Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p14380 Brassica napus
A10p12250 Brassica napus
Aa31LG3G10850 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1945 Anthoceros agrestis
Actinidia10732 Actinidia chinensis
Actinidia35340 Actinidia chinensis
Ah.04g165860 Amaranthus hybridus
Ah.09g234980 Amaranthus hybridus
Ah.15g099030 Amaranthus hybridus
AL8G30400 Arabidopsis lyrata
Aqoxy1G03237 Aquilegia oxysepala
Aqoxy4G01819 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1KZE5K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6V868Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F70XYS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J0W1HE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KDA1J3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PW7H5Q Arachis hypogaea
AT5G54930 Arabidopsis thaliana
ATR0752G057 Amborella trichopoda
Atru.chr10.2205 Acer truncatum
Atru.chr2.3346 Acer truncatum
AUR62015761 Chenopodium quinoa
AUR62020454 Chenopodium quinoa
BcaB01g04335 Brassica carinata
BcaB08g35859 Brassica carinata
BcaC01g06330 Brassica carinata
BcaC04g20286 Brassica carinata
BolC3t14096H Brassica oleracea
BolC9t57415H Brassica oleracea
BraA03t10735Z Brassica rapa
BraA10t43320Z Brassica rapa
C03p16760 Brassica napus
C09p45460 Brassica napus
CAN.G337.127 Capsicum annuum
CAN.G616.3 Capsicum annuum
CAN.G882.4 Capsicum annuum
CANSAT56G1217 Cannabis sativa
CANSAT56G2759 Cannabis sativa
CARHR268270 Cardamine hirsuta
Carub.0008s1523 Capsella rubella
Ca_14724_v3 Cicer arietinum L.
Ca_21089_v3 Cicer arietinum L.
Ca_30197_v3 Cicer arietinum L.
CBR_g20298 Chara braunii
Cc05_g13730 Coffea canephora
CDE05G1686 Ceratophyllum demersum
CDE11G0234 Ceratophyllum demersum
Cfa000236 Carpinus fangiana
Cfa020354 Carpinus fangiana
Ciclev10008484m.g Citrus clementina
Ciclev10014916m.g Citrus clementina
CiPaw.09G090500 Carya illinoinensis
CiPaw.10G070000 Carya illinoinensis
CiPaw.11G188700 Carya illinoinensis
ClCG10G005440 Citrullus lanatus
COL.COLO4_09656 Corchorus olitorius
COL.COLO4_31756 Corchorus olitorius
Cpa.g.sc198.43 Carica papaya
Cpa.g.sc97.10 Carica papaya
CsaV3_3G005180 Cucumis sativus L.
CSS0006812 Camellia sinensis var. sinensis
CSS0016010 Camellia sinensis var. sinensis
CSS0035682 Camellia sinensis var. sinensis
DCAR_010056 Daucus carota
DCAR_022558 Daucus carota
DCAR_024922 Daucus carota
DCAR_028173 Daucus carota
Dinv13882 Davidia involucrata
Dinv22266 Davidia involucrata
Dinv40750 Davidia involucrata
Duzib160G0202 Durio zibethinus
Duzib192G0666 Durio zibethinus
Duzib213G1073 Durio zibethinus
Duzib235G0377 Durio zibethinus
Duzib268G0579 Durio zibethinus
Duzib268G0745 Durio zibethinus
Duzib268G1313 Durio zibethinus
Duzib268G1474 Durio zibethinus
ECA234G4767 Erigeron canadensis
ECA236G3848 Erigeron canadensis
