Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p04910 Brassica napus
A01p31310 Brassica napus
Aa31LG8G10260 Aethionema arabicum
Aa31sc807G10 Aethionema arabicum
Actinidia24786 Actinidia chinensis
Actinidia29869 Actinidia chinensis
Actinidia35830 Actinidia chinensis
Actinidia38055 Actinidia chinensis
Ah.13g077800 Amaranthus hybridus
Ah.15g091750 Amaranthus hybridus
AL3G38580 Arabidopsis lyrata
AL7G18220 Arabidopsis lyrata
Aqoxy2G04043 Aquilegia oxysepala
Aqoxy6G01338 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CJD5DY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IRX0L3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N5DCQN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VRF1CM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WGY2X0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y4U51U Arachis hypogaea
AT3G23710 Arabidopsis thaliana
AT4G33350 Arabidopsis thaliana
ATR0100G028 Amborella trichopoda
ATR0561G132 Amborella trichopoda
Atru.chr13.686 Acer truncatum
Atru.chr3.1780 Acer truncatum
AUR62018534 Chenopodium quinoa
AUR62020883 Chenopodium quinoa
AUR62036810 Chenopodium quinoa
AUR62039898 Chenopodium quinoa
BcaB04g20426 Brassica carinata
BcaB07g33885 Brassica carinata
BcaC09g52141 Brassica carinata
BcaC09g52146 Brassica carinata
BcaNung02166 Brassica carinata
BolC1t00511H Brassica oleracea
BolC1t03947H Brassica oleracea
BraA01t00473Z Brassica rapa
BraA01t03257Z Brassica rapa
C01p05310 Brassica napus
C01p39920 Brassica napus
CAN.G1155.2 Capsicum annuum
CAN.G1684.1 Capsicum annuum
CAN.G371.14 Capsicum annuum
CANSAT78G1570 Cannabis sativa
CARHR099700 Cardamine hirsuta
CARHR241390 Cardamine hirsuta
Carub.0003s2401 Capsella rubella
Carub.0007s0714 Capsella rubella
Ca_15952_v3 Cicer arietinum L.
Ca_18006_v3 Cicer arietinum L.
CBR_g39650 Chara braunii
Cc00_g23540 Coffea canephora
Cc03_g09180 Coffea canephora
Cc10_g04220 Coffea canephora
CDE04G3524 Ceratophyllum demersum
CDE09G1133 Ceratophyllum demersum
Cfa008658 Carpinus fangiana
Cfa018545 Carpinus fangiana
Ciclev10002150m.g Citrus clementina
Ciclev10005278m.g Citrus clementina
CiPaw.01G113900 Carya illinoinensis
CiPaw.15G057700 Carya illinoinensis
ClCG05G019830 Citrullus lanatus
ClCG08G003630 Citrullus lanatus
ClCG08G003650 Citrullus lanatus
COL.COLO4_04284 Corchorus olitorius
Cpa.g.sc157.14 Carica papaya
Cpa.g.sc157.20 Carica papaya
Cpa.g.sc49.11 Carica papaya
Cre14.g625750 Chlamydomonas reinhardtii
CsaV3_4G034280 Cucumis sativus L.
CsaV3_6G003080 Cucumis sativus L.
CSS0004037 Camellia sinensis var. sinensis
CSS0027640 Camellia sinensis var. sinensis
CSS0039112 Camellia sinensis var. sinensis
CSS0041646 Camellia sinensis var. sinensis
DCAR_012771 Daucus carota
DCAR_021439 Daucus carota
Dinv32165 Davidia involucrata
Dinv39321 Davidia involucrata
Duzib041G0039 Durio zibethinus
Duzib093G1832 Durio zibethinus
Duzib116G0950 Durio zibethinus
Duzib151G0859 Durio zibethinus
Duzib268G0514 Durio zibethinus
ECA232G3804 Erigeron canadensis
EL10Ac3g07434 Beta vulgaris
EL10Ac7g17212 Beta vulgaris
Eucgr.F02353 Eucalyptus grandis
Eucgr.L00633 Eucalyptus grandis
FAN07G0904 Fragaria x ananassa
FAN12G3534 Fragaria x ananassa
FAN15G3236 Fragaria x ananassa
FAN20G0094 Fragaria x ananassa
FAN27G1213 Fragaria x ananassa
FvH4_2g34490 Fragaria vesca
FvH4_4g12880 Fragaria vesca
Glyma.04G038400 Glycine max
Glyma.05G150300 Glycine max
Glyma.06G039500 Glycine max
Glyma.08G107200 Glycine max
Glyma.18G140900 Glycine max
Gohir.A01G119300 Gossypium hirsutum
Gohir.A10G130100 Gossypium hirsutum
Gohir.D01G107500 Gossypium hirsutum
Gohir.D10G136200 Gossypium hirsutum
Gorai.002G131900 Gossypium raimondii
Gorai.011G151000 Gossypium raimondii
GSVIVG01009503001 Vitis vinifera
GSVIVG01031575001 Vitis vinifera
HanXRQChr09g0267661 Helianthus annuus
HanXRQChr14g0436511 Helianthus annuus
Haze_11679 Corylus avellana
Haze_17530 Corylus avellana
Hma1.2p1_1457F.1_g284670 Hydrangea macrophylla
HPP92_013630 Vanilla planifolia
HPP92_013635 Vanilla planifolia
HPP92_016722 Vanilla planifolia
