Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p42310 Brassica napus
A05p00080 Brassica napus
Aa31LG1G29450 Aethionema arabicum
Aa31LG8G8210 Aethionema arabicum
Actinidia23449 Actinidia chinensis
Actinidia24306 Actinidia chinensis
Actinidia28675 Actinidia chinensis
Actinidia28676 Actinidia chinensis
AL3G35640 Arabidopsis lyrata
AL4G47630 Arabidopsis lyrata
Aqoxy5G00569 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0PF214 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2F1JWB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5FIK84 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8FP50U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D36X90 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NP34H2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q48K4T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QC4E5N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S9FSJL Arachis hypogaea
AT2G48030 Arabidopsis thaliana
AT3G21530 Arabidopsis thaliana
ATR0580G088 Amborella trichopoda
Atru.chr4.2707 Acer truncatum
Atru.chr4.2708 Acer truncatum
Atru.chr5.1324 Acer truncatum
AUR62033684 Chenopodium quinoa
AUR62034576 Chenopodium quinoa
BcaB02g08730 Brassica carinata
BcaB04g19173 Brassica carinata
BcaC01g03499 Brassica carinata
BcaC02g12555 Brassica carinata
BcaC02g12556 Brassica carinata
BNapus_Darmor_BZH_scaffold_188p00020 Brassica napus
BolC3t17461H Brassica oleracea
BolSC55t61234H Brassica oleracea
BraA03t13382Z Brassica rapa
BraA05t19004Z Brassica rapa
C03p51760 Brassica napus
CANSAT25G0516 Cannabis sativa
CANSAT78G1433 Cannabis sativa
CARHR097480 Cardamine hirsuta
CARHR143420 Cardamine hirsuta
Carub.0003s2157 Capsella rubella
Carub.0004s3075 Capsella rubella
Carub.0327s0001 Capsella rubella
Ca_00587_v3 Cicer arietinum L.
Ca_10392_v3 Cicer arietinum L.
Cc01_g19890 Coffea canephora
Cc03_g02710 Coffea canephora
CDE09G0958 Ceratophyllum demersum
CDE12G0185 Ceratophyllum demersum
Cfa006074 Carpinus fangiana
Ciclev10005134m.g Citrus clementina
Ciclev10019778m.g Citrus clementina
CiPaw.01G156400 Carya illinoinensis
CiPaw.07G096500 Carya illinoinensis
CiPaw.08G101900 Carya illinoinensis
ClCG05G005620 Citrullus lanatus
ClCG07G000130 Citrullus lanatus
COL.COLO4_05204 Corchorus olitorius
COL.COLO4_09150 Corchorus olitorius
COL.COLO4_12200 Corchorus olitorius
Cpa.g.sc16.76 Carica papaya
Cpa.g.sc9.134 Carica papaya
CsaV3_3G013960 Cucumis sativus L.
CsaV3_6G036950 Cucumis sativus L.
