Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00720 Brassica napus
A02p00370 Brassica napus
A04p16750 Brassica napus
A09p57690 Brassica napus
A10p27390 Brassica napus
Aa31LG6G15470 Aethionema arabicum
Aa31LG7G14520 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2834 Anthoceros agrestis
Actinidia28875 Actinidia chinensis
Actinidia32974 Actinidia chinensis
Ah.03g142570 Amaranthus hybridus
AL4G11720 Arabidopsis lyrata
AL6G20660 Arabidopsis lyrata
AL7G12020 Arabidopsis lyrata
Aqoxy5G01965 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.23HYFJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.96MT2N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HNK90J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NNJC7T Arachis hypogaea
AT2G22240 Arabidopsis thaliana
AT4G39800 Arabidopsis thaliana
AT5G10170 Arabidopsis thaliana
ATR0564G108 Amborella trichopoda
Atru.chr4.179 Acer truncatum
AUR62002031 Chenopodium quinoa
AUR62003767 Chenopodium quinoa
BcaB06g27726 Brassica carinata
BcaB08g35051 Brassica carinata
BcaB08g37134 Brassica carinata
BcaC02g08677 Brassica carinata
BcaC02g08724 Brassica carinata
BcaC03g13299 Brassica carinata
BcaC04g19329 Brassica carinata
BcaC07g41088 Brassica carinata
BcaNung00902 Brassica carinata
BcaNung07118 Brassica carinata
BolC1t00084H Brassica oleracea
BolC2t06395H Brassica oleracea
BolC4t26720H Brassica oleracea
BolC8t51655H Brassica oleracea
BolC8t51656H Brassica oleracea
BolC9t59495H Brassica oleracea
BraA01t00076Z Brassica rapa
BraA02t05022Z Brassica rapa
BraA04t17307Z Brassica rapa
BraA09t41162Z Brassica rapa
BraA10t44789Z Brassica rapa
C01p00820 Brassica napus
C02p04310 Brassica napus
C04p51300 Brassica napus
C08p40890 Brassica napus
C09p67270 Brassica napus
CAN.G383.5 Capsicum annuum
CAN.G878.2 Capsicum annuum
CANSAT01G2957 Cannabis sativa
CARHR113440 Cardamine hirsuta
CARHR203120 Cardamine hirsuta
CARHR246900 Cardamine hirsuta
Carub.0004s0138 Capsella rubella
Carub.0006s0863 Capsella rubella
Carub.0007s0171 Capsella rubella
Ca_16541_v3 Cicer arietinum L.
Ca_17719_v3 Cicer arietinum L.
CBR_g12025 Chara braunii
Cc07_g15530 Coffea canephora
CDE10G0249 Ceratophyllum demersum
CDE10G0865 Ceratophyllum demersum
Cfa002695 Carpinus fangiana
Cfa026784 Carpinus fangiana
Ciclev10002980m.g Citrus clementina
Ciclev10003601m.g Citrus clementina
Ciclev10025400m.g Citrus clementina
CiPaw.03G139200 Carya illinoinensis
CiPaw.04G097000 Carya illinoinensis
ClCG01G018950 Citrullus lanatus
ClCG07G009470 Citrullus lanatus
COL.COLO4_09918 Corchorus olitorius
COL.COLO4_09919 Corchorus olitorius
Cpa.g.sc557.2 Carica papaya
Cre03.g180250 Chlamydomonas reinhardtii
CsaV3_4G004810 Cucumis sativus L.
CsaV3_6G045630 Cucumis sativus L.
CsaV3_UNG190490 Cucumis sativus L.
CSS0043272 Camellia sinensis var. sinensis
DCAR_014243 Daucus carota
DCAR_032176 Daucus carota
DCAR_032177 Daucus carota
Dinv16309 Davidia involucrata
Dinv21932 Davidia involucrata
Dinv21933 Davidia involucrata
Duzib147G0234 Durio zibethinus
Duzib187G0839 Durio zibethinus
Duzib264G0615 Durio zibethinus
ECA246G5273 Erigeron canadensis
EL10Ac2g03316 Beta vulgaris
EL10Ac6g15072 Beta vulgaris
Eucgr.H04815 Eucalyptus grandis
FAN19G0525 Fragaria x ananassa
FAN23G2481 Fragaria x ananassa
FAN26G1458 Fragaria x ananassa
FvH4_1g21450 Fragaria vesca
Glyma.05G180600 Glycine max
Glyma.08G138200 Glycine max
Glyma.11G238800 Glycine max
Glyma.18G018600 Glycine max
Gohir.A02G132300 Gossypium hirsutum
Gohir.A11G199700 Gossypium hirsutum
Gohir.D03G043600 Gossypium hirsutum
Gohir.D11G224000 Gossypium hirsutum
Gorai.003G044700 Gossypium raimondii
Gorai.007G241600 Gossypium raimondii
GSVIVG01022158001 Vitis vinifera
HanXRQChr07g0192731 Helianthus annuus
Haze_24970 Corylus avellana
Haze_26250 Corylus avellana
Hma1.2p1_0011F.1_g007110 Hydrangea macrophylla
HPP92_019113 Vanilla planifolia
Hund13642 Selenicereus undatus
Hund16267 Selenicereus undatus
Lalb_Chr08g0231181 Lupinus albus
Lalb_Chr11g0075281 Lupinus albus
