Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02810 Brassica napus
A09p10660 Brassica napus
Aa31LG11G14530 Aethionema arabicum
Aa31LG8G12970 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2892 Anthoceros agrestis
Actinidia00400 Actinidia chinensis
Actinidia02727 Actinidia chinensis
Actinidia33981 Actinidia chinensis
Actinidia34387 Actinidia chinensis
Ah.01g018410 Amaranthus hybridus
Ah.10g037330 Amaranthus hybridus
AL3G46740 Arabidopsis lyrata
AL6G25770 Arabidopsis lyrata
Aqoxy3G00870 Aquilegia oxysepala
Aqoxy5G02910 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5AS0RC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4CTAN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FV9KQX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L424UK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RTIF0H Arachis hypogaea
AT2G14910 Arabidopsis thaliana
AT5G14970 Arabidopsis thaliana
ATR0661G530 Amborella trichopoda
ATR1101G040 Amborella trichopoda
Atru.chr5.2436 Acer truncatum
Atru.chr6.2164 Acer truncatum
AUR62010334 Chenopodium quinoa
AUR62014570 Chenopodium quinoa
AUR62016886 Chenopodium quinoa
AUR62039392 Chenopodium quinoa
BcaB07g31798 Brassica carinata
BcaC03g13440 Brassica carinata
BcaC04g23053 Brassica carinata
BolC2t06674H Brassica oleracea
BolC9t54155H Brassica oleracea
BraA02t05254Z Brassica rapa
BraA09t36708Z Brassica rapa
C02p07430 Brassica napus
C09p12640 Brassica napus
CAN.G206.71 Capsicum annuum
CAN.G606.24 Capsicum annuum
CARHR105400 Cardamine hirsuta
CARHR198340 Cardamine hirsuta
Carub.0003s2892 Capsella rubella
Carub.0006s1313 Capsella rubella
Ca_04235_v3 Cicer arietinum L.
Ca_11055_v3 Cicer arietinum L.
Cc00_g01000 Coffea canephora
Cc02_g19480 Coffea canephora
Cc07_g02760 Coffea canephora
CDE02G1111 Ceratophyllum demersum
CDE02G1417 Ceratophyllum demersum
CDE02G3803 Ceratophyllum demersum
CDE04G1510 Ceratophyllum demersum
CDE07G1847 Ceratophyllum demersum
Cfa004610 Carpinus fangiana
Cfa007482 Carpinus fangiana
Ciclev10015676m.g Citrus clementina
Ciclev10028595m.g Citrus clementina
CiPaw.03G033100 Carya illinoinensis
CiPaw.04G022000 Carya illinoinensis
CiPaw.05G013700 Carya illinoinensis
CiPaw.06G168100 Carya illinoinensis
ClCG02G006580 Citrullus lanatus
ClCG10G014640 Citrullus lanatus
COL.COLO4_32564 Corchorus olitorius
COL.COLO4_37021 Corchorus olitorius
Cpa.g.sc14.74 Carica papaya
Cpa.g.sc292.3 Carica papaya
CsaV3_3G041930 Cucumis sativus L.
CsaV3_7G008030 Cucumis sativus L.
CSS0001603 Camellia sinensis var. sinensis
CSS0004644 Camellia sinensis var. sinensis
CSS0016087 Camellia sinensis var. sinensis
CSS0036882 Camellia sinensis var. sinensis
DCAR_029098 Daucus carota
Dinv15777 Davidia involucrata
Dinv33682 Davidia involucrata
Dinv35006 Davidia involucrata
Dinv42208 Davidia involucrata
Duzib132G0003 Durio zibethinus
Duzib147G0337 Durio zibethinus
Duzib187G0659 Durio zibethinus
ECA232G3044 Erigeron canadensis
EL10Ac2g04383 Beta vulgaris
EL10Ac2g04644 Beta vulgaris
EL10Ac9g22250 Beta vulgaris
Eucgr.G01323 Eucalyptus grandis
Eucgr.J02163 Eucalyptus grandis
FAN02G4196 Fragaria x ananassa
FAN05G5471 Fragaria x ananassa
FAN11G2195 Fragaria x ananassa
FAN14G1741 Fragaria x ananassa
FAN14G2449 Fragaria x ananassa
FAN15G3091 Fragaria x ananassa
FAN20G0210 Fragaria x ananassa
FAN24G0227 Fragaria x ananassa
FAN27G2172 Fragaria x ananassa
FvH4_2g04720 Fragaria vesca
FvH4_6g49830 Fragaria vesca
Glyma.10G260200 Glycine max
Glyma.13G068000 Glycine max
Glyma.19G016000 Glycine max
Glyma.20G130900 Glycine max
Gohir.1Z049519 Gossypium hirsutum
Gohir.A01G008300 Gossypium hirsutum
Gohir.A02G121701 Gossypium hirsutum
Gohir.A03G074750 Gossypium hirsutum
Gohir.A03G185200 Gossypium hirsutum
Gohir.A04G061385 Gossypium hirsutum
Gohir.A05G362100 Gossypium hirsutum
Gohir.A12G057800 Gossypium hirsutum
Gohir.A13G044600 Gossypium hirsutum
Gohir.D02G206700 Gossypium hirsutum
Gohir.D04G052300 Gossypium hirsutum
Gohir.D12G057600 Gossypium hirsutum
Gohir.D13G043900 Gossypium hirsutum
Gorai.002G009700 Gossypium raimondii
