Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p28150 Brassica napus
Aa31LG4G7030 Aethionema arabicum
Aa31LG7G5510 Aethionema arabicum
Actinidia01382 Actinidia chinensis
Actinidia03429 Actinidia chinensis
Actinidia06611 Actinidia chinensis
Actinidia12224 Actinidia chinensis
Actinidia15186 Actinidia chinensis
Actinidia20071 Actinidia chinensis
Actinidia29497 Actinidia chinensis
AL1G34490 Arabidopsis lyrata
AL2G37140 Arabidopsis lyrata
AL402U10010 Arabidopsis lyrata
Aqoxy1G01928 Aquilegia oxysepala
Aqoxy5G02305 Aquilegia oxysepala
Aqoxy6G00279 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4FGN3C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I47HGM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TSX9B2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y173KB Arachis hypogaea
AT1G21390 Arabidopsis thaliana
AT1G76980 Arabidopsis thaliana
ATR0709G012 Amborella trichopoda
Atru.chr13.1637 Acer truncatum
Atru.chr4.939 Acer truncatum
AUR62007679 Chenopodium quinoa
AUR62013459 Chenopodium quinoa
BcaB02g07090 Brassica carinata
BcaB07g32128 Brassica carinata
BcaC05g26046 Brassica carinata
BcaC05g26048 Brassica carinata
BcaC08g47201 Brassica carinata
BolC5t30721H Brassica oleracea
BolC6t38286H Brassica oleracea
BolC6t40142H Brassica oleracea
BraA06t24841Z Brassica rapa
BraA07t31783Z Brassica rapa
CARHR021780 Cardamine hirsuta
CARHR070490 Cardamine hirsuta
Carub.0001s2080 Capsella rubella
Carub.0002s2388 Capsella rubella
Ca_16630_v3 Cicer arietinum L.
Cc10_g13350 Coffea canephora
CDE06G2796 Ceratophyllum demersum
CDE08G0104 Ceratophyllum demersum
Cfa002912 Carpinus fangiana
Cfa018400 Carpinus fangiana
Ciclev10003587m.g Citrus clementina
CiPaw.03G119900 Carya illinoinensis
CiPaw.04G081400 Carya illinoinensis
CiPaw.15G024600 Carya illinoinensis
CiPaw.16G019600 Carya illinoinensis
ClCG08G003270 Citrullus lanatus
ClCG08G006250 Citrullus lanatus
COL.COLO4_35772 Corchorus olitorius
COL.COLO4_38160 Corchorus olitorius
Cpa.g.sc26.66 Carica papaya
Cpa.g.sc42.173 Carica papaya
CsaV3_6G031200 Cucumis sativus L.
CsaV3_6G035580 Cucumis sativus L.
CSS0044741 Camellia sinensis var. sinensis
CSS0044801 Camellia sinensis var. sinensis
DCAR_001203 Daucus carota
DCAR_010240 Daucus carota
DCAR_014329 Daucus carota
DCAR_031493 Daucus carota
Dinv19537 Davidia involucrata
Dinv24393 Davidia involucrata
Dinv25773 Davidia involucrata
Dinv41151 Davidia involucrata
Duzib041G0628 Durio zibethinus
Duzib093G1863 Durio zibethinus
Duzib187G0480 Durio zibethinus
ECA232G2707 Erigeron canadensis
ECA234G1033 Erigeron canadensis
EL10Ac1g01404 Beta vulgaris
Eucgr.F02770 Eucalyptus grandis
Eucgr.J01339 Eucalyptus grandis
Eucgr.J01342 Eucalyptus grandis
FAN15G2216 Fragaria x ananassa
FAN19G0913 Fragaria x ananassa
FAN20G1459 Fragaria x ananassa
FAN23G0840 Fragaria x ananassa
FAN24G3523 Fragaria x ananassa
FAN26G0773 Fragaria x ananassa
FAN27G1654 Fragaria x ananassa
FAN28G2835 Fragaria x ananassa
FvH4_1g24530 Fragaria vesca
FvH4_2g15290 Fragaria vesca
Glyma.04G243500 Glycine max
Glyma.06G119800 Glycine max
Glyma.06G154700 Glycine max
Glyma.13G036100 Glycine max
Glyma.14G158800 Glycine max
Gohir.A02G069300 Gossypium hirsutum
Gohir.A02G112000 Gossypium hirsutum
Gohir.A05G240200 Gossypium hirsutum
Gohir.A05G383200 Gossypium hirsutum
Gohir.D02G076000 Gossypium hirsutum
Gohir.D03G062500 Gossypium hirsutum
Gohir.D04G032100 Gossypium hirsutum
Gohir.D05G241400 Gossypium hirsutum
Gorai.005G085300 Gossypium raimondii
Gorai.009G250800 Gossypium raimondii
Gorai.012G036500 Gossypium raimondii
Gorai.013G109100 Gossypium raimondii
GSVIVG01022345001 Vitis vinifera
HanXRQChr10g0309091 Helianthus annuus
HanXRQChr11g0322691 Helianthus annuus
HanXRQChr11g0322701 Helianthus annuus
HanXRQChr13g0387221 Helianthus annuus
Haze_17666 Corylus avellana
Haze_25271 Corylus avellana
Haze_25272 Corylus avellana
Haze_25273 Corylus avellana
Hma1.2p1_0539F.1_g174540 Hydrangea macrophylla
Hma1.2p1_0642F.1_g194330 Hydrangea macrophylla
Hma1.2p1_1125F.1_g259580 Hydrangea macrophylla
Hma1.2p1_2692F.1_g327010 Hydrangea macrophylla
