Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p22590 Brassica napus
A08p11550 Brassica napus
A09p67470 Brassica napus
Aa31LG8G8920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3704 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3708 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3826 Anthoceros agrestis
Actinidia05696 Actinidia chinensis
Actinidia08502 Actinidia chinensis
Actinidia23482 Actinidia chinensis
Actinidia23638 Actinidia chinensis
Actinidia36973 Actinidia chinensis
Actinidia40181 Actinidia chinensis
Actinidia40182 Actinidia chinensis
AL1G15180 Arabidopsis lyrata
AL7G40880 Arabidopsis lyrata
Aqoxy5G00492 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.67HHVI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BWG3M1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GJ9KXL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VC7L6H Arachis hypogaea
AT1G05360 Arabidopsis thaliana
AT4G14950 Arabidopsis thaliana
ATR0332G014 Amborella trichopoda
Atru.chr4.2500 Acer truncatum
AUR62038106 Chenopodium quinoa
AUR62038625 Chenopodium quinoa
BcaB02g07848 Brassica carinata
BcaB04g18270 Brassica carinata
BcaC07g37862 Brassica carinata
BcaC07g42134 Brassica carinata
BcaC09g50177 Brassica carinata
BcaNung00316 Brassica carinata
BolC1t02745H Brassica oleracea
BolC4t27169H Brassica oleracea
BolC8t48253H Brassica oleracea
BolC8t52704H Brassica oleracea
BraA01t02172Z Brassica rapa
BraA08t33147Z Brassica rapa
BraA09t42075Z Brassica rapa
C01p28090 Brassica napus
C04p67240 Brassica napus
C04p67250 Brassica napus
C08p51750 Brassica napus
CAN.G1034.40 Capsicum annuum
CAN.G907.18 Capsicum annuum
CANSAT78G1349 Cannabis sativa
CARHR004870 Cardamine hirsuta
CARHR221570 Cardamine hirsuta
Carub.0001s0470 Capsella rubella
Carub.0007s2715 Capsella rubella
Ca_10915_v3 Cicer arietinum L.
Ca_24391_v3 Cicer arietinum L.
CBR_g41708 Chara braunii
Cc02_g33330 Coffea canephora
Cc02_g33340 Coffea canephora
Cc03_g03570 Coffea canephora
CDE05G0048 Ceratophyllum demersum
CDE05G1348 Ceratophyllum demersum
Cfa015624 Carpinus fangiana
Ciclev10006686m.g Citrus clementina
CiPaw.01G164500 Carya illinoinensis
CiPaw.02G096100 Carya illinoinensis
ClCG06G006090 Citrullus lanatus
COL.COLO4_03486 Corchorus olitorius
COL.COLO4_13455 Corchorus olitorius
Cpa.g.sc48.62 Carica papaya
Cpa.g.sc58.129 Carica papaya
Cre06.g272000 Chlamydomonas reinhardtii
CsaV3_6G038180 Cucumis sativus L.
