Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p15290 Brassica napus
A02p18230 Brassica napus
A06p19010 Brassica napus
A07p35130 Brassica napus
Aa31LG9G12360 Aethionema arabicum
Aa31sc12G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4460 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1913 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.238 Anthoceros agrestis
Actinidia17021 Actinidia chinensis
Ah.01g023310 Amaranthus hybridus
Ah.02g114630 Amaranthus hybridus
AL2G27650 Arabidopsis lyrata
AL6G39820 Arabidopsis lyrata
Aqoxy3G00440 Aquilegia oxysepala
Aqoxy6G01935 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.69EVEX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9X5JNZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C8TUAR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DU76ZX Arachis hypogaea
AT1G68730 Arabidopsis thaliana
AT5G27280 Arabidopsis thaliana
ATR0661G310 Amborella trichopoda
ATR0743G230 Amborella trichopoda
Atru.chr11.1427 Acer truncatum
Atru.chr13.208 Acer truncatum
Atru.chr13.209 Acer truncatum
AUR62010005 Chenopodium quinoa
AUR62012994 Chenopodium quinoa
BcaB03g15843 Brassica carinata
BcaB05g24406 Brassica carinata
BcaC03g14979 Brassica carinata
BcaC03g16466 Brassica carinata
BcaC04g21768 Brassica carinata
BcaC08g46324 Brassica carinata
BolC2t08593H Brassica oleracea
BolC2t10314H Brassica oleracea
BolC6t39311H Brassica oleracea
BraA02t06591Z Brassica rapa
BraA07t31106Z Brassica rapa
C02p25140 Brassica napus
C02p42780 Brassica napus
C03p59190 Brassica napus
C06p41140 Brassica napus
C09p27810 Brassica napus
CAN.G184.64 Capsicum annuum
CAN.G311.81 Capsicum annuum
CANSAT25G1892 Cannabis sativa
CANSAT25G2885 Cannabis sativa
CANSAT80G1162 Cannabis sativa
CARHR061550 Cardamine hirsuta
CARHR185890 Cardamine hirsuta
Carub.0002s1528 Capsella rubella
Carub.0006s2525 Capsella rubella
Ca_03293_v3 Cicer arietinum L.
Ca_26837_v3 Cicer arietinum L.
CBR_g44611 Chara braunii
CBR_g45372 Chara braunii
Cc10_g01070 Coffea canephora
Cc11_g10940 Coffea canephora
CDE05G2693 Ceratophyllum demersum
CDE05G2980 Ceratophyllum demersum
CDE10G0793 Ceratophyllum demersum
Cfa005295 Carpinus fangiana
Cfa008787 Carpinus fangiana
Ciclev10002475m.g Citrus clementina
Ciclev10032948m.g Citrus clementina
CiPaw.01G092300 Carya illinoinensis
CiPaw.05G085900 Carya illinoinensis
CiPaw.06G098700 Carya illinoinensis
CiPaw.08G069700 Carya illinoinensis
ClCG02G003880 Citrullus lanatus
ClCG05G023200 Citrullus lanatus
ClCG05G023210 Citrullus lanatus
COL.COLO4_26077 Corchorus olitorius
Cpa.g.sc1.243 Carica papaya
Cpa.g.sc26.255 Carica papaya
Cre17.g707950 Chlamydomonas reinhardtii
CsaV3_5G033810 Cucumis sativus L.
CsaV3_7G001250 Cucumis sativus L.
CSS0009204 Camellia sinensis var. sinensis
CSS0023064 Camellia sinensis var. sinensis
DCAR_013893 Daucus carota
Dinv27423 Davidia involucrata
Dinv31898 Davidia involucrata
Dinv39561 Davidia involucrata
Duzib093G1699 Durio zibethinus
Duzib116G0507 Durio zibethinus
Duzib251G0034 Durio zibethinus
ECA232G0330 Erigeron canadensis
ECA234G4437 Erigeron canadensis
EL10Ac6g14540 Beta vulgaris
EL10Ac9g21332 Beta vulgaris
Eucgr.F03705 Eucalyptus grandis
Eucgr.G02379 Eucalyptus grandis
Eucgr.I01459 Eucalyptus grandis
FAN07G1210 Fragaria x ananassa
FAN12G4176 Fragaria x ananassa
FAN15G0661 Fragaria x ananassa
FAN17G0290 Fragaria x ananassa
FAN22G0168 Fragaria x ananassa
FAN24G2039 Fragaria x ananassa
FAN27G0593 Fragaria x ananassa
FvH4_2g15740 Fragaria vesca
FvH4_4g28420 Fragaria vesca
Glyma.01G092100 Glycine max
Glyma.02G130100 Glycine max
Glyma.10G283900 Glycine max
Glyma.20G105800 Glycine max
Gohir.A01G108700 Gossypium hirsutum
Gohir.A12G173300 Gossypium hirsutum
Gohir.D01G095300 Gossypium hirsutum
Gohir.D12G175900 Gossypium hirsutum
Gorai.002G120700 Gossypium raimondii
Gorai.008G188300 Gossypium raimondii
GSVIVG01008732001 Vitis vinifera
GSVIVG01012002001 Vitis vinifera
HanXRQChr06g0184841 Helianthus annuus
HanXRQChr11g0322061 Helianthus annuus
HanXRQChr11g0322251 Helianthus annuus
HanXRQChr11g0335291 Helianthus annuus
HanXRQChr16g0527021 Helianthus annuus