Lj2A553T26 Lonicera japonica
Lj4A881T27 Lonicera japonica
Lj4A883T23 Lonicera japonica
Lj4g0002220 Lotus japonicus
Lj6g0020051 Lotus japonicus
Lsat_1_v5_gn_5_41441 Lactuca sativa
Manes.12G137800 Manihot esculenta
Manes.13G091100 Manihot esculenta
Mapoly0020s0015 Marchantia polymorpha
MBI02_g30885_MAGBIO Magnolia biondii
MBI05_g00785_MAGBIO Magnolia biondii
MCO01G706 Micromonas commoda
MD00G1040900 Malus domestica
Medtr3g087590 Medicago truncatula
Medtr8g091320 Medicago truncatula
MELO3C007774.2 Cucumis melo
MELO3C017581.2 Cucumis melo
Migut.H02384 Erythranthe guttata
MSTRG.23330 Avicennia marina
MSTRG.2554 Avicennia marina
Nitab4.5_0000214g0020 Nicotiana tabacum
Nitab4.5_0000715g0160 Nicotiana tabacum
Nitab4.5_0001758g0020 Nicotiana tabacum
Nitab4.5_0005597g0020 Nicotiana tabacum
Nn1g05277 Nelumbo nucifera
Oeu032169.1 Olea europaea
Oeu056586.1 Olea europaea
Os03g0192700 Oryza sativa ssp. japonica
Os10g0369900 Oryza sativa ssp. japonica
Peaxi162Scf00183g00923 Petunia axillaris
Peaxi162Scf00295g00058 Petunia axillaris
PGR004G2360 Punica granatum
PGR102G3193 Punica granatum
PGSC0003DMG400021831 Solanum tuberosum
PGSC0003DMG400027916 Solanum tuberosum
Phvul.001G251000 Phaseolus vulgaris
Phvul.002G261700 Phaseolus vulgaris
Potri.005G078700 Populus trichocarpa
Potri.007G089000 Populus trichocarpa
Pp3c12_22200 Physcomitrium patens
Pp3c3_30990 Physcomitrium patens
Pp3c4_1020 Physcomitrium patens
PRCOL_00004431 Prasinoderma coloniale
Prupe.6G180500 Prunus persica
Psat5g089120 Pisum sativum
Psat7g052840 Pisum sativum
PSO133G0094 Papaver somniferum
PSO541G5685 Papaver somniferum
QL06p050218 Quercus lobata
RcHm_v2.0_Chr2g0115271 Rosa chinensis
Rhsim08G0009100 Rhododendron simsii
Sabra05G0064800 Salix brachista
Sabra07G0073400 Salix brachista
SalBow3G4596 Salvia bowleyana
SalBow5G1898 Salvia bowleyana
SalBow5G4593 Salvia bowleyana
SalBow8G4947 Salvia bowleyana
Sc03g0002250 Simmondsia chinensis
Sed0005492 Sechium edule
Sed0008629 Sechium edule
SEGI_05493 Sequoiadendron giganteum
SEGI_09768 Sequoiadendron giganteum
SEGI_28126 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31529 Striga asiatica
SGA_v2.0_scaffold47G17753 Striga asiatica
SHI11585 Sapria himalayana
SMO364G0721 Selaginella moellendorffii
Solyc04g050820.3 Solanum lycopersicum
Solyc04g050860.3 Solanum lycopersicum
Solyc04g054740.3 Solanum lycopersicum
Solyc05g051850.3 Solanum lycopersicum
Sopen04g021780 Solanum pennellii
Sopen04g021790 Solanum pennellii
Sopen04g021830 Solanum pennellii
Sopen04g021850 Solanum pennellii
Sopen04g021870 Solanum pennellii
Sopen04g024550 Solanum pennellii
Sopen04g024570 Solanum pennellii
Sopen05g030370 Solanum pennellii
Sp4g01280 Schrenkiella parvula
Sp6g33230 Schrenkiella parvula
Sp7g36090 Schrenkiella parvula
TAR375G0558 Trochodendron aralioides
TAR376G0172 Trochodendron aralioides
TAR381G0276 Trochodendron aralioides
TAR381G0645 Trochodendron aralioides
TAR381G1238 Trochodendron aralioides
TAR628G0021 Trochodendron aralioides
THA.LOC104804161 Tarenaya hassleriana
THA.LOC104807701 Tarenaya hassleriana
THA.LOC104824868 Tarenaya hassleriana
Thecc.01G105700 Theobroma cacao
Thhalv10000134m.g Eutrema salsugineum
Thhalv10015635m.g Eutrema salsugineum
Thhalv10025200m.g Eutrema salsugineum
TPR.G1515 Trifolium pratense
TPR.G1741 Trifolium pratense
TPR.G2238 Trifolium pratense
TPR.G22494 Trifolium pratense
TPR.G22788 Trifolium pratense
TPR.G30765 Trifolium pratense
TPR.G31133 Trifolium pratense
TPR.G31135 Trifolium pratense
TPR.G3572 Trifolium pratense
TWI74G1457 Tripterygium wilfordii
TWI77G0076 Tripterygium wilfordii
unitig_899.g14542 Utricularia gibba
vmacro18613 Vaccinium macrocarpon
VMungo0251G3361 Vigna mungo
VMungo1383G0258 Vigna mungo
Zm00001eb008360 Zea mays
Zm00001eb027730 Zea mays
Zm00001eb223960 Zea mays
Zm00001eb276490 Zea mays
Zm00001eb283240 Zea mays
Zm00001eb283250 Zea mays
Zm00001eb378070 Zea mays
Zm00001eb401220 Zea mays
Zm00001eb408420 Zea mays

User provided reference genes

Program Settings