CSS0018202 Camellia sinensis var. sinensis
CSS0018504 Camellia sinensis var. sinensis
CSS0032770 Camellia sinensis var. sinensis
CSS0041693 Camellia sinensis var. sinensis
DCAR_002392 Daucus carota
DCAR_027193 Daucus carota
DCAR_029406 Daucus carota
DCAR_030626 Daucus carota
Dinv13061 Davidia involucrata
Dinv23937 Davidia involucrata
Dinv38435 Davidia involucrata
Dinv40295 Davidia involucrata
Dinv44513 Davidia involucrata
Duzib052G0021 Durio zibethinus
Duzib128G0679 Durio zibethinus
Duzib151G1060 Durio zibethinus
ECA234G3533 Erigeron canadensis
ECA240G0741 Erigeron canadensis
EL10Ac3g06435 Beta vulgaris
EL10Ac4g09350 Beta vulgaris
EL10Ac6g14578 Beta vulgaris
EL10Ac7g16300 Beta vulgaris
Eucgr.B01089 Eucalyptus grandis
Eucgr.H03536 Eucalyptus grandis
FAN02G2929 Fragaria x ananassa
FAN05G3402 Fragaria x ananassa
FAN05G4814 Fragaria x ananassa
FAN07G1863 Fragaria x ananassa
FAN09G3377 Fragaria x ananassa
FAN12G3484 Fragaria x ananassa
FAN17G0619 Fragaria x ananassa
FAN22G0278 Fragaria x ananassa
FvH4_4g15240 Fragaria vesca
FvH4_6g06030 Fragaria vesca
Glyma.01G238700 Glycine max
Glyma.11G004900 Glycine max
Gohir.A02G030800 Gossypium hirsutum
Gohir.A09G214800 Gossypium hirsutum
Gohir.A10G114700 Gossypium hirsutum
Gohir.A10G114800 Gossypium hirsutum
Gohir.D02G037700 Gossypium hirsutum
Gohir.D09G217300 Gossypium hirsutum
Gohir.D10G152100 Gossypium hirsutum
Gohir.D10G152150 Gossypium hirsutum
Gohir.D10G152201 Gossypium hirsutum
Gorai.005G041600 Gossypium raimondii
Gorai.006G238000 Gossypium raimondii
Gorai.011G169300 Gossypium raimondii
Gorai.011G169400 Gossypium raimondii
Gorai.011G169500 Gossypium raimondii
GSVIVG01017942001 Vitis vinifera
HanXRQChr04g0111881 Helianthus annuus
HanXRQChr09g0247841 Helianthus annuus
HanXRQChr10g0303161 Helianthus annuus
HanXRQChr15g0469361 Helianthus annuus
Haze_00919 Corylus avellana
Hma1.2p1_0511F.1_g168880 Hydrangea macrophylla
Hma1.2p1_0517F.1_g170940 Hydrangea macrophylla
Hma1.2p1_0928F.1_g237730 Hydrangea macrophylla
HPP92_009591 Vanilla planifolia
Hund12145 Selenicereus undatus
Lalb_Chr05g0210941 Lupinus albus
Lalb_Chr09g0319801 Lupinus albus
Lalb_Chr16g0376411 Lupinus albus
Lj1g0028213 Lotus japonicus
Lj3A738G69 Lonicera japonica
Lj5g0002180 Lotus japonicus
Lj6C599G10 Lonicera japonica
Lsat_1_v5_gn_2_74201 Lactuca sativa
Lsat_1_v5_gn_5_148860 Lactuca sativa
Lsat_1_v5_gn_6_13621 Lactuca sativa
Lsat_1_v5_gn_7_62701 Lactuca sativa
Lsat_1_v5_gn_7_66620 Lactuca sativa
Lsat_1_v5_gn_8_120661 Lactuca sativa
Lsat_1_v5_gn_9_106021 Lactuca sativa
Lsat_1_v5_gn_9_52700 Lactuca sativa
Manes.03G180300 Manihot esculenta
Manes.15G027500 Manihot esculenta
Mapoly0033s0161 Marchantia polymorpha
MBI01_g40487_MAGBIO Magnolia biondii
MBI04_g29617_MAGBIO Magnolia biondii
MCO09G578 Micromonas commoda
MD04G1204700 Malus domestica
MD12G1218400 Malus domestica
MD13G1190900 Malus domestica
MD16G1191100 Malus domestica
Medtr1g104680 Medicago truncatula
Medtr5g006110 Medicago truncatula
