Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p05030 Brassica napus
A04p17440 Brassica napus
A10p26260 Brassica napus
Aa31LG3G15710 Aethionema arabicum
Aa31LG7G13920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3204 Anthoceros agrestis
Actinidia15726 Actinidia chinensis
Actinidia16417 Actinidia chinensis
Ah.09g223820 Amaranthus hybridus
Ah.10g037280 Amaranthus hybridus
Ah.16g105130 Amaranthus hybridus
Ah.16g105150 Amaranthus hybridus
AL3G48210 Arabidopsis lyrata
AL4G12460 Arabidopsis lyrata
AL6G22150 Arabidopsis lyrata
Aqoxy6G02533 Aquilegia oxysepala
Aqoxy7G01654 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9L0EV7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F9UFYB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H64LDR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IXS3J7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P7A8AZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R3YPZT Arachis hypogaea
AT2G22870 Arabidopsis thaliana
AT5G11480 Arabidopsis thaliana
ATR0315G008 Amborella trichopoda
ATR0739G207 Amborella trichopoda
Atru.chr3.1045 Acer truncatum
Atru.chr3.1046 Acer truncatum
Atru.chr7.2166 Acer truncatum
Atru.chr7.2168 Acer truncatum
AUR62009347 Chenopodium quinoa
AUR62014573 Chenopodium quinoa
AUR62023026 Chenopodium quinoa
AUR62027363 Chenopodium quinoa
AUR62039388 Chenopodium quinoa
AUR62043356 Chenopodium quinoa
BcaB01g05482 Brassica carinata
BcaB06g27847 Brassica carinata
BcaB08g37055 Brassica carinata
BcaC02g08588 Brassica carinata
BcaC04g19222 Brassica carinata
BolC3t13089H Brassica oleracea
BolC4t26797H Brassica oleracea
BolC9t59363H Brassica oleracea
BraA03t09837Z Brassica rapa
BraA04t17367Z Brassica rapa
BraA10t44683Z Brassica rapa
C03p05760 Brassica napus
C04p52210 Brassica napus
C09p65380 Brassica napus
CAN.G1830.4 Capsicum annuum
CAN.G797.8 Capsicum annuum
CANSAT78G2436 Cannabis sativa
CARHR114190 Cardamine hirsuta
CARHR201740 Cardamine hirsuta
Carub.0004s0200 Capsella rubella
Carub.0006s0994 Capsella rubella
Ca_15622_v3 Cicer arietinum L.
Ca_18545_v3 Cicer arietinum L.
Ca_28657_v3 Cicer arietinum L.
Ca_29971_v3 Cicer arietinum L.
CBR_g371 Chara braunii
Cc08_g08950 Coffea canephora
Cc10_g12600 Coffea canephora
CDE04G2191 Ceratophyllum demersum
CDE05G3112 Ceratophyllum demersum
Ciclev10009000m.g Citrus clementina
Ciclev10026170m.g Citrus clementina
CiPaw.07G207700 Carya illinoinensis
CiPaw.16G049000 Carya illinoinensis
ClCG02G012180 Citrullus lanatus
ClCG11G013980 Citrullus lanatus
COL.COLO4_01813 Corchorus olitorius
COL.COLO4_11603 Corchorus olitorius
COL.COLO4_18701 Corchorus olitorius
Cpa.g.sc129.79 Carica papaya
Cpa.g.sc78.84 Carica papaya
Cre12.g519700 Chlamydomonas reinhardtii
Cre12.g524950 Chlamydomonas reinhardtii
CsaV3_2G016330 Cucumis sativus L.
CsaV3_3G047350 Cucumis sativus L.
CSS0002466 Camellia sinensis var. sinensis
CSS0026283 Camellia sinensis var. sinensis
CSS0039934 Camellia sinensis var. sinensis
CSS0045668 Camellia sinensis var. sinensis
CSS0048194 Camellia sinensis var. sinensis
CSS0048608 Camellia sinensis var. sinensis
DCAR_004502 Daucus carota
DCAR_025818 Daucus carota
Dinv14223 Davidia involucrata
Dinv26951 Davidia involucrata
Duzib150G0929 Durio zibethinus
Duzib168G0247 Durio zibethinus
Duzib187G1371 Durio zibethinus
Duzib264G1047 Durio zibethinus
EL10Ac2g04082 Beta vulgaris
EL10As4g23415 Beta vulgaris
Eucgr.C00645 Eucalyptus grandis
Eucgr.E01422 Eucalyptus grandis
FAN15G0319 Fragaria x ananassa
FAN19G2081 Fragaria x ananassa
FAN20G0698 Fragaria x ananassa
FAN23G0038 Fragaria x ananassa
FAN24G3011 Fragaria x ananassa
FAN26G0853 Fragaria x ananassa
FAN27G2254 Fragaria x ananassa
FAN28G0266 Fragaria x ananassa
FvH4_1g18030 Fragaria vesca
FvH4_2g36200 Fragaria vesca
Glyma.04G079900 Glycine max
Glyma.06G081500 Glycine max
Glyma.07G196900 Glycine max
Glyma.11G186500 Glycine max
Glyma.13G179400 Glycine max
Gohir.A06G095200 Gossypium hirsutum
Gohir.A11G212900 Gossypium hirsutum
Gohir.D06G095200 Gossypium hirsutum
Gohir.D11G210300 Gossypium hirsutum
Gorai.007G225600 Gossypium raimondii
Gorai.010G109600 Gossypium raimondii
GSVIVG01002339001 Vitis vinifera
