Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12820 Brassica napus
A01p30160 Brassica napus
A03p30260 Brassica napus
A03p66760 Brassica napus
A06p07910 Brassica napus
A09p25790 Brassica napus
Aa31LG2G9330 Aethionema arabicum
Aa31LG9G9430 Aethionema arabicum
Actinidia05572 Actinidia chinensis
Actinidia11808 Actinidia chinensis
Actinidia24059 Actinidia chinensis
Actinidia26996 Actinidia chinensis
Ah.09g236130 Amaranthus hybridus
AL2G14990 Arabidopsis lyrata
AL6G48600 Arabidopsis lyrata
AL7G32540 Arabidopsis lyrata
Aqoxy1G02736 Aquilegia oxysepala
Aqoxy1G03877 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5AX3QQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.72AI1G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CAN000 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E8KCWE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HD6LCK Arachis hypogaea
AT1G61340 Arabidopsis thaliana
AT4G05010 Arabidopsis thaliana
AT4G21510 Arabidopsis thaliana
ATR0693G092 Amborella trichopoda
Atru.chr10.2010 Acer truncatum
AUR62016898 Chenopodium quinoa
BcaB01g01864 Brassica carinata
BcaB01g02566 Brassica carinata
BcaB04g20333 Brassica carinata
BcaC01g06652 Brassica carinata
BcaC02g10579 Brassica carinata
BcaC04g21365 Brassica carinata
BcaC05g25001 Brassica carinata
BcaC06g31841 Brassica carinata
BcaNung02792 Brassica carinata
BcaNung02793 Brassica carinata
BcaNung04468 Brassica carinata
BolC1t01498H Brassica oleracea
BolC1t03793H Brassica oleracea
BolC3t15964H Brassica oleracea
BolC4t24257H Brassica oleracea
BolC5t29694H Brassica oleracea
BolC9t56113H Brassica oleracea
BraA01t01226Z Brassica rapa
BraA01t02804Z Brassica rapa
BraA01t03153Z Brassica rapa
BraA03t12210Z Brassica rapa
BraA06t23991Z Brassica rapa
BraA09t38149Z Brassica rapa
C01p15440 Brassica napus
C01p38310 Brassica napus
C03p36510 Brassica napus
C04p27250 Brassica napus
C05p09520 Brassica napus
C09p32680 Brassica napus
CAN.G132.15 Capsicum annuum
CAN.G289.27 Capsicum annuum
CAN.G424.14 Capsicum annuum
CANSAT56G3193 Cannabis sativa
CARHR011490 Cardamine hirsuta
CARHR051300 Cardamine hirsuta
CARHR228170 Cardamine hirsuta
CARHR252520 Cardamine hirsuta
Carub.0001s1084 Capsella rubella
Carub.0002s0383 Capsella rubella
Carub.0006s3298 Capsella rubella
Carub.0007s1991 Capsella rubella
Ca_18482_v3 Cicer arietinum L.
Cc02_g12440 Coffea canephora
Cfa000353 Carpinus fangiana
Ciclev10016832m.g Citrus clementina
CiPaw.09G158000 Carya illinoinensis
ClCG00G005360 Citrullus lanatus
ClCG01G022560 Citrullus lanatus
COL.COLO4_31585 Corchorus olitorius
Cpa.g.sc2820.1 Carica papaya
CsaV3_6G049750 Cucumis sativus L.
CSS0030314 Camellia sinensis var. sinensis
CSS0042931 Camellia sinensis var. sinensis
DCAR_004138 Daucus carota
DCAR_008070 Daucus carota
DCAR_028132 Daucus carota
Dinv40479 Davidia involucrata
Duzib160G0394 Durio zibethinus
Duzib192G0121 Durio zibethinus
ECA234G2368 Erigeron canadensis
ECA236G1522 Erigeron canadensis
EL10Ac8g20529 Beta vulgaris
Eucgr.D00712 Eucalyptus grandis
FAN11G3871 Fragaria x ananassa
FAN21G3300 Fragaria x ananassa
FAN25G2238 Fragaria x ananassa
FvH4_3g04020 Fragaria vesca
Glyma.07G190100 Glycine max
Glyma.08G058900 Glycine max
Glyma.13G244700 Glycine max
Glyma.13G246200 Glycine max
Glyma.15G069000 Glycine max
Glyma.16G009600 Glycine max
Gohir.A05G165700 Gossypium hirsutum
Gohir.A09G070900 Gossypium hirsutum
Gohir.A10G020900 Gossypium hirsutum
Gohir.D05G168700 Gossypium hirsutum
Gohir.D09G070700 Gossypium hirsutum
Gohir.D10G021700 Gossypium hirsutum
Gorai.006G085400 Gossypium raimondii
Gorai.009G173900 Gossypium raimondii
Gorai.011G022800 Gossypium raimondii
GSVIVG01003188001 Vitis vinifera
HanXRQChr05g0131241 Helianthus annuus
HanXRQChr16g0502961 Helianthus annuus
HanXRQChr16g0517451 Helianthus annuus
Haze_06573 Corylus avellana
Hma1.2p1_1182F.1_g264820 Hydrangea macrophylla
HPP92_012356 Vanilla planifolia