ECA248G1648 Erigeron canadensis
EL10Ac4g07820 Beta vulgaris
Eucgr.F03463 Eucalyptus grandis
FAN11G1348 Fragaria x ananassa
FAN16G1110 Fragaria x ananassa
FAN21G2490 Fragaria x ananassa
FAN25G1270 Fragaria x ananassa
FAN25G2301 Fragaria x ananassa
FvH4_3g02310 Fragaria vesca
FvH4_3g22550 Fragaria vesca
Glyma.07G259600 Glycine max
Glyma.08G315200 Glycine max
Glyma.13G205500 Glycine max
Glyma.17G014700 Glycine max
Glyma.18G098900 Glycine max
Gohir.A05G169400 Gossypium hirsutum
Gohir.A06G148000 Gossypium hirsutum
Gohir.A10G013500 Gossypium hirsutum
Gohir.A13G138400 Gossypium hirsutum
Gohir.D05G172600 Gossypium hirsutum
Gohir.D06G153900 Gossypium hirsutum
Gohir.D10G013400 Gossypium hirsutum
Gohir.D13G143200 Gossypium hirsutum
Gorai.009G177800 Gossypium raimondii
Gorai.010G179900 Gossypium raimondii
Gorai.011G015100 Gossypium raimondii
Gorai.011G015200 Gossypium raimondii
Gorai.013G160100 Gossypium raimondii
GSVIVG01037639001 Vitis vinifera
HanXRQChr05g0138091 Helianthus annuus
HanXRQChr15g0494361 Helianthus annuus
HanXRQChr16g0515031 Helianthus annuus
HanXRQChr16g0516021 Helianthus annuus
HanXRQChr17g0557341 Helianthus annuus
Haze_06786 Corylus avellana
Haze_09668 Corylus avellana
Hma1.2p1_0673F.1_g201310 Hydrangea macrophylla
Hma1.2p1_1222F.1_g268160 Hydrangea macrophylla
HPP92_011138 Vanilla planifolia
Hund23254 Selenicereus undatus
Lalb_Chr12g0196101 Lupinus albus
Lalb_Chr15g0081021 Lupinus albus
Lalb_Chr15g0087541 Lupinus albus
Lalb_Chr20g0113921 Lupinus albus
Lj1A871G92 Lonicera japonica
Lj4g0005787 Lotus japonicus
Lj6g0022854 Lotus japonicus
Lsat_1_v5_gn_1_128681 Lactuca sativa
Lsat_1_v5_gn_4_59720 Lactuca sativa
Lsat_1_v5_gn_7_108620 Lactuca sativa
Manes.15G072500 Manihot esculenta
Manes.17G038100 Manihot esculenta
Mapoly0051s0025 Marchantia polymorpha
Mapoly0051s0027 Marchantia polymorpha
MBI02_g22111_MAGBIO Magnolia biondii
MBI18_g18574_MAGBIO Magnolia biondii
MD03G1202000 Malus domestica
MD05G1343900 Malus domestica
MD10G1319800 Malus domestica
MD11G1219200 Malus domestica
Medtr3g051280 Medicago truncatula
Medtr4g131990 Medicago truncatula
MELO3C025384.2 Cucumis melo
Migut.H01830 Erythranthe guttata
Migut.M01307 Erythranthe guttata
Migut.M01770 Erythranthe guttata
MSTRG.12970 Avicennia marina
MSTRG.15151 Avicennia marina
MSTRG.15981 Avicennia marina
MSTRG.6914 Avicennia marina
Nitab4.5_0000653g0020 Nicotiana tabacum
Nitab4.5_0000749g0180 Nicotiana tabacum
Nitab4.5_0000994g0020 Nicotiana tabacum
Nitab4.5_0001913g0060 Nicotiana tabacum
Nitab4.5_0003343g0010 Nicotiana tabacum
Nitab4.5_0003812g0010 Nicotiana tabacum
Nitab4.5_0009280g0030 Nicotiana tabacum
Nitab4.5_0009691g0030 Nicotiana tabacum
Nn7g37163 Nelumbo nucifera
Oeu005533.1 Olea europaea
Oeu005534.1 Olea europaea
Oeu062685.1 Olea europaea
Oeu062690.1 Olea europaea
