Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p32400 Brassica napus
A05p32410 Brassica napus
A06p09520 Brassica napus
Aa31LG8G4270 Aethionema arabicum
Actinidia02349 Actinidia chinensis
Actinidia15968 Actinidia chinensis
Actinidia26894 Actinidia chinensis
Ah.14g087900 Amaranthus hybridus
AL1G23110 Arabidopsis lyrata
AL3G30400 Arabidopsis lyrata
Aqoxy1G03068 Aquilegia oxysepala
Aqoxy2G02562 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C5RAU0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GJ2S1F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IY3TI3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QTWL09 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S2XP9D Arachis hypogaea
AT1G11915 Arabidopsis thaliana
AT3G17350 Arabidopsis thaliana
ATR0585G093 Amborella trichopoda
ATR0796G185 Amborella trichopoda
Atru.chr10.2263 Acer truncatum
Atru.chr10.2264 Acer truncatum
Atru.chr4.3124 Acer truncatum
AUR62002569 Chenopodium quinoa
AUR62012740 Chenopodium quinoa
AUR62021916 Chenopodium quinoa
AUR62029990 Chenopodium quinoa
BcaB02g06442 Brassica carinata
BcaB02g06445 Brassica carinata
BcaB03g13218 Brassica carinata
BcaC05g28795 Brassica carinata
BolC5t29872H Brassica oleracea
BolC5t33644H Brassica oleracea
BolC8t49137H Brassica oleracea
BraA05t22067Z Brassica rapa
BraA05t22068Z Brassica rapa
BraA06t24142Z Brassica rapa
C05p11240 Brassica napus
C05p49040 Brassica napus
C08p15070 Brassica napus
CAN.G1014.25 Capsicum annuum
CAN.G756.8 Capsicum annuum
CANSAT56G1058 Cannabis sativa
CANSAT78G2179 Cannabis sativa
CARHR012250 Cardamine hirsuta
CARHR092670 Cardamine hirsuta
Carub.0001s1160 Capsella rubella
Carub.0003s1706 Capsella rubella
Ca_00681_v3 Cicer arietinum L.
Ca_21068_v3 Cicer arietinum L.
Ca_21387_v3 Cicer arietinum L.
Cc00_g24740 Coffea canephora
Cc03_g00300 Coffea canephora
Cc09_g01420 Coffea canephora
CDE07G1520 Ceratophyllum demersum
Cfa000185 Carpinus fangiana
Cfa015715 Carpinus fangiana
Ciclev10005553m.g Citrus clementina
Ciclev10015825m.g Citrus clementina
CiPaw.02G071200 Carya illinoinensis
CiPaw.09G095500 Carya illinoinensis
ClCG01G021760 Citrullus lanatus
ClCG03G004520 Citrullus lanatus
ClCG05G006810 Citrullus lanatus
COL.COLO4_31808 Corchorus olitorius
Cpa.g.sc146.44 Carica papaya
Cpa.g.sc152.37 Carica papaya
CsaV3_1G010400 Cucumis sativus L.
CsaV3_3G015460 Cucumis sativus L.
CsaV3_6G048820 Cucumis sativus L.
CSS0003009 Camellia sinensis var. sinensis
CSS0018037 Camellia sinensis var. sinensis
DCAR_004234 Daucus carota
DCAR_023384 Daucus carota
Dinv13926 Davidia involucrata
Dinv20085 Davidia involucrata
Dinv29530 Davidia involucrata
Duzib160G0808 Durio zibethinus
Duzib192G0016 Durio zibethinus
Duzib212G0182 Durio zibethinus
ECA234G0282 Erigeron canadensis
EL10Ac3g06273 Beta vulgaris
EL10Ac8g20102 Beta vulgaris
Eucgr.E04010 Eucalyptus grandis
FAN07G1569 Fragaria x ananassa
FAN17G2745 Fragaria x ananassa
FAN21G2270 Fragaria x ananassa
FAN25G0098 Fragaria x ananassa
FvH4_3g01690 Fragaria vesca
FvH4_4g21130 Fragaria vesca
Glyma.07G233600 Glycine max
Glyma.07G262800 Glycine max
Glyma.09G005800 Glycine max
Glyma.15G110400 Glycine max
Glyma.17G011300 Glycine max
Glyma.17G038600 Glycine max
Gohir.A06G150000 Gossypium hirsutum
Gohir.A06G206400 Gossypium hirsutum
Gohir.A09G241900 Gossypium hirsutum
Gohir.A10G011900 Gossypium hirsutum
Gohir.D06G156200 Gossypium hirsutum
Gohir.D06G215200 Gossypium hirsutum
Gohir.D09G242600 Gossypium hirsutum
Gohir.D10G011300 Gossypium hirsutum
Gorai.006G266300 Gossypium raimondii
Gorai.010G182600 Gossypium raimondii
Gorai.010G251200 Gossypium raimondii
Gorai.011G012600 Gossypium raimondii
GSVIVG01012680001 Vitis vinifera
GSVIVG01017668001 Vitis vinifera
HanXRQChr11g0350781 Helianthus annuus
HanXRQChr16g0516971 Helianthus annuus
Haze_00799 Corylus avellana
Haze_06832 Corylus avellana
Haze_06837 Corylus avellana
Hma1.2p1_0298F.1_g117630 Hydrangea macrophylla