Haze_02092 Corylus avellana
Haze_11800 Corylus avellana
Haze_22718 Corylus avellana
Hma1.2p1_0023F.1_g015820 Hydrangea macrophylla
Hma1.2p1_0189F.1_g082640 Hydrangea macrophylla
Hma1.2p1_2322F.1_g319860 Hydrangea macrophylla
Hma1.2p1_3012F.1_g331620 Hydrangea macrophylla
HPP92_000276 Vanilla planifolia
Hund06451 Selenicereus undatus
Hund25117 Selenicereus undatus
Lalb_Chr06g0163761 Lupinus albus
Lalb_Chr10g0099611 Lupinus albus
Lalb_Chr21g0306971 Lupinus albus
Lj2g0003137 Lotus japonicus
Lj4A802T110 Lonicera japonica
Lj5g0014599 Lotus japonicus
Lsat_1_v5_gn_2_6900 Lactuca sativa
Lsat_1_v5_gn_4_182240 Lactuca sativa
Lsat_1_v5_gn_4_20381 Lactuca sativa
Manes.05G141900 Manihot esculenta
Manes.14G095500 Manihot esculenta
Mapoly0005s0251 Marchantia polymorpha
Mapoly0030s0011 Marchantia polymorpha
MBI08_g05716_MAGBIO Magnolia biondii
MBI10_g18312_MAGBIO Magnolia biondii
MD05G1126400 Malus domestica
MD10G1129200 Malus domestica
MD13G1049900 Malus domestica
MD16G1050900 Malus domestica
Medtr1g112990 Medicago truncatula
Medtr4g045783 Medicago truncatula
MELO3C012198.2 Cucumis melo
MELO3C013330.2 Cucumis melo
Migut.C00905 Erythranthe guttata
Migut.E00281 Erythranthe guttata
Migut.N03189 Erythranthe guttata
Nitab4.5_0003030g0020 Nicotiana tabacum
Nitab4.5_0003073g0030 Nicotiana tabacum
Nitab4.5_0010558g0030 Nicotiana tabacum
Nn1g01623 Nelumbo nucifera
Nn3g17658 Nelumbo nucifera
Nn6g31897 Nelumbo nucifera
Oeu009916.1 Olea europaea
Oeu024121.3 Olea europaea
Oeu041361.1 Olea europaea
Oeu054548.1 Olea europaea
Os06g0724400 Oryza sativa ssp. japonica
Peaxi162Scf00174g01015 Petunia axillaris
Peaxi162Scf00198g00412 Petunia axillaris
PGR119G2405 Punica granatum
PGR142G1133 Punica granatum
PGSC0003DMG400009958 Solanum tuberosum
Phvul.003G024500 Phaseolus vulgaris
Phvul.007G017400 Phaseolus vulgaris
Potri.002G015900 Populus trichocarpa
Potri.005G246200 Populus trichocarpa
Potri.010G132400 Populus trichocarpa
Pp3c1_1710 Physcomitrium patens
Pp3c21_20550 Physcomitrium patens
Pp3c5_3740 Physcomitrium patens
PRCOL_00000340 Prasinoderma coloniale
Prupe.1G301800 Prunus persica
Prupe.8G169800 Prunus persica
Psat2g088920 Pisum sativum
Psat3g175920 Pisum sativum
Psat5g203600 Pisum sativum
Psat6g234560 Pisum sativum
PSO017G6227 Papaver somniferum
PSO384G5094 Papaver somniferum
PSO478G5115 Papaver somniferum
PSO541G5721 Papaver somniferum
PSO675G0007 Papaver somniferum
QL02p013021 Quercus lobata
QL03p044650 Quercus lobata
QL11p052502 Quercus lobata
RcHm_v2.0_Chr4g0436371 Rosa chinensis
RcHm_v2.0_Chr6g0279051 Rosa chinensis
Rhsim06G0011300 Rhododendron simsii
Sabra02G0012700 Salix brachista
Sabra05G0190300 Salix brachista
Sabra10G0101100 Salix brachista
SalBow6G2958 Salvia bowleyana
SalBow7G0593 Salvia bowleyana
SalBow8G2187 Salvia bowleyana
Sc18g0006230 Simmondsia chinensis
Sed0001204 Sechium edule
Sed0003034 Sechium edule
Sed0005065 Sechium edule
SEGI_27970 Sequoiadendron giganteum
SGA_v2.0_scaffold145G36105 Striga asiatica
SGA_v2.0_scaffold275G46539 Striga asiatica
SGA_v2.0_scaffold59G20634 Striga asiatica
SMO170G0032 Selaginella moellendorffii
Solyc04g082020.3 Solanum lycopersicum
Solyc05g010070.3 Solanum lycopersicum
Sopen04g035670 Solanum pennellii
Sopen05g005870 Solanum pennellii
Sp5g23840 Schrenkiella parvula
Sp7g08460 Schrenkiella parvula
TAR381G1567 Trochodendron aralioides
TAR622G0552 Trochodendron aralioides
TAR628G1706 Trochodendron aralioides
THA.LOC104801664 Tarenaya hassleriana
THA.LOC104813220 Tarenaya hassleriana
Thecc.02G364300 Theobroma cacao
Thecc.08G052500 Theobroma cacao
Thhalv10019239m.g Eutrema salsugineum
Thhalv10027929m.g Eutrema salsugineum
TPR.G2417 Trifolium pratense
TPR.G2677 Trifolium pratense
TWI56G0331 Tripterygium wilfordii
TWI75G1715 Tripterygium wilfordii
unitig_27.g25229 Utricularia gibba
unitig_744.g24605 Utricularia gibba
vmacro10504 Vaccinium macrocarpon
vmacro21847 Vaccinium macrocarpon
VMungo0720G1494 Vigna mungo
VMungo1215G0837 Vigna mungo
Zm00001eb161510 Zea mays
Zm00001eb228290 Zea mays
Zm00001eb240610 Zea mays
Zm00001eb272170 Zea mays
Zm00001eb342600 Zea mays

User provided reference genes

Program Settings