HPP92_014080 Vanilla planifolia
Hund23608 Selenicereus undatus
Lalb_Chr09g0327461 Lupinus albus
Lalb_Chr15g0090111 Lupinus albus
Lalb_Chr18g0057181 Lupinus albus
Lalb_Chr20g0119471 Lupinus albus
Lalb_Chr20g0122281 Lupinus albus
Lj2A279T59 Lonicera japonica
Lj4g0021109 Lotus japonicus
Lj6g0014531 Lotus japonicus
Lsat_1_v5_gn_4_57061 Lactuca sativa
Lsat_1_v5_gn_7_19621 Lactuca sativa
Manes.16G020700 Manihot esculenta
MBI02_g06001_MAGBIO Magnolia biondii
MD05G1112900 Malus domestica
MD05G1299400 Malus domestica
MD05G1325400 Malus domestica
MD10G1303400 Malus domestica
Medtr2g011800 Medicago truncatula
Medtr4g091100 Medicago truncatula
MELO3C007321.2 Cucumis melo
Migut.M01213 Erythranthe guttata
MSTRG.13182 Avicennia marina
MSTRG.15935 Avicennia marina
MSTRG.7290 Avicennia marina
Nitab4.5_0000190g0100 Nicotiana tabacum
Nitab4.5_0002222g0070 Nicotiana tabacum
Nitab4.5_0003465g0090 Nicotiana tabacum
Nitab4.5_0005936g0030 Nicotiana tabacum
Nitab4.5_0009994g0030 Nicotiana tabacum
Nitab4.5_0012269g0020 Nicotiana tabacum
Nn1g03898 Nelumbo nucifera
Nn1g06760 Nelumbo nucifera
Oeu002243.1 Olea europaea
Oeu005926.1 Olea europaea
Oeu014708.1 Olea europaea
Oeu018557.4 Olea europaea
Oeu030053.1 Olea europaea
Oeu043681.1 Olea europaea
Oeu043690.1 Olea europaea
Oeu051329.1 Olea europaea
Oeu059547.2 Olea europaea
Oeu059554.1 Olea europaea
Oeu063388.1 Olea europaea
Os07g0561300 Oryza sativa ssp. japonica
Peaxi162Scf00083g00012 Petunia axillaris
Peaxi162Scf00137g00151 Petunia axillaris
Peaxi162Scf00371g01022 Petunia axillaris
PGR004G0173 Punica granatum
PGR042G1480 Punica granatum
PGR044G0217 Punica granatum
PGSC0003DMG400005038 Solanum tuberosum
PGSC0003DMG400011249 Solanum tuberosum
PGSC0003DMG400022356 Solanum tuberosum
Phvul.002G222100 Phaseolus vulgaris
Phvul.006G192100 Phaseolus vulgaris
Potri.004G034400 Populus trichocarpa
Potri.011G042800 Populus trichocarpa
Prupe.4G036800 Prunus persica
Psat7g108440 Pisum sativum
PSO210G1336 Papaver somniferum
PSO541G5210 Papaver somniferum
PSO675G0167 Papaver somniferum
PSO832G3488 Papaver somniferum
QL04p018313 Quercus lobata
RcHm_v2.0_Chr2g0138281 Rosa chinensis
RcHm_v2.0_Chr5g0006321 Rosa chinensis
Rhsim02G0119700 Rhododendron simsii
Rhsim13G0169900 Rhododendron simsii
Sabra04G0020200 Salix brachista
Sabra11G0029400 Salix brachista
SalBow8G4484 Salvia bowleyana
Sc17g0006630 Simmondsia chinensis
Sc24g0000740 Simmondsia chinensis
Sed0023614 Sechium edule
Sed0028194 Sechium edule
SGA_v2.0_scaffold114G31981 Striga asiatica
SGA_v2.0_scaffold739G53543 Striga asiatica
Solyc02g079150.2 Solanum lycopersicum
Solyc03g006640.3 Solanum lycopersicum
Solyc10g005480.3 Solanum lycopersicum
Sopen02g023950 Solanum pennellii
Sopen03g002650 Solanum pennellii
Sopen10g001460 Solanum pennellii
Sp2g03160 Schrenkiella parvula
Sp6g03930 Schrenkiella parvula
SpUn0889_0010 Schrenkiella parvula
TAR626G0808 Trochodendron aralioides
TAR629G1201 Trochodendron aralioides
TAR629G1966 Trochodendron aralioides
TAR629G2049 Trochodendron aralioides
THA.LOC104806276 Tarenaya hassleriana
THA.LOC104809546 Tarenaya hassleriana
THA.LOC104812725 Tarenaya hassleriana
THA.LOC104819031 Tarenaya hassleriana
Thecc.06G199500 Theobroma cacao
Thhalv10009722m.g Eutrema salsugineum
Thhalv10023716m.g Eutrema salsugineum
Thhalv10026245m.g Eutrema salsugineum
Thhalv10029012m.g Eutrema salsugineum
TPR.G32423 Trifolium pratense
TPR.G8312 Trifolium pratense
TWI38G1696 Tripterygium wilfordii
TWI38G1709 Tripterygium wilfordii
TWI63G1783 Tripterygium wilfordii
unitig_21.g20225 Utricularia gibba
unitig_26.g9371 Utricularia gibba
unitig_744.g24531 Utricularia gibba
unitig_749.g13642 Utricularia gibba
vmacro03809 Vaccinium macrocarpon
vmacro15865 Vaccinium macrocarpon
VMungo0251G2283 Vigna mungo
VMungo0540G1141 Vigna mungo
Zm00001eb106850 Zea mays
Zm00001eb324220 Zea mays

User provided reference genes

Program Settings