Gorai.005G234100 Gossypium raimondii
Gorai.008G060700 Gossypium raimondii
Gorai.012G058500 Gossypium raimondii
Gorai.013G048700 Gossypium raimondii
GSVIVG01032582001 Vitis vinifera
GSVIVG01037889001 Vitis vinifera
HanXRQChr09g0265751 Helianthus annuus
HanXRQChr10g0288691 Helianthus annuus
HanXRQChr13g0411661 Helianthus annuus
HanXRQChr15g0474301 Helianthus annuus
HanXRQChr17g0547221 Helianthus annuus
Haze_10213 Corylus avellana
Haze_14615 Corylus avellana
Hma1.2p1_1518F.1_g288510 Hydrangea macrophylla
HPP92_015902 Vanilla planifolia
Hund06303 Selenicereus undatus
Hund13751 Selenicereus undatus
Lalb_Chr02g0159861 Lupinus albus
Lalb_Chr06g0176541 Lupinus albus
Lalb_Chr21g0308231 Lupinus albus
Lj2g0006245 Lotus japonicus
Lj5A216T102 Lonicera japonica
Lj5g0001512 Lotus japonicus
Lju41C29T0 Lonicera japonica
Lsat_1_v5_gn_0_31360 Lactuca sativa
Lsat_1_v5_gn_5_116880 Lactuca sativa
Manes.10G076211 Manihot esculenta
Manes.17G119500 Manihot esculenta
Mapoly0040s0014 Marchantia polymorpha
Mapoly0216s0009 Marchantia polymorpha
MBI15_g18505_MAGBIO Magnolia biondii
MD05G1093000 Malus domestica
MD09G1041100 Malus domestica
MD17G1042400 Malus domestica
Medtr4g071610 Medicago truncatula
Medtr6g008890 Medicago truncatula
MELO3C009911.2 Cucumis melo
MELO3C018502.2 Cucumis melo
Migut.B00406 Erythranthe guttata
Migut.H00177 Erythranthe guttata
MSTRG.23973 Avicennia marina
MSTRG.3202 Avicennia marina
Nitab4.5_0001480g0070 Nicotiana tabacum
Nitab4.5_0004905g0050 Nicotiana tabacum
Nitab4.5_0010004g0010 Nicotiana tabacum
Nitab4.5_0010275g0020 Nicotiana tabacum
Nn3g17044 Nelumbo nucifera
Nn5g30465 Nelumbo nucifera
Oeu011153.1 Olea europaea
Oeu018660.1 Olea europaea
Oeu018661.2 Olea europaea
Os03g0607500 Oryza sativa ssp. japonica
Os12g0581700 Oryza sativa ssp. japonica
Peaxi162Scf00016g02533 Petunia axillaris
Peaxi162Scf00129g00735 Petunia axillaris
PGR042G2586 Punica granatum
PGR142G4076 Punica granatum
PGSC0003DMG400001298 Solanum tuberosum
PGSC0003DMG400025855 Solanum tuberosum
Phvul.004G022600 Phaseolus vulgaris
Phvul.007G042000 Phaseolus vulgaris
Potri.001G298200 Populus trichocarpa
Potri.009G092800 Populus trichocarpa
Prupe.3G276600 Prunus persica
Prupe.8G138000 Prunus persica
Psat1g078360 Pisum sativum
Psat6g216320 Pisum sativum
PSO161G0088 Papaver somniferum
PSO478G1677 Papaver somniferum
QL02p078989 Quercus lobata
QL11p032555 Quercus lobata
RcHm_v2.0_Chr0c44g0503551 Rosa chinensis
RcHm_v2.0_Chr2g0169981 Rosa chinensis
RcHm_v2.0_Chr4g0386121 Rosa chinensis
RcHm_v2.0_Chr4g0386261 Rosa chinensis
RcHm_v2.0_Chr4g0386271 Rosa chinensis
RcHm_v2.0_Chr6g0254391 Rosa chinensis
Rhsim08G0062800 Rhododendron simsii
Rhsim11G0155900 Rhododendron simsii
RhsimUnG0127100 Rhododendron simsii
Sabra09G0071400 Salix brachista
Sabra16G0187000 Salix brachista
SalBow1G2984 Salvia bowleyana
SalBow6G3797 Salvia bowleyana
SalBow6G5330 Salvia bowleyana
Sc08g0001290 Simmondsia chinensis
Sed0000557 Sechium edule
Sed0020844 Sechium edule
SGA_v2.0_scaffold205G41732 Striga asiatica
SGA_v2.0_scaffold32G13027 Striga asiatica
SMO119G0192 Selaginella moellendorffii
Solyc01g107380.3 Solanum lycopersicum
Solyc02g087340.3 Solanum lycopersicum
Sopen01g049620 Solanum pennellii
Sopen02g032090 Solanum pennellii
Sp3g28360 Schrenkiella parvula
Sp6g29070 Schrenkiella parvula
TAR374G0200 Trochodendron aralioides
TAR376G0989 Trochodendron aralioides
TAR622G1071 Trochodendron aralioides
THA.LOC104819546 Tarenaya hassleriana
THA.LOC104822376 Tarenaya hassleriana
Thecc.02G111900 Theobroma cacao
Thecc.04G066000 Theobroma cacao
Thhalv10013974m.g Eutrema salsugineum
Thhalv10022715m.g Eutrema salsugineum
TPR.G18996 Trifolium pratense
TPR.G27138 Trifolium pratense
TWI31G0207 Tripterygium wilfordii
unitig_61.g26024 Utricularia gibba
unitig_899.g15500 Utricularia gibba
vmacro01987 Vaccinium macrocarpon
vmacro18222 Vaccinium macrocarpon
VMungo0464G0006 Vigna mungo
VMungo0720G1742 Vigna mungo
Zm00001eb051780 Zea mays
Zm00001eb219230 Zea mays

User provided reference genes

Program Settings