CSS0002316 Camellia sinensis var. sinensis
CSS0025450 Camellia sinensis var. sinensis
CSS0029139 Camellia sinensis var. sinensis
CSS0043373 Camellia sinensis var. sinensis
DCAR_005826 Daucus carota
DCAR_027129 Daucus carota
Dinv11269 Davidia involucrata
Dinv38347 Davidia involucrata
Dinv44454 Davidia involucrata
Duzib133G0554 Durio zibethinus
Duzib138G0761 Durio zibethinus
Duzib151G0088 Durio zibethinus
Duzib212G0551 Durio zibethinus
ECA240G1257 Erigeron canadensis
ECA248G2230 Erigeron canadensis
EL10Ac7g17186 Beta vulgaris
Eucgr.B01211 Eucalyptus grandis
Eucgr.H01547 Eucalyptus grandis
Eucgr.H01550 Eucalyptus grandis
Eucgr.H01553 Eucalyptus grandis
Eucgr.H01558 Eucalyptus grandis
Eucgr.H01562 Eucalyptus grandis
Eucgr.H01575 Eucalyptus grandis
Eucgr.H01581 Eucalyptus grandis
Eucgr.H01586 Eucalyptus grandis
Eucgr.H01588 Eucalyptus grandis
Eucgr.H01598 Eucalyptus grandis
FAN15G0237 Fragaria x ananassa
FAN20G0997 Fragaria x ananassa
FAN24G3100 Fragaria x ananassa
FAN27G0923 Fragaria x ananassa
FvH4_2g24230 Fragaria vesca
Glyma.02G150500 Glycine max
Glyma.02G150550 Glycine max
Glyma.03G149500 Glycine max
Glyma.10G023500 Glycine max
Glyma.10G135667 Glycine max
Glyma.13G212300 Glycine max
Glyma.15G100400 Glycine max
Glyma.19G152500 Glycine max
Gohir.A08G184900 Gossypium hirsutum
Gohir.A10G105500 Gossypium hirsutum
Gohir.A11G119500 Gossypium hirsutum
Gohir.D08G203000 Gossypium hirsutum
Gohir.D10G163100 Gossypium hirsutum
Gohir.D11G124300 Gossypium hirsutum
Gorai.004G215000 Gossypium raimondii
Gorai.007G133200 Gossypium raimondii
Gorai.011G182000 Gossypium raimondii
GSVIVG01011054001 Vitis vinifera
GSVIVG01017848001 Vitis vinifera
HanXRQChr01g0003211 Helianthus annuus
HanXRQChr03g0080921 Helianthus annuus
HanXRQChr11g0338481 Helianthus annuus
Haze_01013 Corylus avellana
Haze_01016 Corylus avellana
Haze_04776 Corylus avellana
Hma1.2p1_0257F.1_g103900 Hydrangea macrophylla
Hma1.2p1_0643F.1_g194520 Hydrangea macrophylla
Hma1.2p1_2318F.1_g319760 Hydrangea macrophylla
HPP92_013659 Vanilla planifolia
HPP92_013677 Vanilla planifolia
HPP92_018425 Vanilla planifolia
Hund05362 Selenicereus undatus
Hund20658 Selenicereus undatus
Lalb_Chr02g0142951 Lupinus albus
Lalb_Chr06g0163211 Lupinus albus
Lalb_Chr15g0087161 Lupinus albus
Lj1A42G56 Lonicera japonica
Lj2A1180G58 Lonicera japonica
Lj2A1219T38 Lonicera japonica
Lj3C806T8 Lonicera japonica
Lj5g0002276 Lotus japonicus
Lj5g0009693 Lotus japonicus
Lj6g0014033 Lotus japonicus
Lsat_1_v5_gn_1_82920 Lactuca sativa
Lsat_1_v5_gn_5_188541 Lactuca sativa
Lsat_1_v5_gn_5_51421 Lactuca sativa
Manes.01G211500 Manihot esculenta
Manes.05G071500 Manihot esculenta
Manes.15G020000 Manihot esculenta
Mapoly0052s0116 Marchantia polymorpha
MBI19_g30165_MAGBIO Magnolia biondii
MBI19_g41918_MAGBIO Magnolia biondii
MBI19_g41919_MAGBIO Magnolia biondii
MD03G1272200 Malus domestica
MD11G1292900 Malus domestica
Medtr1g089630 Medicago truncatula
Medtr2g020860 Medicago truncatula
MELO3C006587.2 Cucumis melo