MELO3C014483.2 Cucumis melo
Migut.G00325 Erythranthe guttata
Migut.N00176 Erythranthe guttata
MSTRG.21849 Avicennia marina
MSTRG.24743 Avicennia marina
Nitab4.5_0000137g0130 Nicotiana tabacum
Nitab4.5_0000795g0090 Nicotiana tabacum
Nitab4.5_0005541g0030 Nicotiana tabacum
Nitab4.5_0005754g0050 Nicotiana tabacum
Nitab4.5_0012434g0010 Nicotiana tabacum
Nn1g02270 Nelumbo nucifera
Nn4g26278 Nelumbo nucifera
Oeu034360.2 Olea europaea
Oeu039746.1 Olea europaea
Oeu042799.1 Olea europaea
Oeu046220.1 Olea europaea
Os01g0778700 Oryza sativa ssp. japonica
Os07g0571500 Oryza sativa ssp. japonica
Peaxi162Scf00037g00521 Petunia axillaris
Peaxi162Scf00437g00011 Petunia axillaris
PGR004G1907 Punica granatum
PGR142G0657 Punica granatum
PGSC0003DMG400024740 Solanum tuberosum
PGSC0003DMG400031833 Solanum tuberosum
Phvul.002G046700 Phaseolus vulgaris
Potri.005G032200 Populus trichocarpa
Potri.008G151300 Populus trichocarpa
Potri.010G089600 Populus trichocarpa
Potri.013G021700 Populus trichocarpa
Pp3c16_21940 Physcomitrium patens
Pp3c5_24130 Physcomitrium patens
PRCOL_00002912 Prasinoderma coloniale
Prupe.1G011300 Prunus persica
Prupe.6G324700 Prunus persica
Psat4g226600 Pisum sativum
Psat6g208080 Pisum sativum
PSO210G2913 Papaver somniferum
PSO832G2549 Papaver somniferum
QL06p003097 Quercus lobata
RcHm_v2.0_Chr3g0454991 Rosa chinensis
RcHm_v2.0_Chr4g0400671 Rosa chinensis
RcHm_v2.0_Chr4g0416611 Rosa chinensis
Rhsim02G0023000 Rhododendron simsii
Rhsim04G0206000 Rhododendron simsii
Sabra05G0034700 Salix brachista
Sabra08G0115100 Salix brachista
Sabra10G0053700 Salix brachista
SalBow2G0518 Salvia bowleyana
SalBow5G3332 Salvia bowleyana
SalBow5G5063 Salvia bowleyana
Sc13g0004310 Simmondsia chinensis
Sc19g0004260 Simmondsia chinensis
Sed0009452 Sechium edule
Sed0013933 Sechium edule
SEGI_01612 Sequoiadendron giganteum
SGA_v2.0_scaffold257G45728 Striga asiatica
SMO228G0127 Selaginella moellendorffii
Solyc01g099140.4 Solanum lycopersicum
Solyc09g075850.3 Solanum lycopersicum
Sopen01g042700 Solanum pennellii
Sopen09g030660 Solanum pennellii
Sp1g04230 Schrenkiella parvula
Sp7g13100 Schrenkiella parvula
TAR362G0586 Trochodendron aralioides
TAR365G0345 Trochodendron aralioides
TAR633G0014 Trochodendron aralioides
TAR636G0870 Trochodendron aralioides
THA.LOC104800967 Tarenaya hassleriana
THA.LOC104803023 Tarenaya hassleriana
THA.LOC104808536 Tarenaya hassleriana
Thecc.04G228700 Theobroma cacao
Thecc.05G302300 Theobroma cacao
Thhalv10007747m.g Eutrema salsugineum
Thhalv10025321m.g Eutrema salsugineum
TPR.G37959 Trifolium pratense
TPR.G5486 Trifolium pratense
TWI09G0837 Tripterygium wilfordii
TWI53G1252 Tripterygium wilfordii
unitig_736.g22492 Utricularia gibba
vmacro15330 Vaccinium macrocarpon
VMungo1215G0035 Vigna mungo
Zm00001eb126600 Zea mays
Zm00001eb151530 Zea mays
Zm00001eb167320 Zea mays
Zm00001eb243100 Zea mays
Zm00001eb324970 Zea mays

User provided reference genes

Program Settings