Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p13890 Brassica napus
A09p18930 Brassica napus
Aa31LG2G11340 Aethionema arabicum
Aa31LG7G7460 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3516 Anthoceros agrestis
Actinidia01667 Actinidia chinensis
Actinidia02685 Actinidia chinensis
Actinidia13499 Actinidia chinensis
Actinidia16888 Actinidia chinensis
Ah.10g027150 Amaranthus hybridus
AL1G37230 Arabidopsis lyrata
AL1G66660 Arabidopsis lyrata
Aqoxy5G02748 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6D9H3Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G3RLSH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I5SZZH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L0WD4R Arachis hypogaea
AT1G23440 Arabidopsis thaliana
AT1G56700 Arabidopsis thaliana
ATR0693G360 Amborella trichopoda
Atru.chr11.2057 Acer truncatum
Atru.chr12.1608 Acer truncatum
Atru.chr12.1614 Acer truncatum
AUR62000442 Chenopodium quinoa
AUR62005406 Chenopodium quinoa
AUR62006789 Chenopodium quinoa
AUR62014066 Chenopodium quinoa
BcaB03g11940 Brassica carinata
BcaB03g14149 Brassica carinata
BcaB07g31138 Brassica carinata
BcaB07g32340 Brassica carinata
BcaC04g22077 Brassica carinata
BcaC05g26262 Brassica carinata
BcaC06g35037 Brassica carinata
BcaC07g39199 Brassica carinata
BolC5t30971H Brassica oleracea
BolC7t42565H Brassica oleracea
BolC8t49829H Brassica oleracea
BolC9t55300H Brassica oleracea
BraA07t29142Z Brassica rapa
BraA09t37513Z Brassica rapa
BraA09t39615Z Brassica rapa
C05p22740 Brassica napus
C07p20440 Brassica napus
C09p23760 Brassica napus
CAN.G124.15 Capsicum annuum
CAN.G1374.5 Capsicum annuum
CAN.G1374.6 Capsicum annuum
CAN.G446.7 Capsicum annuum
CANSAT54G1181 Cannabis sativa
CARHR023870 Cardamine hirsuta
CARHR054810 Cardamine hirsuta
Carub.0001s2301 Capsella rubella
Carub.0002s0719 Capsella rubella
Ca_10189_v3 Cicer arietinum L.
Ca_22677_v3 Cicer arietinum L.
CBR_g37642 Chara braunii
Cc02_g35480 Coffea canephora
Cc11_g15310 Coffea canephora
CDE06G0817 Ceratophyllum demersum
CDE06G1091 Ceratophyllum demersum
CDE07G1530 Ceratophyllum demersum
Cfa006736 Carpinus fangiana
Cfa009171 Carpinus fangiana
Ciclev10012715m.g Citrus clementina
Ciclev10032716m.g Citrus clementina
CiPaw.06G070600 Carya illinoinensis
CiPaw.07G033800 Carya illinoinensis
CiPaw.08G152700 Carya illinoinensis
ClCG03G017790 Citrullus lanatus
ClCG05G025440 Citrullus lanatus
COL.COLO4_05494 Corchorus olitorius
COL.COLO4_24199 Corchorus olitorius
Cpa.g.sc48.206 Carica papaya
Cre14.g623439 Chlamydomonas reinhardtii
CsaV3_1G037960 Cucumis sativus L.
CsaV3_5G031460 Cucumis sativus L.
