carpinus fangiana
Cfa018222 Carpinus fangiana
Ciclev10003691m.g Citrus clementina
Ciclev10017558m.g Citrus clementina
CiPaw.03G174200 Carya illinoinensis
CiPaw.04G124400 Carya illinoinensis
CiPaw.12G121400 Carya illinoinensis
CiPaw.15G006900 Carya illinoinensis
CiPaw.16G005700 Carya illinoinensis
ClCG00G002400 Citrullus lanatus
ClCG02G001120 Citrullus lanatus
ClCG02G017500 Citrullus lanatus
ClCG08G008650 Citrullus lanatus
COL.COLO4_21238 Corchorus olitorius
COL.COLO4_36800 Corchorus olitorius
Cpa.g.sc700.4 Carica papaya
Cpa.g.sc934.1 Carica papaya
CsaV3_7G004320 Cucumis sativus L.
CSS0009390 Camellia sinensis var. sinensis
CSS0011693 Camellia sinensis var. sinensis
CSS0025919 Camellia sinensis var. sinensis
CSS0039723 Camellia sinensis var. sinensis
DCAR_009739 Daucus carota
DCAR_012849 Daucus carota
Dinv23680 Davidia involucrata
Duzib116G0078 Durio zibethinus
Duzib248G0643 Durio zibethinus
ECA246G2932 Erigeron canadensis
EL10Ac1g01703 Beta vulgaris
EL10Ac8g18698 Beta vulgaris
Eucgr.F03339 Eucalyptus grandis
Eucgr.K00958 Eucalyptus grandis
FAN09G0176 Fragaria x ananassa
FAN24G0163 Fragaria x ananassa
FAN27G0015 Fragaria x ananassa
FvH4_2g12460 Fragaria vesca
FvH4_6g45090 Fragaria vesca
Glyma.06G248500 Glycine max
Glyma.08G168400 Glycine max
Glyma.12G149500 Glycine max
Glyma.12G202700 Glycine max
Glyma.13G299000 Glycine max
Glyma.15G258600 Glycine max
Gohir.A01G016200 Gossypium hirsutum
Gohir.A02G061600 Gossypium hirsutum
Gohir.A05G272100 Gossypium hirsutum
Gohir.D01G016200 Gossypium hirsutum
Gohir.D02G067200 Gossypium hirsutum
Gohir.D05G274300 Gossypium hirsutum
Gorai.002G017900 Gossypium raimondii
Gorai.005G076100 Gossypium raimondii
Gorai.009G287400 Gossypium raimondii
GSVIVG01001590001 Vitis vinifera
GSVIVG01014396001 Vitis vinifera
GSVIVG01030543001 Vitis vinifera
HanXRQChr10g0278541 Helianthus annuus
HanXRQChr11g0320401 Helianthus annuus
HanXRQChr17g0542641 Helianthus annuus
Haze_17880 Corylus avellana
Hma1.2p1_0276F.1_g111330 Hydrangea macrophylla
Hma1.2p1_0875F.1_g231370 Hydrangea macrophylla
HPP92_008822 Vanilla planifolia
HPP92_016807 Vanilla planifolia
HPP92_016817 Vanilla planifolia
Hund01160 Selenicereus undatus
Hund08055 Selenicereus undatus
Lalb_Chr01g0006471 Lupinus albus
Lalb_Chr01g0007131 Lupinus albus
Lalb_Chr01g0015861 Lupinus albus
Lalb_Chr25g0284831 Lupinus albus
Lj3g0008269 Lotus japonicus
Lj3g0008540 Lotus japonicus
Lj3g0019899 Lotus japonicus
Lj3g0021385 Lotus japonicus
Lsat_1_v5_gn_3_41561 Lactuca sativa
Lsat_1_v5_gn_6_101960 Lactuca sativa
Lsat_1_v5_gn_9_43080 Lactuca sativa
Lsat_1_v5_gn_9_97320 Lactuca sativa
Manes.03G113700 Manihot esculenta
Manes.18G097700 Manihot esculenta
MBI05_g36577_MAGBIO Magnolia biondii
MBI18_g16344_MAGBIO Magnolia biondii
MD00G1078200 Malus domestica
MD09G1089600 Malus domestica
MD17G1079000 Malus domestica
Medtr2g067510 Medicago truncatula
Medtr2g090220 Medicago truncatula
MELO3C019934.2 Cucumis melo