GSVIVG01035676001 Vitis vinifera
HanXRQChr02g0048051 Helianthus annuus
HanXRQChr12g0376301 Helianthus annuus
Haze_15263 Corylus avellana
Haze_21837 Corylus avellana
Hma1.2p1_0140F.1_g063535 Hydrangea macrophylla
Hma1.2p1_0140F.1_g063560 Hydrangea macrophylla
Hma1.2p1_1760F.1_g301260 Hydrangea macrophylla
HPP92_007792 Vanilla planifolia
HPP92_011416 Vanilla planifolia
Hund16411 Selenicereus undatus
Lalb_Chr08g0243291 Lupinus albus
Lalb_Chr16g0383771 Lupinus albus
Lj1g0028106 Lotus japonicus
Lj2C1166G4 Lonicera japonica
Lj3P984T17 Lonicera japonica
Lj4A164G32 Lonicera japonica
Lj4g0003930 Lotus japonicus
Lj8A604G30 Lonicera japonica
Lsat_1_v5_gn_3_86620 Lactuca sativa
Manes.12G116400 Manihot esculenta
Manes.16G066300 Manihot esculenta
Mapoly0012s0036 Marchantia polymorpha
MBI04_g22011_MAGBIO Magnolia biondii
MCO12G212 Micromonas commoda
MCO13G146 Micromonas commoda
MD08G1119000 Malus domestica
MD15G1098300 Malus domestica
MD17G1236700 Malus domestica
Medtr3g109540 Medicago truncatula
Medtr4g088800 Medicago truncatula
MELO3C003590.2 Cucumis melo
MELO3C020844.2 Cucumis melo
Migut.A00243 Erythranthe guttata
Migut.L00425 Erythranthe guttata
MSTRG.25894 Avicennia marina
Nitab4.5_0000052g0070 Nicotiana tabacum
Nitab4.5_0000680g0160 Nicotiana tabacum
Nitab4.5_0003338g0040 Nicotiana tabacum
Nitab4.5_0012393g0010 Nicotiana tabacum
Nn2g14607 Nelumbo nucifera
Oeu026023.1 Olea europaea
Oeu034001.1 Olea europaea
Oeu041403.1 Olea europaea
Oeu054205.1 Olea europaea
Os01g0732200 Oryza sativa ssp. japonica
Os03g0232500 Oryza sativa ssp. japonica
Peaxi162Scf00500g00313 Petunia axillaris
Peaxi162Scf00523g00625 Petunia axillaris
PGR031G3298 Punica granatum
PGR102G3097 Punica granatum
PGSC0003DMG400012984 Solanum tuberosum
PGSC0003DMG400014512 Solanum tuberosum
Phvul.002G228800 Phaseolus vulgaris
Phvul.009G105600 Phaseolus vulgaris
Potri.006G243200 Populus trichocarpa
Potri.007G006300 Populus trichocarpa
Potri.014G006501 Populus trichocarpa
Potri.014G007450 Populus trichocarpa
Potri.018G037000 Populus trichocarpa
Pp3c13_24190 Physcomitrium patens
Pp3c3_19710 Physcomitrium patens
Pp3c5_16801 Physcomitrium patens
PRCOL_00003486 Prasinoderma coloniale
Prupe.1G453200 Prunus persica
Prupe.6G218100 Prunus persica
Psat0s2458g0040 Pisum sativum
Psat7g113880 Pisum sativum
PSO210G1033 Papaver somniferum
PSO210G6070 Papaver somniferum
PSO541G0096 Papaver somniferum
PSO675G3570 Papaver somniferum
QL06p039079 Quercus lobata
QL12p026325 Quercus lobata
RcHm_v2.0_Chr2g0108521 Rosa chinensis
RcHm_v2.0_Chr6g0305691 Rosa chinensis
Rhsim07G0153500 Rhododendron simsii
Rhsim08G0092300 Rhododendron simsii
Sabra06G0190300 Salix brachista
Sabra07G0004700 Salix brachista
Sabra18G0037700 Salix brachista
SalBow4G2545 Salvia bowleyana
SalBow5G0101 Salvia bowleyana
Sc07g0000470 Simmondsia chinensis
Sc09g0009020 Simmondsia chinensis
Sed0004739 Sechium edule
Sed0007143 Sechium edule
SEGI_07939 Sequoiadendron giganteum
SEGI_10585 Sequoiadendron giganteum
SEGI_15248 Sequoiadendron giganteum
SEGI_21000 Sequoiadendron giganteum
SEGI_35384 Sequoiadendron giganteum
SGA_v2.0_scaffold174G39234 Striga asiatica
SGA_v2.0_scaffold243G44302 Striga asiatica
SMO164G0114 Selaginella moellendorffii
Solyc08g068200.4 Solanum lycopersicum
Solyc09g008730.3 Solanum lycopersicum
Sopen08g022060 Solanum pennellii
Sopen09g003520 Solanum pennellii
Sp4g01920 Schrenkiella parvula
Sp6g32120 Schrenkiella parvula
TAR376G0375 Trochodendron aralioides
TAR626G1956 Trochodendron aralioides
TAR628G0486 Trochodendron aralioides
Thecc.01G075100 Theobroma cacao
Thecc.06G224500 Theobroma cacao
Thecc.09G039300 Theobroma cacao
Thhalv10000265m.g Eutrema salsugineum
Thhalv10014135m.g Eutrema salsugineum
TPR.G12013 Trifolium pratense
TPR.G1328 Trifolium pratense
TWI34G0386 Tripterygium wilfordii
TWI74G1019 Tripterygium wilfordii
unitig_748.g8478 Utricularia gibba
vmacro05358 Vaccinium macrocarpon
vmacro18020 Vaccinium macrocarpon
VMungo0251G3644 Vigna mungo
VMungo1309G0865 Vigna mungo
Zm00001eb154100 Zea mays
Zm00001eb399460 Zea mays

User provided reference genes

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