CSS0027833 Camellia sinensis var. sinensis
CSS0034100 Camellia sinensis var. sinensis
DCAR_005273 Daucus carota
DCAR_007078 Daucus carota
DCAR_025294 Daucus carota
Dinv15275 Davidia involucrata
Dinv24492 Davidia involucrata
Dinv30927 Davidia involucrata
Duzib106G1726 Durio zibethinus
Duzib177G0914 Durio zibethinus
Duzib268G1542 Durio zibethinus
ECA234G3083 Erigeron canadensis
ECA240G2269 Erigeron canadensis
EL10Ac4g09521 Beta vulgaris
Eucgr.H01307 Eucalyptus grandis
Eucgr.H02553 Eucalyptus grandis
Eucgr.H02554 Eucalyptus grandis
FAN02G2820 Fragaria x ananassa
FAN05G5728 Fragaria x ananassa
FAN07G2967 Fragaria x ananassa
FAN09G1256 Fragaria x ananassa
FAN12G3634 Fragaria x ananassa
FAN14G1429 Fragaria x ananassa
FAN17G1444 Fragaria x ananassa
FAN22G1092 Fragaria x ananassa
FvH4_4g32860 Fragaria vesca
FvH4_6g08120 Fragaria vesca
Glyma.03G229300 Glycine max
Glyma.10G144800 Glycine max
Glyma.18G140300 Glycine max
Glyma.19G226600 Glycine max
Glyma.20G093900 Glycine max
Gohir.A03G138100 Gossypium hirsutum
Gohir.A13G177200 Gossypium hirsutum
Gohir.D02G161100 Gossypium hirsutum
Gohir.D13G183700 Gossypium hirsutum
Gorai.005G181200 Gossypium raimondii
Gorai.013G209000 Gossypium raimondii
GSVIVG01013773001 Vitis vinifera
GSVIVG01031297001 Vitis vinifera
HanXRQChr09g0247261 Helianthus annuus
HanXRQChr17g0569861 Helianthus annuus
Haze_04022 Corylus avellana
Haze_12206 Corylus avellana
Hma1.2p1_0052F.1_g030530 Hydrangea macrophylla
Hma1.2p1_0223F.1_g094400 Hydrangea macrophylla
Hma1.2p1_1553F.1_g290270 Hydrangea macrophylla
HPP92_013506 Vanilla planifolia
HPP92_017293 Vanilla planifolia
Hund06005 Selenicereus undatus
Hund07291 Selenicereus undatus
Hund21847 Selenicereus undatus
Lalb_Chr02g0147661 Lupinus albus
Lalb_Chr06g0167381 Lupinus albus
Lalb_Chr16g0392311 Lupinus albus
Lalb_Chr21g0310131 Lupinus albus
Lj5A322T71 Lonicera japonica
Lj5g0000397 Lotus japonicus
Lju99C9G3 Lonicera japonica
Lsat_1_v5_gn_4_5421 Lactuca sativa
Lsat_1_v5_gn_7_66520 Lactuca sativa
Manes.08G108900 Manihot esculenta
Manes.09G179800 Manihot esculenta
Manes.13G028400 Manihot esculenta
Mapoly0015s0188 Marchantia polymorpha
MBI16_g27078_MAGBIO Magnolia biondii
MBI18_g09663_MAGBIO Magnolia biondii
MBI18_g25675_MAGBIO Magnolia biondii
MBI19_g32701_MAGBIO Magnolia biondii
MD04G1189700 Malus domestica
MD12G1202400 Malus domestica
MD13G1094400 Malus domestica
Medtr1g084740 Medicago truncatula
Medtr8g065050 Medicago truncatula
MELO3C011984.2 Cucumis melo
MELO3C015249.2 Cucumis melo
Migut.B00850 Erythranthe guttata
Migut.E00176 Erythranthe guttata
Migut.N00960 Erythranthe guttata
MSTRG.13363 Avicennia marina
MSTRG.27917 Avicennia marina
MSTRG.5158 Avicennia marina
Nitab4.5_0001366g0030 Nicotiana tabacum
Nitab4.5_0001366g0040 Nicotiana tabacum
Nitab4.5_0002783g0130 Nicotiana tabacum