Hund17367 Selenicereus undatus
Hund26764 Selenicereus undatus
Lalb_Chr08g0238241 Lupinus albus
Lalb_Chr08g0240931 Lupinus albus
Lalb_Chr10g0101441 Lupinus albus
Lj1g0005014 Lotus japonicus
Lj1g0005492 Lotus japonicus
Lj1g0027406 Lotus japonicus
Lj7P356T43 Lonicera japonica
Lsat_1_v5_gn_0_33040 Lactuca sativa
Lsat_1_v5_gn_1_9061 Lactuca sativa
Manes.02G172300 Manihot esculenta
Manes.12G157200 Manihot esculenta
Manes.18G084700 Manihot esculenta
MBI03_g20844_MAGBIO Magnolia biondii
MBI06_g27454_MAGBIO Magnolia biondii
MD05G1009200 Malus domestica
MD10G1007900 Malus domestica
Medtr1g029550 Medicago truncatula
Medtr3g088815 Medicago truncatula
Medtr3g096450 Medicago truncatula
MELO3C008433.2 Cucumis melo
MELO3C010580.2 Cucumis melo
Migut.H00687 Erythranthe guttata
Migut.N03253 Erythranthe guttata
MSTRG.1394 Avicennia marina
MSTRG.16218 Avicennia marina
MSTRG.24179 Avicennia marina
MSTRG.25346 Avicennia marina
Nitab4.5_0000496g0210 Nicotiana tabacum
Nitab4.5_0002270g0020 Nicotiana tabacum
Nitab4.5_0005621g0190 Nicotiana tabacum
Nitab4.5_0005642g0020 Nicotiana tabacum
Nitab4.5_0006582g0050 Nicotiana tabacum
Nitab4.5_0008281g0010 Nicotiana tabacum
Nn1g06302 Nelumbo nucifera
Nn5g28499 Nelumbo nucifera
Oeu001551.1 Olea europaea
Oeu004513.1 Olea europaea
Oeu045975.1 Olea europaea
Oeu047153.1 Olea europaea
Oeu058296.1 Olea europaea
Os11g0199801 Oryza sativa ssp. japonica
Peaxi162Scf00119g00051 Petunia axillaris
Peaxi162Scf00353g00026 Petunia axillaris
Peaxi162Scf00505g00053 Petunia axillaris
PGR042G1875 Punica granatum
PGR044G0841 Punica granatum
PGR102G0277 Punica granatum
PGSC0003DMG400012217 Solanum tuberosum
PGSC0003DMG400013037 Solanum tuberosum
PGSC0003DMG400023449 Solanum tuberosum
Phvul.001G065100 Phaseolus vulgaris
Phvul.009G132400 Phaseolus vulgaris
Phvul.009G155800 Phaseolus vulgaris
Potri.002G075400 Populus trichocarpa
Potri.005G064700 Populus trichocarpa
Potri.005G185200 Populus trichocarpa
Potri.007G104500 Populus trichocarpa
Prupe.4G272900 Prunus persica
Prupe.8G011500 Prunus persica
Psat5g083880 Pisum sativum
Psat6g040160 Pisum sativum
PSO170G2097 Papaver somniferum
PSO528G0269 Papaver somniferum
QL09p029695 Quercus lobata
QL10p043057 Quercus lobata
RcHm_v2.0_Chr2g0121941 Rosa chinensis
RcHm_v2.0_Chr6g0278041 Rosa chinensis
Rhsim08G0001600 Rhododendron simsii
Rhsim11G0074400 Rhododendron simsii
Sabra02G0058900 Salix brachista
Sabra05G0053700 Salix brachista
Sabra05G0141500 Salix brachista
Sabra07G0085500 Salix brachista
SalBow6G1573 Salvia bowleyana
SalBow7G1710 Salvia bowleyana
Sc26g0002820 Simmondsia chinensis
Sed0005775 Sechium edule
Sed0025902 Sechium edule
Sed0027661 Sechium edule
Sed0028073 Sechium edule
SGA_v2.0_scaffold20G09019 Striga asiatica
SGA_v2.0_scaffold24G10395 Striga asiatica
SGA_v2.0_scaffold25G11145 Striga asiatica
SGA_v2.0_scaffold28G11961 Striga asiatica
SGA_v2.0_scaffold48G17917 Striga asiatica
SGA_v2.0_scaffold63G21843 Striga asiatica
Solyc05g056380.3 Solanum lycopersicum
Solyc06g059860.3 Solanum lycopersicum
Solyc08g080860.4 Solanum lycopersicum
Sopen05g034770 Solanum pennellii
Sopen06g019940 Solanum pennellii
Sopen08g029160 Solanum pennellii
Sp1g18940 Schrenkiella parvula
Sp5g32140 Schrenkiella parvula
TAR376G0422 Trochodendron aralioides
TAR625G1102 Trochodendron aralioides
THA.LOC104812056 Tarenaya hassleriana
THA.LOC104813698 Tarenaya hassleriana
Thecc.01G134700 Theobroma cacao
Thecc.06G085300 Theobroma cacao
Thecc.06G085500 Theobroma cacao
Thecc.06G085900 Theobroma cacao
Thecc.08G137400 Theobroma cacao
Thhalv10008635m.g Eutrema salsugineum
Thhalv10019082m.g Eutrema salsugineum
TPR.G28237 Trifolium pratense
TPR.G30561 Trifolium pratense
TPR.G6299 Trifolium pratense
TWI32G0321 Tripterygium wilfordii
TWI34G0043 Tripterygium wilfordii
TWI60G0469 Tripterygium wilfordii
TWI75G0819 Tripterygium wilfordii
unitig_61.g26061 Utricularia gibba
vmacro00875 Vaccinium macrocarpon
VMungo0647G0886 Vigna mungo
VMungo1309G1474 Vigna mungo
VMungo1309G2413 Vigna mungo

User provided reference genes

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