Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p22330 Brassica napus
A03p34160 Brassica napus
A07p43940 Brassica napus
Aa31LG4G2300 Aethionema arabicum
Aa31LG5G15880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4760 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4761 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.499 Anthoceros agrestis
Actinidia17133 Actinidia chinensis
Actinidia35560 Actinidia chinensis
Ah.03g149240 Amaranthus hybridus
Ah.04g161120 Amaranthus hybridus
Ah.07g196370 Amaranthus hybridus
AL262U10020 Arabidopsis lyrata
AL2G39090 Arabidopsis lyrata
AL3G16110 Arabidopsis lyrata
Aqoxy5G00732 Aquilegia oxysepala
Aqoxy5G00934 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6ZX6SY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G5UQVY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NSA13U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TB2NW7 Arachis hypogaea
AT1G78690 Arabidopsis thaliana
AT3G05510 Arabidopsis thaliana
ATR0605G173 Amborella trichopoda
ATR0796G160 Amborella trichopoda
Atru.chr1.2735 Acer truncatum
Atru.chr12.1777 Acer truncatum
Atru.chr2.30 Acer truncatum
AUR62000763 Chenopodium quinoa
AUR62003323 Chenopodium quinoa
AUR62005206 Chenopodium quinoa
AUR62016259 Chenopodium quinoa
AUR62043754 Chenopodium quinoa
BcaB03g16027 Brassica carinata
BcaB04g19262 Brassica carinata
BcaB05g25152 Brassica carinata
BcaC03g15836 Brassica carinata
BcaC08g47462 Brassica carinata
BolC2t09600H Brassica oleracea
BolC3t16436H Brassica oleracea
BraA02t07237Z Brassica rapa
BraA03t12590Z Brassica rapa
BraA07t31901Z Brassica rapa
C02p35870 Brassica napus
C03p41550 Brassica napus
C06p52570 Brassica napus
CAN.G1459.11 Capsicum annuum
CAN.G883.6 Capsicum annuum
CANSAT54G0675 Cannabis sativa
CANSAT64G0003 Cannabis sativa
CANSAT78G0091 Cannabis sativa
CARHR072220 Cardamine hirsuta
CARHR079900 Cardamine hirsuta
Carub.0002s2555 Capsella rubella
Carub.0003s0480 Capsella rubella
Ca_05799_v3 Cicer arietinum L.
Ca_22443_v3 Cicer arietinum L.
Ca_22450_v3 Cicer arietinum L.
CBR_g19782 Chara braunii
CBR_g30126 Chara braunii
Cc02_g34140 Coffea canephora
Cc07_g12400 Coffea canephora
CDE01G0580 Ceratophyllum demersum
CDE02G1651 Ceratophyllum demersum
CDE12G0923 Ceratophyllum demersum
Cfa006629 Carpinus fangiana
Cfa024897 Carpinus fangiana
Ciclev10001108m.g Citrus clementina
Ciclev10021568m.g Citrus clementina
CiPaw.07G021400 Carya illinoinensis
CiPaw.07G213600 Carya illinoinensis
ClCG03G017130 Citrullus lanatus
ClCG10G000060 Citrullus lanatus
COL.COLO4_10519 Corchorus olitorius
COL.COLO4_22571 Corchorus olitorius
Cpa.g.sc119.5 Carica papaya
Cpa.g.sc119.6 Carica papaya
Cre03.g182650 Chlamydomonas reinhardtii
Cre11.g467850 Chlamydomonas reinhardtii
CsaV3_1G038830 Cucumis sativus L.
CsaV3_3G000060 Cucumis sativus L.
CsaV3_UNG147150 Cucumis sativus L.