Nitab4.5_0004066g0090 Nicotiana tabacum
Nitab4.5_0005710g0060 Nicotiana tabacum
Nn4g22734 Nelumbo nucifera
Nn4g22736 Nelumbo nucifera
Oeu013200.1 Olea europaea
Oeu041031.1 Olea europaea
Oeu060663.1 Olea europaea
Oeu061928.1 Olea europaea
Os03g0367900 Oryza sativa ssp. japonica
Os07g0639600 Oryza sativa ssp. japonica
Os09g0396300 Oryza sativa ssp. japonica
Peaxi162Scf00357g00520 Petunia axillaris
Peaxi162Scf00710g00522 Petunia axillaris
PGR031G3798 Punica granatum
PGR119G0496 Punica granatum
PGSC0003DMG400002786 Solanum tuberosum
PGSC0003DMG400013484 Solanum tuberosum
Phvul.001G223200 Phaseolus vulgaris
Phvul.007G203800 Phaseolus vulgaris
Potri.005G005800 Populus trichocarpa
Potri.013G005100 Populus trichocarpa
Pp3c24_5900 Physcomitrium patens
Pp3c8_5850 Physcomitrium patens
Prupe.1G251000 Prunus persica
Prupe.6G307500 Prunus persica
Psat0s3758g0040 Pisum sativum
Psat6g155240 Pisum sativum
PSO017G0624 Papaver somniferum
PSO063G6120 Papaver somniferum
PSO170G1691 Papaver somniferum
PSO210G2149 Papaver somniferum
PSO357G0292 Papaver somniferum
PSO478G1263 Papaver somniferum
PSO761G0291 Papaver somniferum
PSO832G0392 Papaver somniferum
QL03p008823 Quercus lobata
QL03p012966 Quercus lobata
QL03p013013 Quercus lobata
QL03p059609 Quercus lobata
RcHm_v2.0_Chr3g0457971 Rosa chinensis
RcHm_v2.0_Chr4g0441871 Rosa chinensis
Rhsim11G0099400 Rhododendron simsii
Sabra05G0002000 Salix brachista
Sabra05G0016100 Salix brachista
Sabra13G0004100 Salix brachista
SalBow7G0311 Salvia bowleyana
Sc14g0008660 Simmondsia chinensis
Sc16g0009270 Simmondsia chinensis
Sed0002309 Sechium edule
Sed0012068 Sechium edule
Sed0023578 Sechium edule
SEGI_28734 Sequoiadendron giganteum
SGA_v2.0_scaffold438G51637 Striga asiatica
SGA_v2.0_scaffold4G01990 Striga asiatica
SMO340G0069 Selaginella moellendorffii
Solyc01g100970.3 Solanum lycopersicum
Solyc05g005200.3 Solanum lycopersicum
Sopen01g044430 Solanum pennellii
Sopen05g001210 Solanum pennellii
Sp1g20870 Schrenkiella parvula
Sp2g06010 Schrenkiella parvula
TAR362G0406 Trochodendron aralioides
TAR371G0044 Trochodendron aralioides
TAR633G0650 Trochodendron aralioides
THA.LOC104816848 Tarenaya hassleriana
THA.LOC104822972 Tarenaya hassleriana
Thecc.02G253400 Theobroma cacao
Thecc.05G327200 Theobroma cacao
Thhalv10008744m.g Eutrema salsugineum
Thhalv10023683m.g Eutrema salsugineum
TPR.G2585 Trifolium pratense
TPR.G9523 Trifolium pratense
TWI12G0013 Tripterygium wilfordii
TWI18G0457 Tripterygium wilfordii
TWI36G1342 Tripterygium wilfordii
TWI56G0661 Tripterygium wilfordii
unitig_699.g19661 Utricularia gibba
unitig_736.g22777 Utricularia gibba
vmacro01593 Vaccinium macrocarpon
VMungo0720G0581 Vigna mungo
VMungo1383G3306 Vigna mungo
Zm00001eb017920 Zea mays
Zm00001eb328970 Zea mays
Zm00001eb394200 Zea mays

User provided reference genes

Program Settings