Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p08630 Brassica napus
A03p03830 Brassica napus
Aa31LG2G21030 Aethionema arabicum
Aa31LG3G18160 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.863 Anthoceros agrestis
Actinidia35983 Actinidia chinensis
Actinidia39749 Actinidia chinensis
Ah.06g191610 Amaranthus hybridus
Ah.10g026180 Amaranthus hybridus
AL6G18860 Arabidopsis lyrata
AL7G23000 Arabidopsis lyrata
Aqoxy5G04226 Aquilegia oxysepala
Aqoxy7G03927 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.20K2MK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8C5UM8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AAP527 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U2SVZE Arachis hypogaea
AT4G29400 Arabidopsis thaliana
AT5G08400 Arabidopsis thaliana
ATR0124G028 Amborella trichopoda
ATR0789G028 Amborella trichopoda
Atru.chr11.15 Acer truncatum
Atru.chr7.1523 Acer truncatum
AUR62004767 Chenopodium quinoa
AUR62024880 Chenopodium quinoa
AUR62030667 Chenopodium quinoa
AUR62037484 Chenopodium quinoa
BcaB01g05600 Brassica carinata
BcaB01g05602 Brassica carinata
BcaC03g13227 Brassica carinata
BcaC09g51725 Brassica carinata
BolC1t00968H Brassica oleracea
BolC2t06317H Brassica oleracea
BolC3t12964H Brassica oleracea
BraA01t00813Z Brassica rapa
BraA02t04956Z Brassica rapa
BraA03t09730Z Brassica rapa
C01p10100 Brassica napus
C02p03590 Brassica napus
C03p04310 Brassica napus
CAN.G1010.14 Capsicum annuum
CAN.G774.42 Capsicum annuum
CANSAT64G0550 Cannabis sativa
CANSAT78G1074 Cannabis sativa
CARHR204640 Cardamine hirsuta
CARHR237220 Cardamine hirsuta
Carub.0006s0731 Capsella rubella
Carub.0007s1114 Capsella rubella
Ca_04128_v3 Cicer arietinum L.
Ca_24175_v3 Cicer arietinum L.
Ca_24177_v3 Cicer arietinum L.
Ca_24178_v3 Cicer arietinum L.
CBR_g48743 Chara braunii
Cc05_g01600 Coffea canephora
Cc06_g10950 Coffea canephora
CDE04G1744 Ceratophyllum demersum
CDE07G1356 Ceratophyllum demersum
Cfa003135 Carpinus fangiana
Cfa018666 Carpinus fangiana
Ciclev10009026m.g Citrus clementina
Ciclev10015943m.g Citrus clementina
CiPaw.03G219900 Carya illinoinensis
CiPaw.15G000300 Carya illinoinensis
ClCG03G015860 Citrullus lanatus
ClCG11G012820 Citrullus lanatus
COL.COLO4_08314 Corchorus olitorius
COL.COLO4_18243 Corchorus olitorius
Cpa.g.sc3389.1 Carica papaya
Cpa.g.sc774.2 Carica papaya
Cre06.g252350 Chlamydomonas reinhardtii
CsaV3_1G040120 Cucumis sativus L.
CsaV3_5G029220 Cucumis sativus L.
CsaV3_UNG050390 Cucumis sativus L.