CSS0001457 Camellia sinensis var. sinensis
CSS0017129 Camellia sinensis var. sinensis
CSS0017621 Camellia sinensis var. sinensis
DCAR_005376 Daucus carota
DCAR_016702 Daucus carota
DCAR_022146 Daucus carota
Dinv40338 Davidia involucrata
Duzib147G1416 Durio zibethinus
Duzib177G0088 Durio zibethinus
ECA240G4732 Erigeron canadensis
EL10Ac4g09915 Beta vulgaris
EL10Ac6g14726 Beta vulgaris
Eucgr.B01913 Eucalyptus grandis
Eucgr.I02174 Eucalyptus grandis
FAN09G4081 Fragaria x ananassa
FAN14G1300 Fragaria x ananassa
FAN23G0606 Fragaria x ananassa
FAN23G2263 Fragaria x ananassa
FAN26G3411 Fragaria x ananassa
FAN28G1247 Fragaria x ananassa
FvH4_1g09860 Fragaria vesca
FvH4_6g06570 Fragaria vesca
Glyma.03G235600 Glycine max
Glyma.09G195000 Glycine max
Glyma.16G110900 Glycine max
Glyma.19G233400 Glycine max
Gohir.A08G000048 Gossypium hirsutum
Gohir.A13G109400 Gossypium hirsutum
Gohir.D02G101400 Gossypium hirsutum
Gohir.D08G007800 Gossypium hirsutum
Gohir.D13G112100 Gossypium hirsutum
Gorai.004G001000 Gossypium raimondii
Gorai.005G114800 Gossypium raimondii
Gorai.013G125800 Gossypium raimondii
GSVIVG01004671001 Vitis vinifera
GSVIVG01030151001 Vitis vinifera
GSVIVG01030876001 Vitis vinifera
GSVIVG01031143001 Vitis vinifera
GSVIVG01032877001 Vitis vinifera
HanXRQChr09g0258991 Helianthus annuus
Haze_03290 Corylus avellana
Haze_04139 Corylus avellana
Hma1.2p1_0085F.1_g044160 Hydrangea macrophylla
Hma1.2p1_1292F.1_g273740 Hydrangea macrophylla
Hma1.2p1_1292F.1_g273750 Hydrangea macrophylla
HPP92_011845 Vanilla planifolia
HPP92_023795 Vanilla planifolia
Hund19672 Selenicereus undatus
Hund21711 Selenicereus undatus
Lalb_Chr09g0334461 Lupinus albus
Lalb_Chr15g0077341 Lupinus albus
Lalb_Chr18g0045771 Lupinus albus
Lj2C508G8 Lonicera japonica
Lj4g0005122 Lotus japonicus
Lj5A420G19 Lonicera japonica
Lsat_1_v5_gn_2_132801 Lactuca sativa
Lsat_1_v5_gn_9_124380 Lactuca sativa
Manes.01G158900 Manihot esculenta
Manes.08G117500 Manihot esculenta
Mapoly0002s0272 Marchantia polymorpha
Mapoly0006s0012 Marchantia polymorpha
MBI18_g46421_MAGBIO Magnolia biondii
MCO16G048 Micromonas commoda
MD02G1106200 Malus domestica
MD04G1200600 Malus domestica
MD12G1213100 Malus domestica
MD15G1226000 Malus domestica
MD17G1190100 Malus domestica
Medtr7g112680 Medicago truncatula
Medtr8g072400 Medicago truncatula
MELO3C013700.2 Cucumis melo
MELO3C015307.2 Cucumis melo
Migut.K01159 Erythranthe guttata
Migut.N02083 Erythranthe guttata
MSTRG.15608 Avicennia marina
MSTRG.27983 Avicennia marina
Nitab4.5_0000443g0200 Nicotiana tabacum
Nitab4.5_0000973g0050 Nicotiana tabacum
Nitab4.5_0003658g0050 Nicotiana tabacum
Nitab4.5_0003844g0040 Nicotiana tabacum
Nn4g25828 Nelumbo nucifera
Nn5g31082 Nelumbo nucifera
Oeu025037.1 Olea europaea