Hund17571 Selenicereus undatus
Hund19023 Selenicereus undatus
Lalb_Chr08g0245311 Lupinus albus
Lalb_Chr12g0205811 Lupinus albus
Lj1g0017795 Lotus japonicus
Lj4A773G40 Lonicera japonica
Lj4g0007099 Lotus japonicus
Lsat_1_v5_gn_2_47761 Lactuca sativa
Lsat_1_v5_gn_3_85381 Lactuca sativa
Lsat_1_v5_gn_4_125040 Lactuca sativa
Lsat_1_v5_gn_4_173500 Lactuca sativa
Lsat_1_v5_gn_4_74160 Lactuca sativa
Lsat_1_v5_gn_8_107241 Lactuca sativa
Lsat_1_v5_gn_8_140160 Lactuca sativa
Manes.05G173500 Manihot esculenta
Manes.05G199300 Manihot esculenta
Manes.18G036600 Manihot esculenta
Mapoly0066s0055 Marchantia polymorpha
MBI02_g02986_MAGBIO Magnolia biondii
MBI07_g02622_MAGBIO Magnolia biondii
MD04G1021300 Malus domestica
MD08G1102400 Malus domestica
MD15G1083800 Malus domestica
Medtr3g101630 Medicago truncatula
Medtr8g081030 Medicago truncatula
MELO3C016748.2 Cucumis melo
MELO3C026126.2 Cucumis melo
Migut.C00585 Erythranthe guttata
Migut.G00949 Erythranthe guttata
Migut.N03124 Erythranthe guttata
Migut.N03125 Erythranthe guttata
Migut.N03126 Erythranthe guttata
Migut.N03128 Erythranthe guttata
Migut.N03129 Erythranthe guttata
MSTRG.25096 Avicennia marina
MSTRG.4258 Avicennia marina
Nitab4.5_0000037g0190 Nicotiana tabacum
Nitab4.5_0000287g0370 Nicotiana tabacum
Nitab4.5_0003427g0080 Nicotiana tabacum
Nn1g08127 Nelumbo nucifera
Nn5g30336 Nelumbo nucifera
Oeu034313.2 Olea europaea
Oeu043283.1 Olea europaea
Oeu043560.1 Olea europaea
Oeu059298.1 Olea europaea
Oeu059301.1 Olea europaea
Oeu059303.1 Olea europaea
Oeu059304.1 Olea europaea
Os06g0213200 Oryza sativa ssp. japonica
Os07g0290800 Oryza sativa ssp. japonica
Peaxi162Scf00252g00918 Petunia axillaris
Peaxi162Scf00286g01040 Petunia axillaris
PGR031G1294 Punica granatum
PGR142G0163 Punica granatum
PGSC0003DMG400008017 Solanum tuberosum
PGSC0003DMG400021879 Solanum tuberosum
Phvul.003G291300 Phaseolus vulgaris
Phvul.009G064600 Phaseolus vulgaris
Potri.002G126800 Populus trichocarpa
Potri.002G236000 Populus trichocarpa
Potri.014G030000 Populus trichocarpa
Pp3c16_18870 Physcomitrium patens
Pp3c6_7780 Physcomitrium patens
PRCOL_00002128 Prasinoderma coloniale
Prupe.1G170300 Prunus persica
Prupe.1G436300 Prunus persica
Psat5g042920 Pisum sativum
Psat7g076520 Pisum sativum
PSO017G1890 Papaver somniferum
PSO063G1354 Papaver somniferum
QL02p004922 Quercus lobata
QL02p005020 Quercus lobata
QL06p027085 Quercus lobata
RcHm_v2.0_Chr4g0412551 Rosa chinensis
RcHm_v2.0_Chr6g0307851 Rosa chinensis
Rhsim02G0068800 Rhododendron simsii
Rhsim07G0228600 Rhododendron simsii
Sabra02G0179800 Salix brachista
Sabra14G0020900 Salix brachista
SalBow2G0061 Salvia bowleyana
SalBow2G2169 Salvia bowleyana
SalBow7G0706 Salvia bowleyana
Sc15g0006160 Simmondsia chinensis
Sc15g0006240 Simmondsia chinensis
Sc25g0005750 Simmondsia chinensis
Sed0005111 Sechium edule
Sed0019564 Sechium edule
SEGI_05003 Sequoiadendron giganteum
SEGI_14149 Sequoiadendron giganteum
SGA_v2.0_scaffold17G08007 Striga asiatica
SGA_v2.0_scaffold345G49491 Striga asiatica
SGA_v2.0_scaffold43G16362 Striga asiatica
SMO367G0099 Selaginella moellendorffii
Solyc04g079000.4 Solanum lycopersicum
Solyc09g092530.4 Solanum lycopersicum
Sopen04g032580 Solanum pennellii
Sopen09g035430 Solanum pennellii
Sp3g21420 Schrenkiella parvula
Sp7g31050 Schrenkiella parvula
TAR362G0375 Trochodendron aralioides
TAR628G0976 Trochodendron aralioides
THA.LOC104804433 Tarenaya hassleriana
THA.LOC104808679 Tarenaya hassleriana
Thecc.04G191900 Theobroma cacao
Thecc.04G192000 Theobroma cacao
Thecc.08G008400 Theobroma cacao
Thhalv10002616m.g Eutrema salsugineum
Thhalv10025972m.g Eutrema salsugineum
TPR.G11829 Trifolium pratense
TPR.G28112 Trifolium pratense
TWI36G1436 Tripterygium wilfordii
TWI53G0024 Tripterygium wilfordii
vmacro04452 Vaccinium macrocarpon
vmacro04453 Vaccinium macrocarpon
vmacro15589 Vaccinium macrocarpon
VMungo0251G1691 Vigna mungo
VMungo0251G1985 Vigna mungo
VMungo1309G0289 Vigna mungo
Zm00001eb305250 Zea mays
Zm00001eb373200 Zea mays

User provided reference genes

Program Settings