Peaxi162Scf00203g00136 Petunia axillaris
Peaxi162Scf00964g00003 Petunia axillaris
Peaxi162Scf01097g00313 Petunia axillaris
PGR031G0146 Punica granatum
PGR042G0813 Punica granatum
PGR083G2439 Punica granatum
PGSC0003DMG400001090 Solanum tuberosum
PGSC0003DMG400011263 Solanum tuberosum
PGSC0003DMG400022218 Solanum tuberosum
PGSC0003DMG400035363 Solanum tuberosum
Phvul.003G077800 Phaseolus vulgaris
Phvul.006G042200 Phaseolus vulgaris
Potri.001G422966 Populus trichocarpa
Potri.004G017000 Populus trichocarpa
Potri.011G001901 Populus trichocarpa
Potri.011G138700 Populus trichocarpa
Pp3c1_9860 Physcomitrium patens
Pp3c2_38010 Physcomitrium patens
Prupe.4G022600 Prunus persica
Prupe.4G212100 Prunus persica
Psat4g007400 Pisum sativum
Psat5g180440 Pisum sativum
PSO541G3675 Papaver somniferum
PSO675G8341 Papaver somniferum
QL05p073529 Quercus lobata
QL05p073767 Quercus lobata
QL08p010527 Quercus lobata
RcHm_v2.0_Chr5g0003491 Rosa chinensis
RcHm_v2.0_Chr5g0003501 Rosa chinensis
RcHm_v2.0_Chr5g0039291 Rosa chinensis
Rhsim06G0216600 Rhododendron simsii
Rhsim13G0154800 Rhododendron simsii
RhsimUnG0251000 Rhododendron simsii
Sabra04G0009300 Salix brachista
Sabra11G0124300 Salix brachista
Sabra16G0289500 Salix brachista
Sc07g0002790 Simmondsia chinensis
Sc16g0006120 Simmondsia chinensis
Sc17g0007270 Simmondsia chinensis
Sed0012412 Sechium edule
Sed0012974 Sechium edule
SEGI_01204 Sequoiadendron giganteum
SEGI_04509 Sequoiadendron giganteum
SEGI_28031 Sequoiadendron giganteum
SGA_v2.0_scaffold4G01919 Striga asiatica
SGA_v2.0_scaffold8G04311 Striga asiatica
Solyc03g031710.3 Solanum lycopersicum
Solyc07g064560.4 Solanum lycopersicum
Solyc10g005250.3 Solanum lycopersicum
Solyc12g005110.2 Solanum lycopersicum
Sopen03g005580 Solanum pennellii
Sopen07g032740 Solanum pennellii
Sopen10g001240 Solanum pennellii
Sopen12g001110 Solanum pennellii
Sp6g16890 Schrenkiella parvula
TAR624G0885 Trochodendron aralioides
TAR626G0765 Trochodendron aralioides
TAR626G1524 Trochodendron aralioides
TAR629G0506 Trochodendron aralioides
THA.LOC104811939 Tarenaya hassleriana
THA.LOC104813422 Tarenaya hassleriana
THA.LOC104825122 Tarenaya hassleriana
Thecc.06G087800 Theobroma cacao
Thecc.06G218900 Theobroma cacao
Thecc.07G038800 Theobroma cacao
Thhalv10014307m.g Eutrema salsugineum
TPR.G16587 Trifolium pratense
TPR.G34769 Trifolium pratense
TWI38G1408 Tripterygium wilfordii
TWI38G2193 Tripterygium wilfordii
TWI39G1258 Tripterygium wilfordii
unitig_0.g2391 Utricularia gibba
unitig_26.g9957 Utricularia gibba
unitig_578.g15998 Utricularia gibba
unitig_749.g13965 Utricularia gibba
unitig_92.g28117 Utricularia gibba
vmacro09718 Vaccinium macrocarpon
vmacro11727 Vaccinium macrocarpon
VMungo0540G1905 Vigna mungo
VMungo1215G0908 Vigna mungo

User provided reference genes

Program Settings