Oeu043345.1 Olea europaea
Oeu052611.1 Olea europaea
Os01g0931300 Oryza sativa ssp. japonica
Os04g0667000 Oryza sativa ssp. japonica
Peaxi162Scf00037g01215 Petunia axillaris
Peaxi162Scf00981g00020 Petunia axillaris
PGR083G0155 Punica granatum
PGR119G1364 Punica granatum
PGSC0003DMG400024711 Solanum tuberosum
PGSC0003DMG402009429 Solanum tuberosum
Phvul.003G279100 Phaseolus vulgaris
Phvul.006G089600 Phaseolus vulgaris
Potri.005G025400 Populus trichocarpa
Potri.011G146800 Populus trichocarpa
Pp3c12_540 Physcomitrium patens
Pp3c5_26280 Physcomitrium patens
PRCOL_00004374 Prasinoderma coloniale
Prupe.2G037700 Prunus persica
Prupe.6G320700 Prunus persica
Prupe.7G189000 Prunus persica
Psat0s27g0040 Pisum sativum
Psat0s3776g0080 Pisum sativum
Psat4g106840 Pisum sativum
PSO170G0896 Papaver somniferum
PSO832G3525 Papaver somniferum
QL03p020213 Quercus lobata
QL04p000929 Quercus lobata
RcHm_v2.0_Chr1g0322061 Rosa chinensis
RcHm_v2.0_Chr1g0322071 Rosa chinensis
RcHm_v2.0_Chr1g0322081 Rosa chinensis
RcHm_v2.0_Chr1g0322141 Rosa chinensis
RcHm_v2.0_Chr2g0096581 Rosa chinensis
RcHm_v2.0_Chr3g0455731 Rosa chinensis
RcHm_v2.0_Chr3g0455741 Rosa chinensis
Rhsim07G0188500 Rhododendron simsii
Rhsim08G0023700 Rhododendron simsii
Sabra05G0030900 Salix brachista
Sabra11G0131700 Salix brachista
SalBow5G4744 Salvia bowleyana
Sc03g0004220 Simmondsia chinensis
Sc09g0002950 Simmondsia chinensis
Sed0011741 Sechium edule
Sed0016733 Sechium edule
SEGI_38140 Sequoiadendron giganteum
SGA_v2.0_scaffold196G40951 Striga asiatica
SGA_v2.0_scaffold45G17091 Striga asiatica
SHI18105 Sapria himalayana
SMO203G0063 Selaginella moellendorffii
SMO356G0188 Selaginella moellendorffii
Solyc01g099710.4 Solanum lycopersicum
Solyc02g068360.4 Solanum lycopersicum
Sopen01g043230 Solanum pennellii
Sopen02g017490 Solanum pennellii
Sp3g04340 Schrenkiella parvula
Sp5g33750 Schrenkiella parvula
SpUn0074_0060 Schrenkiella parvula
TAR381G1552 Trochodendron aralioides
TAR633G1988 Trochodendron aralioides
THA.LOC104812307 Tarenaya hassleriana
THA.LOC104818717 Tarenaya hassleriana
Thecc.01G000300 Theobroma cacao
Thecc.03G117500 Theobroma cacao
Thecc.05G313000 Theobroma cacao
Thhalv10018972m.g Eutrema salsugineum
Thhalv10020802m.g Eutrema salsugineum
TPR.G14269 Trifolium pratense
TPR.G33230 Trifolium pratense
TWI36G1782 Tripterygium wilfordii
TWI75G1807 Tripterygium wilfordii
unitig_0.g2314 Utricularia gibba
unitig_0.g2636 Utricularia gibba
vmacro04814 Vaccinium macrocarpon
vmacro04815 Vaccinium macrocarpon
vmacro18484 Vaccinium macrocarpon
VMungo0251G1122 Vigna mungo
VMungo0540G0719 Vigna mungo
Zm00001eb148050 Zea mays
Zm00001eb363580 Zea mays
Zm00001eb433110 Zea mays

User provided reference genes

Program Settings