MELO3C014418.2 Cucumis melo
Migut.D00998 Erythranthe guttata
Migut.G00241 Erythranthe guttata
Migut.O00774 Erythranthe guttata
MSTRG.10032 Avicennia marina
MSTRG.21586 Avicennia marina
MSTRG.24767 Avicennia marina
Nitab4.5_0000059g0240 Nicotiana tabacum
Nitab4.5_0001323g0130 Nicotiana tabacum
Nitab4.5_0006860g0020 Nicotiana tabacum
Nitab4.5_0010926g0010 Nicotiana tabacum
Nn3g21195 Nelumbo nucifera
Nn4g26121 Nelumbo nucifera
Oeu001444.1 Olea europaea
Oeu037659.1 Olea europaea
Oeu044810.1 Olea europaea
Os03g0360800 Oryza sativa ssp. japonica
Os07g0645500 Oryza sativa ssp. japonica
Peaxi162Scf02085g00005 Petunia axillaris
PGR031G1806 Punica granatum
PGR119G1978 Punica granatum
PGSC0003DMG400003812 Solanum tuberosum
Phvul.001G147400 Phaseolus vulgaris
Phvul.006G158700 Phaseolus vulgaris
Phvul.007G168200 Phaseolus vulgaris
Potri.008G198100 Populus trichocarpa
Potri.014G136900 Populus trichocarpa
Prupe.8G248300 Prunus persica
Psat1g185840 Pisum sativum
Psat6g169640 Pisum sativum
PSO210G3808 Papaver somniferum
PSO832G1225 Papaver somniferum
QL06p006327 Quercus lobata
QL12p023058 Quercus lobata
QL93p0279_0049 Quercus lobata
RcHm_v2.0_Chr6g0292041 Rosa chinensis
Rhsim04G0213700 Rhododendron simsii
Rhsim13G0020800 Rhododendron simsii
Sabra08G0162300 Salix brachista
Sabra14G0103300 Salix brachista
SalBow2G0611 Salvia bowleyana
SalBow3G0120 Salvia bowleyana
Sc05g0005230 Simmondsia chinensis
Sc13g0003780 Simmondsia chinensis
Sed0003590 Sechium edule
Sed0006424 Sechium edule
Sed0011380 Sechium edule
SEGI_24678 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33337 Striga asiatica
SGA_v2.0_scaffold15G07480 Striga asiatica
SGA_v2.0_scaffold172G38995 Striga asiatica
SGA_v2.0_scaffold1G00436 Striga asiatica
SGA_v2.0_scaffold62G21565 Striga asiatica
SGA_v2.0_scaffold89G27580 Striga asiatica
SMO144G0126 Selaginella moellendorffii
Solyc01g080480.4 Solanum lycopersicum
Solyc09g074210.3 Solanum lycopersicum
Sopen01g032280 Solanum pennellii
Sopen09g029030 Solanum pennellii
Sp3g19570 Schrenkiella parvula
Sp4g29930 Schrenkiella parvula
TAR362G0780 Trochodendron aralioides
TAR365G0323 Trochodendron aralioides
TAR633G2516 Trochodendron aralioides
THA.LOC104802217 Tarenaya hassleriana
THA.LOC104807106 Tarenaya hassleriana
THA.LOC104817622 Tarenaya hassleriana
THA.LOC104821760 Tarenaya hassleriana
Thecc.01G286400 Theobroma cacao
Thecc.04G273000 Theobroma cacao
Thhalv10001446m.g Eutrema salsugineum
Thhalv10022320m.g Eutrema salsugineum
TPR.G16957 Trifolium pratense
TPR.G18037 Trifolium pratense
TWI09G1060 Tripterygium wilfordii
TWI14G0002 Tripterygium wilfordii
TWI59G0833 Tripterygium wilfordii
unitig_0.g1192 Utricularia gibba
unitig_0.g1193 Utricularia gibba
unitig_22.g6330 Utricularia gibba
vmacro02534 Vaccinium macrocarpon
vmacro08233 Vaccinium macrocarpon
vmacro22298 Vaccinium macrocarpon
VMungo0540G0046 Vigna mungo
VMungo0720G1936 Vigna mungo
VMungo1383G2403 Vigna mungo
Zm00001eb329280 Zea mays

User provided reference genes

Program Settings