Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p24330 Brassica napus
A06p21220 Brassica napus
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis
Actinidia00806 Actinidia chinensis
Actinidia00807 Actinidia chinensis
Actinidia03766 Actinidia chinensis
Actinidia03767 Actinidia chinensis
Actinidia07087 Actinidia chinensis
Actinidia07088 Actinidia chinensis
Actinidia14088 Actinidia chinensis
Actinidia33850 Actinidia chinensis
Actinidia37270 Actinidia chinensis
Ah.08g215040 Amaranthus hybridus
AL1G11620 Arabidopsis lyrata
AL5G24520 Arabidopsis lyrata
Aqoxy181s003 Aquilegia oxysepala
Aqoxy4G00130 Aquilegia oxysepala
Aqoxy4G03112 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea
AT1G02290 Arabidopsis thaliana
AT3G45830 Arabidopsis thaliana
ATR0594G221 Amborella trichopoda
ATR1136G190 Amborella trichopoda
Atru.chr3.3777 Acer truncatum
Atru.chr5.818 Acer truncatum
Atru.chr8.2509 Acer truncatum
AUR62001859 Chenopodium quinoa
AUR62009654 Chenopodium quinoa
AUR62042292 Chenopodium quinoa
AUR62043938 Chenopodium quinoa
BcaB01g01053 Brassica carinata
BcaB02g11017 Brassica carinata
BcaC01g01947 Brassica carinata
BcaC02g11494 Brassica carinata
BolC3t19280H Brassica oleracea
BraA06t25210Z Brassica rapa
C03p70400 Brassica napus
C04p14740 Brassica napus
CAN.G84.3 Capsicum annuum
CANSAT54G2256 Cannabis sativa
CARHR001590 Cardamine hirsuta
CARHR154140 Cardamine hirsuta
Carub.0001s0132 Capsella rubella
Carub.0005s1167 Capsella rubella
Ca_01364_v3 Cicer arietinum L.
CBR_g17672 Chara braunii
Cc01_g11990 Coffea canephora
Cc06_g03300 Coffea canephora
CDE02G2912 Ceratophyllum demersum
CDE09G0123 Ceratophyllum demersum
Cfa011411 Carpinus fangiana
Ciclev10011193m.g Citrus clementina
Ciclev10019422m.g Citrus clementina
Ciclev10027686m.g Citrus clementina
CiPaw.13G102800 Carya illinoinensis
CiPaw.13G103000 Carya illinoinensis
ClCG02G020560 Citrullus lanatus
COL.COLO4_10308 Corchorus olitorius
COL.COLO4_18410 Corchorus olitorius
COL.COLO4_23086 Corchorus olitorius
Cpa.g.sc139.9 Carica papaya
Cpa.g.sc57.57 Carica papaya
CsaV3_6G022000 Cucumis sativus L.
CSS0016445 Camellia sinensis var. sinensis
CSS0021829 Camellia sinensis var. sinensis
DCAR_018860 Daucus carota
DCAR_018861 Daucus carota
Dinv18704 Davidia involucrata
Dinv32829 Davidia involucrata
Dinv37233 Davidia involucrata
Dinv37234 Davidia involucrata
Duzib128G1501 Durio zibethinus
Duzib133G0713 Durio zibethinus
Duzib138G1744 Durio zibethinus
Duzib168G0993 Durio zibethinus
Duzib170G0969 Durio zibethinus
ECA248G3817 Erigeron canadensis
EL10Ac7g15933 Beta vulgaris
Eucgr.B02434 Eucalyptus grandis
FAN05G4048 Fragaria x ananassa
FAN09G2794 Fragaria x ananassa
FAN11G1910 Fragaria x ananassa
FAN14G4413 Fragaria x ananassa
FAN16G1875 Fragaria x ananassa
FAN21G1667 Fragaria x ananassa
FAN25G2944 Fragaria x ananassa
FvH4_3g34430 Fragaria vesca
FvH4_6g14850 Fragaria vesca
FvH4_6g14860 Fragaria vesca
Glyma.13G330500 Glycine max
Glyma.15G043500 Glycine max
Gohir.A03G036400 Gossypium hirsutum
Gohir.A05G099600 Gossypium hirsutum
Gohir.A07G132900 Gossypium hirsutum
Gohir.A08G000105 Gossypium hirsutum
Gohir.A11G103100 Gossypium hirsutum
Gohir.D03G131800 Gossypium hirsutum
Gohir.D05G099500 Gossypium hirsutum
Gohir.D07G137200 Gossypium hirsutum
Gohir.D08G009200 Gossypium hirsutum
Gohir.D11G107600 Gossypium hirsutum
Gohir.D13G096325 Gossypium hirsutum
Gorai.001G149400 Gossypium raimondii
Gorai.001G248600 Gossypium raimondii
Gorai.003G138700 Gossypium raimondii
Gorai.004G002400 Gossypium raimondii
Gorai.007G115300 Gossypium raimondii
Gorai.009G103400 Gossypium raimondii
GSVIVG01025073001 Vitis vinifera
GSVIVG01025574001 Vitis vinifera
GSVIVG01028273001 Vitis vinifera
GSVIVG01028281001 Vitis vinifera
GSVIVG01028282001 Vitis vinifera
HanXRQChr04g0110371 Helianthus annuus
HanXRQChr14g0429221 Helianthus annuus
Haze_23986 Corylus avellana
Haze_23987 Corylus avellana
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla
Hma1.2p1_0111F.1_g053470 Hydrangea macrophylla
Hma1.2p1_0111F.1_g053510 Hydrangea macrophylla
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla
HPP92_000643 Vanilla planifolia
HPP92_000703 Vanilla planifolia
HPP92_000704 Vanilla planifolia
HPP92_000705 Vanilla planifolia
HPP92_001698 Vanilla planifolia
HPP92_017853 Vanilla planifolia
Hund18948 Selenicereus undatus
Lalb_Chr14g0374891 Lupinus albus
Lalb_Chr14g0374911 Lupinus albus
Lalb_Chr22g0350071 Lupinus albus
Lalb_Chr22g0350101 Lupinus albus
Lj2E1045T0 Lonicera japonica
Lj2P104T63 Lonicera japonica
Lj3g0004926 Lotus japonicus
Lj3P975T65 Lonicera japonica
Lsat_1_v5_gn_5_166940 Lactuca sativa
Manes.04G028200 Manihot esculenta
Manes.05G006100 Manihot esculenta
Manes.11G137500 Manihot esculenta
Mapoly0002s0042 Marchantia polymorpha
MBI05_g19645_MAGBIO Magnolia biondii
MBI14_g42162_MAGBIO Magnolia biondii
MCO07G693 Micromonas commoda
MD03G1106200 Malus domestica
MD11G1118300 Malus domestica
Medtr2g096000 Medicago truncatula
MELO3C025710.2 Cucumis melo
Migut.D02157 Erythranthe guttata
Migut.N02644 Erythranthe guttata
MSTRG.18613 Avicennia marina
Nitab4.5_0000202g0400 Nicotiana tabacum
Nitab4.5_0002380g0080 Nicotiana tabacum
Nitab4.5_0003784g0030 Nicotiana tabacum
Nitab4.5_0011917g0020 Nicotiana tabacum
Nn1g08405 Nelumbo nucifera
Nn2g10571 Nelumbo nucifera
Nn2g12814 Nelumbo nucifera
Oeu041006.2 Olea europaea
Os05g0117864 Oryza sativa ssp. japonica
Os08g0500500 Oryza sativa ssp. japonica
Peaxi162Scf00472g00082 Petunia axillaris
Peaxi162Scf00836g00219 Petunia axillaris
PGR102G1726 Punica granatum
PGSC0003DMG400015522 Solanum tuberosum
PGSC0003DMG402010988 Solanum tuberosum
Phvul.L002003 Phaseolus vulgaris
Potri.001G233800 Populus trichocarpa
Potri.002G184000 Populus trichocarpa
Potri.009G026100 Populus trichocarpa
Potri.014G109600 Populus trichocarpa
Pp3c14_23770 Physcomitrium patens
Pp3c14_23790 Physcomitrium patens
Pp3c17_22910 Physcomitrium patens
Prupe.6G088700 Prunus persica
Prupe.6G245300 Prunus persica
Psat5g281800 Pisum sativum
PSO063G0629 Papaver somniferum
PSO384G0780 Papaver somniferum
PSO782G3303 Papaver somniferum
PSO832G3558 Papaver somniferum
QL01p035172 Quercus lobata
RcHm_v2.0_Chr5g0062031 Rosa chinensis
Rhsim01G0216000 Rhododendron simsii
Rhsim01G0223400 Rhododendron simsii
RhsimUnG0121200 Rhododendron simsii
Sabra02G0131700 Salix brachista
Sabra09G0017300 Salix brachista
Sabra14G0080900 Salix brachista
Sabra16G0140100 Salix brachista
SalBow3G0437 Salvia bowleyana
Sc01g0003750 Simmondsia chinensis
Sc12g0001880 Simmondsia chinensis
Sed0008185 Sechium edule
Sed0021885 Sechium edule
SEGI_10134 Sequoiadendron giganteum
SEGI_18775 Sequoiadendron giganteum
SGA_v2.0_scaffold194G40747 Striga asiatica
SHI05981 Sapria himalayana
SMO118G0514 Selaginella moellendorffii
Solyc11g072810.2 Solanum lycopersicum
Sopen06g015670 Solanum pennellii
Sopen06g015680 Solanum pennellii
Sopen06g015690 Solanum pennellii
Sopen06g015700 Solanum pennellii
Sopen06g015720 Solanum pennellii
Sopen10g033890 Solanum pennellii
Sopen10g033900 Solanum pennellii
Sopen10g033910 Solanum pennellii
Sopen10g033920 Solanum pennellii
Sopen11g030480 Solanum pennellii
Sp1g01370 Schrenkiella parvula
Sp5g15700 Schrenkiella parvula
TAR369G1034 Trochodendron aralioides
TAR623G1741 Trochodendron aralioides
TAR626G0883 Trochodendron aralioides
TAR627G0713 Trochodendron aralioides
TAR627G1028 Trochodendron aralioides
TAR633G1422 Trochodendron aralioides
THA.LOC104801336 Tarenaya hassleriana
THA.LOC104810821 Tarenaya hassleriana
THA.LOC104814856 Tarenaya hassleriana
Thecc.01G328900 Theobroma cacao
Thecc.05G049900 Theobroma cacao
Thecc.09G332800 Theobroma cacao
Thhalv10002373m.g Eutrema salsugineum
Thhalv10009871m.g Eutrema salsugineum
TPR.G11598 Trifolium pratense
TWI59G1182 Tripterygium wilfordii
TWI75G0055 Tripterygium wilfordii
TWI79G0463 Tripterygium wilfordii
unitig_736.g22426 Utricularia gibba
unitig_736.g22427 Utricularia gibba
unitig_899.g14902 Utricularia gibba
vmacro14495 Vaccinium macrocarpon
vmacro14496 Vaccinium macrocarpon
vmacro20088 Vaccinium macrocarpon
VMungo1080G0735 Vigna mungo
Zm00001eb199580 Zea mays
Zm00001eb265670 Zea mays
Zm00001eb355300 Zea mays

User provided reference genes

Program Settings