CSS0024328 Camellia sinensis var. sinensis
CSS0042051 Camellia sinensis var. sinensis
CSS0042934 Camellia sinensis var. sinensis
CSS0046292 Camellia sinensis var. sinensis
DCAR_028449 Daucus carota
DCAR_028629 Daucus carota
Dinv36731 Davidia involucrata
Dinv44185 Davidia involucrata
Duzib168G0811 Durio zibethinus
Duzib187G0612 Durio zibethinus
ECA234G3685 Erigeron canadensis
ECA248G0144 Erigeron canadensis
EL10Ac2g02593 Beta vulgaris
EL10Ac4g08923 Beta vulgaris
EL10Ac4g08924 Beta vulgaris
EL10Ac7g15856 Beta vulgaris
EL10Ac7g15865 Beta vulgaris
EL10As14g24083 Beta vulgaris
Eucgr.C00930 Eucalyptus grandis
Eucgr.G02618 Eucalyptus grandis
Eucgr.L03122 Eucalyptus grandis
Eucgr.L03533 Eucalyptus grandis
FAN01G1618 Fragaria x ananassa
FAN06G1501 Fragaria x ananassa
FAN19G2701 Fragaria x ananassa
FAN23G0939 Fragaria x ananassa
FAN26G0008 Fragaria x ananassa
FAN26G1704 Fragaria x ananassa
FAN28G1439 Fragaria x ananassa
FvH4_1g06800 Fragaria vesca
FvH4_7g04330 Fragaria vesca
Glyma.03G000100 Glycine max
Glyma.08G230800 Glycine max
Glyma.09G078300 Glycine max
Glyma.19G000500 Glycine max
Gohir.A03G168600 Gossypium hirsutum
Gohir.A08G244600 Gossypium hirsutum
Gohir.D02G191800 Gossypium hirsutum
Gohir.D08G265500 Gossypium hirsutum
Gorai.004G283500 Gossypium raimondii
Gorai.005G214600 Gossypium raimondii
GSVIVG01015249001 Vitis vinifera
GSVIVG01034332001 Vitis vinifera
HanXRQChr11g0343671 Helianthus annuus
HanXRQChr12g0355311 Helianthus annuus
Haze_25868 Corylus avellana
Hma1.2p1_0886F.1_g232720 Hydrangea macrophylla
Hma1.2p1_0886F.1_g232730 Hydrangea macrophylla
Hma1.2p1_1074F.1_g254330 Hydrangea macrophylla
Hma1.2p1_2738F.1_g327690 Hydrangea macrophylla
HPP92_013011 Vanilla planifolia
HPP92_021120 Vanilla planifolia
Hund13135 Selenicereus undatus
Lalb_Chr03g0041051 Lupinus albus
Lalb_Chr19g0132441 Lupinus albus
Lj2g0024534 Lotus japonicus
Lj3g0007870 Lotus japonicus
Lj4C318T6 Lonicera japonica
Lj4P318T15 Lonicera japonica
Lj7A671T41 Lonicera japonica
Lj7P671T19 Lonicera japonica
Lj8C597G1 Lonicera japonica
Lj8C603G2 Lonicera japonica
Lsat_1_v5_gn_1_77541 Lactuca sativa
Lsat_1_v5_gn_5_146061 Lactuca sativa
Manes.14G174550 Manihot esculenta
Manes.16G105200 Manihot esculenta
Mapoly0012s0199 Marchantia polymorpha
MBI01_g16576_MAGBIO Magnolia biondii
MBI06_g37979_MAGBIO Magnolia biondii
MCO05G078 Micromonas commoda
MD15G1202400 Malus domestica
MD16G1005400 Malus domestica
Medtr6g004030 Medicago truncatula
Medtr8g046180 Medicago truncatula
Medtr8g446720 Medicago truncatula
MELO3C011773.2 Cucumis melo
MELO3C015440.2 Cucumis melo
Migut.G01158 Erythranthe guttata
Migut.K00573 Erythranthe guttata
MSTRG.10584 Avicennia marina
MSTRG.9729 Avicennia marina
Nitab4.5_0000822g0130 Nicotiana tabacum
Nitab4.5_0000878g0030 Nicotiana tabacum
Nitab4.5_0007607g0040 Nicotiana tabacum
Nitab4.5_0017134g0010 Nicotiana tabacum