MELO3C028633.2 Cucumis melo
Migut.H01059 Erythranthe guttata
Migut.N02915 Erythranthe guttata
MSTRG.22134 Avicennia marina
Nitab4.5_0000553g0050 Nicotiana tabacum
Nitab4.5_0001307g0190 Nicotiana tabacum
Nitab4.5_0003793g0020 Nicotiana tabacum
Nitab4.5_0009608g0020 Nicotiana tabacum
Nn1g03993 Nelumbo nucifera
Nn1g06655 Nelumbo nucifera
Oeu041273.1 Olea europaea
Os04g0457700 Oryza sativa ssp. japonica
Os04g0637300 Oryza sativa ssp. japonica
Peaxi162Scf00132g00516 Petunia axillaris
Peaxi162Scf00756g10018 Petunia axillaris
Peaxi162Scf02133g00016 Petunia axillaris
PGR042G1750 Punica granatum
PGR142G1947 Punica granatum
PGSC0003DMG400007864 Solanum tuberosum
PGSC0003DMG400027541 Solanum tuberosum
Phvul.005G060200 Phaseolus vulgaris
Phvul.005G105600 Phaseolus vulgaris
Phvul.011G174100 Phaseolus vulgaris
Potri.011G123000 Populus trichocarpa
Potri.013G116600 Populus trichocarpa
Potri.013G136100 Populus trichocarpa
Potri.019G102800 Populus trichocarpa
Pp3c6_27020 Physcomitrium patens
Prupe.3G235800 Prunus persica
Prupe.8G050100 Prunus persica
Psat1g013360 Pisum sativum
Psat5g271480 Pisum sativum
PSO541G3005 Papaver somniferum
PSO675G3062 Papaver somniferum
PSO675G4549 Papaver somniferum
QL02p034820 Quercus lobata
QL08p019570 Quercus lobata
QL08p038108 Quercus lobata
RcHm_v2.0_Chr2g0162501 Rosa chinensis
RcHm_v2.0_Chr6g0272891 Rosa chinensis
Rhsim04G0019300 Rhododendron simsii
Rhsim07G0198700 Rhododendron simsii
Sabra11G0108600 Salix brachista
Sabra13G0098700 Salix brachista
SalBow1G2579 Salvia bowleyana
SalBow6G0519 Salvia bowleyana
SalBow7G0681 Salvia bowleyana
Sc21g0002550 Simmondsia chinensis
Sed0008296 Sechium edule
Sed0012314 Sechium edule
Sed0014361 Sechium edule
Sed0027653 Sechium edule
SEGI_05053 Sequoiadendron giganteum
SEGI_13003 Sequoiadendron giganteum
SEGI_31850 Sequoiadendron giganteum
SGA_v2.0_scaffold109G31104 Striga asiatica
SGA_v2.0_scaffold315G48378 Striga asiatica
Solyc04g072490.4 Solanum lycopersicum
Solyc06g064533.1 Solanum lycopersicum
Solyc10g011830.1 Solanum lycopersicum
Solyc12g010720.1 Solanum lycopersicum
Sopen04g028680 Solanum pennellii
Sopen12g005280 Solanum pennellii
Sp1g29480 Schrenkiella parvula
Sp3g34130 Schrenkiella parvula
TAR628G1408 Trochodendron aralioides
THA.LOC104813094 Tarenaya hassleriana
THA.LOC104824712 Tarenaya hassleriana
Thecc.02G176500 Theobroma cacao
Thecc.08G198800 Theobroma cacao
Thhalv10002128m.g Eutrema salsugineum
Thhalv10009525m.g Eutrema salsugineum
Thhalv10019790m.g Eutrema salsugineum
TPR.G33811 Trifolium pratense
TPR.G35540 Trifolium pratense
TWI34G1361 Tripterygium wilfordii
TWI36G1582 Tripterygium wilfordii
TWI38G2361 Tripterygium wilfordii
TWI75G1165 Tripterygium wilfordii
unitig_26.g9944 Utricularia gibba
vmacro09546 Vaccinium macrocarpon
VMungo1080G0490 Vigna mungo
VMungo1127G1074 Vigna mungo
Zm00001eb069150 Zea mays
Zm00001eb423950 Zea mays
Zm00001eb431780 Zea mays

User provided reference genes

Program Settings