Hma1.2p1_1160F.1_g262450 Hydrangea macrophylla
HPP92_023145 Vanilla planifolia
Hund12245 Selenicereus undatus
Hund23446 Selenicereus undatus
Lalb_Chr12g0200711 Lupinus albus
Lalb_Chr15g0087701 Lupinus albus
Lalb_Chr20g0118861 Lupinus albus
Lj1A1233T64 Lonicera japonica
Lj4g0024176 Lotus japonicus
Lj6g0020889 Lotus japonicus
Lj6P699T26 Lonicera japonica
Lsat_1_v5_gn_1_40601 Lactuca sativa
Lsat_1_v5_gn_4_59300 Lactuca sativa
Manes.15G003500 Manihot esculenta
Manes.16G004000 Manihot esculenta
Manes.17G028900 Manihot esculenta
MBI07_g09093_MAGBIO Magnolia biondii
MBI18_g28903_MAGBIO Magnolia biondii
MD00G1202600 Malus domestica
MD05G1349900 Malus domestica
MD10G1324600 Malus domestica
MD10G1324700 Malus domestica
MD16G1139400 Malus domestica
Medtr2g023970 Medicago truncatula
Medtr4g123700 Medicago truncatula
Medtr4g132450 Medicago truncatula
MELO3C002430.2 Cucumis melo
MELO3C007410.2 Cucumis melo
MELO3C031621.2 Cucumis melo
Migut.H01951 Erythranthe guttata
Migut.N00014 Erythranthe guttata
MSTRG.12897 Avicennia marina
Nitab4.5_0000005g0180 Nicotiana tabacum
Nitab4.5_0001409g0060 Nicotiana tabacum
Nitab4.5_0004088g0080 Nicotiana tabacum
Nitab4.5_0005781g0010 Nicotiana tabacum
Nitab4.5_0008210g0020 Nicotiana tabacum
Nn1g03455 Nelumbo nucifera
Nn1g07219 Nelumbo nucifera
Nn3g21871 Nelumbo nucifera
Oeu022694.1 Olea europaea
Oeu061580.1 Olea europaea
Os06g0364500 Oryza sativa ssp. japonica
Peaxi162Scf00102g01048 Petunia axillaris
Peaxi162Scf00178g01014 Petunia axillaris
Peaxi162Scf00294g01312 Petunia axillaris
PGR031G3485 Punica granatum
PGR142G0305 Punica granatum
PGSC0003DMG400016467 Solanum tuberosum
Phvul.003G080900 Phaseolus vulgaris
Phvul.003G119500 Phaseolus vulgaris
Phvul.006G147700 Phaseolus vulgaris
Potri.004G007400 Populus trichocarpa
Potri.008G099800 Populus trichocarpa
Potri.010G152900 Populus trichocarpa
Potri.011G007900 Populus trichocarpa
Prupe.1G108900 Prunus persica
Prupe.4G017500 Prunus persica
Psat0ss1196g0560 Pisum sativum
Psat1g178880 Pisum sativum
Psat4g005680 Pisum sativum
Psat6g002320 Pisum sativum
PSO210G4875 Papaver somniferum
PSO210G6869 Papaver somniferum
PSO761G0183 Papaver somniferum
PSO832G0216 Papaver somniferum
QL06p013758 Quercus lobata
RcHm_v2.0_Chr4g0426711 Rosa chinensis
RcHm_v2.0_Chr5g0002541 Rosa chinensis
Rhsim04G0246700 Rhododendron simsii
Rhsim13G0151800 Rhododendron simsii
Sabra04G0004200 Salix brachista
Sabra08G0075500 Salix brachista
Sabra10G0117600 Salix brachista
Sabra11G0006700 Salix brachista
Sabra11G0009300 Salix brachista
SalBow7G4389 Salvia bowleyana
Sc17g0007510 Simmondsia chinensis
Sc25g0001510 Simmondsia chinensis
Sed0007514 Sechium edule
Sed0010906 Sechium edule
Sed0013175 Sechium edule
SEGI_11155 Sequoiadendron giganteum
SEGI_12346 Sequoiadendron giganteum
SGA_v2.0_scaffold130G34353 Striga asiatica
SGA_v2.0_scaffold227G43205 Striga asiatica
SGA_v2.0_scaffold70G23683 Striga asiatica
SHI00063 Sapria himalayana
Solyc01g088500.3 Solanum lycopersicum
Solyc02g080900.3 Solanum lycopersicum
Sopen01g035360 Solanum pennellii
Sopen02g025590 Solanum pennellii
Sp1g10580 Schrenkiella parvula
Sp3g15520 Schrenkiella parvula
TAR365G0202 Trochodendron aralioides
TAR627G0195 Trochodendron aralioides
THA.LOC104809485 Tarenaya hassleriana
THA.LOC104821807 Tarenaya hassleriana
Thecc.04G310000 Theobroma cacao
Thecc.06G225000 Theobroma cacao
Thhalv10008171m.g Eutrema salsugineum
Thhalv10021189m.g Eutrema salsugineum
TPR.G12622 Trifolium pratense
TPR.G13032 Trifolium pratense
TPR.G37029 Trifolium pratense
TPR.G37104 Trifolium pratense
TWI09G0698 Tripterygium wilfordii
TWI38G0503 Tripterygium wilfordii
TWI63G0535 Tripterygium wilfordii
unitig_26.g9523 Utricularia gibba
vmacro03674 Vaccinium macrocarpon
vmacro07994 Vaccinium macrocarpon
VMungo0540G1806 Vigna mungo
VMungo1215G2080 Vigna mungo
VMungo1215G3037 Vigna mungo
Zm00001eb169960 Zea mays

User provided reference genes

Program Settings