Nitab4.5_0017633g0010 Nicotiana tabacum
Nitab4.5_0029443g0010 Nicotiana tabacum
Nn4g25010 Nelumbo nucifera
Nn8g38946 Nelumbo nucifera
Oeu020498.1 Olea europaea
Oeu039826.4 Olea europaea
Os01g0558800 Oryza sativa ssp. japonica
Os02g0827600 Oryza sativa ssp. japonica
Peaxi162Scf00078g01324 Petunia axillaris
Peaxi162Scf00126g00237 Petunia axillaris
PGR142G3147 Punica granatum
PGR142G3716 Punica granatum
PGSC0003DMG400012207 Solanum tuberosum
PGSC0003DMG400028767 Solanum tuberosum
Phvul.004G000700 Phaseolus vulgaris
Phvul.006G061200 Phaseolus vulgaris
Potri.010G255300 Populus trichocarpa
Potri.014G148300 Populus trichocarpa
Pp3c16_12240 Physcomitrium patens
Pp3c6_24940 Physcomitrium patens
Prupe.1G352300 Prunus persica
Prupe.7G214800 Prunus persica
Psat1g053160 Pisum sativum
Psat6g101840 Pisum sativum
PSO063G6795 Papaver somniferum
PSO210G0738 Papaver somniferum
PSO210G6301 Papaver somniferum
PSO782G2630 Papaver somniferum
QL01p000192 Quercus lobata
QL02p063487 Quercus lobata
QL05p043325 Quercus lobata
RcHm_v2.0_Chr2g0091901 Rosa chinensis
RcHm_v2.0_Chr2g0092571 Rosa chinensis
RcHm_v2.0_Chr2g0093991 Rosa chinensis
RcHm_v2.0_Chr4g0447251 Rosa chinensis
Rhsim03G0234800 Rhododendron simsii
Rhsim09G0026700 Rhododendron simsii
RhsimUnG0195900 Rhododendron simsii
Sabra10G0198700 Salix brachista
Sabra14G0112000 Salix brachista
SalBow1G1827 Salvia bowleyana
SalBow1G2138 Salvia bowleyana
SalBow6G4106 Salvia bowleyana
Sc10g0006670 Simmondsia chinensis
Sc10g0006680 Simmondsia chinensis
Sc18g0001770 Simmondsia chinensis
Sed0007853 Sechium edule
Sed0010089 Sechium edule
SEGI_21508 Sequoiadendron giganteum
SEGI_31354 Sequoiadendron giganteum
SEGI_38194 Sequoiadendron giganteum
SEGI_41375 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32962 Striga asiatica
SGA_v2.0_scaffold2G00995 Striga asiatica
SMO367G0121 Selaginella moellendorffii
Solyc08g081080.3 Solanum lycopersicum
Solyc10g045310.2 Solanum lycopersicum
Sopen08g029400 Solanum pennellii
Sopen10g014480 Solanum pennellii
Sp6g34540 Schrenkiella parvula
Sp7g27280 Schrenkiella parvula
TAR371G0890 Trochodendron aralioides
TAR383G0978 Trochodendron aralioides
THA.LOC104803991 Tarenaya hassleriana
THA.LOC104818388 Tarenaya hassleriana
Thecc.02G150700 Theobroma cacao
Thecc.09G094400 Theobroma cacao
Thhalv10014240m.g Eutrema salsugineum
Thhalv10025901m.g Eutrema salsugineum
TPR.G23044 Trifolium pratense
TPR.G25240 Trifolium pratense
TWI53G0312 Tripterygium wilfordii
TWI63G1263 Tripterygium wilfordii
unitig_8.g4696 Utricularia gibba
unitig_8.g4698 Utricularia gibba
unitig_92.g28213 Utricularia gibba
vmacro06272 Vaccinium macrocarpon
vmacro21853 Vaccinium macrocarpon
vmacro21854 Vaccinium macrocarpon
VMungo0357G0001 Vigna mungo
VMungo0540G2429 Vigna mungo
VMungo0540G2471 Vigna mungo
Zm00001eb190770 Zea mays
Zm00001eb356760 Zea mays

User provided reference genes

Program Settings