Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p06230 Brassica napus
Aa31LG2G17890 Aethionema arabicum
Aa31LG2G17900 Aethionema arabicum
Aa31LG2G17910 Aethionema arabicum
Aa31LG2G17920 Aethionema arabicum
Aa31LG2G17970 Aethionema arabicum
Aa31LG2G17980 Aethionema arabicum
Aa31LG2G17990 Aethionema arabicum
Aa31LG2G18000 Aethionema arabicum
Aa31LG2G18010 Aethionema arabicum
Aa31LG2G18020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2377 Anthoceros agrestis
Actinidia04230 Actinidia chinensis
Actinidia04233 Actinidia chinensis
Actinidia13957 Actinidia chinensis
Actinidia14097 Actinidia chinensis
Actinidia28197 Actinidia chinensis
Actinidia28198 Actinidia chinensis
Ah.09g224040 Amaranthus hybridus
Ah.09g224050 Amaranthus hybridus
AL7G19830 Arabidopsis lyrata
Aqoxy7G03588 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1CW7CI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D446QM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FIJ3VG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M80J93 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MIVF0X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TXDQ7E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UI7C31 Arachis hypogaea
AT4G32060 Arabidopsis thaliana
ATR0767G241 Amborella trichopoda
Atru.chr7.2483 Acer truncatum
Atru.chr7.297 Acer truncatum
AUR62011233 Chenopodium quinoa
AUR62012436 Chenopodium quinoa
AUR62020000 Chenopodium quinoa
AUR62031560 Chenopodium quinoa
BcaC09g51995 Brassica carinata
BcaC09g51996 Brassica carinata
BcaNung03135 Brassica carinata
BolC1t00684H Brassica oleracea
BraA01t00590Z Brassica rapa
C01p06870 Brassica napus
CAN.G187.9 Capsicum annuum
CANSAT11G1075 Cannabis sativa
CANSAT25G0276 Cannabis sativa
CARHR239960 Cardamine hirsuta
CARHR239970 Cardamine hirsuta
Carub.0007s0849 Capsella rubella
Ca_13038_v3 Cicer arietinum L.
Ca_21634_v3 Cicer arietinum L.
Ca_30356_v3 Cicer arietinum L.
CBR_g4372 Chara braunii
Cc06_g07610 Coffea canephora
Cc08_g00320 Coffea canephora
CDE04G1762 Ceratophyllum demersum
Ciclev10008054m.g Citrus clementina
Ciclev10010671m.g Citrus clementina
CiPaw.07G226100 Carya illinoinensis
ClCG02G017150 Citrullus lanatus
ClCG05G016640 Citrullus lanatus
COL.COLO4_18899 Corchorus olitorius
COL.COLO4_18900 Corchorus olitorius
COL.COLO4_24156 Corchorus olitorius
Cpa.g.sc187.14 Carica papaya
Cre12.g499350 Chlamydomonas reinhardtii
CsaV3_2G003630 Cucumis sativus L.
CsaV3_4G036940 Cucumis sativus L.
CSS0000464 Camellia sinensis var. sinensis
CSS0000988 Camellia sinensis var. sinensis
CSS0002998 Camellia sinensis var. sinensis
CSS0003653 Camellia sinensis var. sinensis
CSS0009866 Camellia sinensis var. sinensis
CSS0021378 Camellia sinensis var. sinensis
CSS0024503 Camellia sinensis var. sinensis
CSS0034536 Camellia sinensis var. sinensis
CSS0039529 Camellia sinensis var. sinensis
DCAR_003108 Daucus carota
DCAR_009346 Daucus carota
Dinv18187 Davidia involucrata
Dinv42930 Davidia involucrata
Dinv43170 Davidia involucrata
Duzib168G1641 Durio zibethinus
Duzib187G0671 Durio zibethinus
ECA240G0662 Erigeron canadensis
ECA246G0827 Erigeron canadensis
EL10Ac2g04165 Beta vulgaris
EL10Ac8g18797 Beta vulgaris
Eucgr.C00479 Eucalyptus grandis
Eucgr.C02735 Eucalyptus grandis
FAN15G0738 Fragaria x ananassa
FAN19G3014 Fragaria x ananassa
FAN20G0528 Fragaria x ananassa
FAN23G2248 Fragaria x ananassa
FAN24G3314 Fragaria x ananassa
FAN26G0373 Fragaria x ananassa
FAN27G1900 Fragaria x ananassa
FAN28G1298 Fragaria x ananassa
FvH4_2g28590 Fragaria vesca
Glyma.04G064800 Glycine max
Glyma.06G066000 Glycine max
Glyma.13G163900 Glycine max
Glyma.14G113600 Glycine max
Glyma.17G107000 Glycine max
Glyma.17G213600 Glycine max
Gohir.A06G099600 Gossypium hirsutum
Gohir.A08G091200 Gossypium hirsutum
Gohir.A13G180800 Gossypium hirsutum
Gohir.D03G045650 Gossypium hirsutum
Gohir.D06G101800 Gossypium hirsutum
Gohir.D08G101700 Gossypium hirsutum
Gohir.D13G188600 Gossypium hirsutum
Gorai.003G046800 Gossypium raimondii
Gorai.004G109700 Gossypium raimondii
Gorai.010G116800 Gossypium raimondii
Gorai.013G214000 Gossypium raimondii
GSVIVG01012862001 Vitis vinifera
GSVIVG01035935001 Vitis vinifera
GSVIVG01035936001 Vitis vinifera
HanXRQChr03g0063321 Helianthus annuus
HanXRQChr16g0511421 Helianthus annuus
Haze_21479 Corylus avellana
Hma1.2p1_0974F.1_g243060 Hydrangea macrophylla
HPP92_010854 Vanilla planifolia
HPP92_016993 Vanilla planifolia
HPP92_017009 Vanilla planifolia
HPP92_021998 Vanilla planifolia
HPP92_022041 Vanilla planifolia
Hund04439 Selenicereus undatus
Lalb_Chr07g0179391 Lupinus albus
Lalb_Chr11g0063631 Lupinus albus
Lj3g0023967 Lotus japonicus
Lj4g0012706 Lotus japonicus
Lj5g0013044 Lotus japonicus
Lj7A439T21 Lonicera japonica
Lj8A726T45 Lonicera japonica
Lj8A727G16 Lonicera japonica
Lj8A728G13 Lonicera japonica
Lsat_1_v5_gn_6_115600 Lactuca sativa
Lsat_1_v5_gn_7_46821 Lactuca sativa
Manes.14G121300 Manihot esculenta
Manes.16G125200 Manihot esculenta
MBI14_g41054_MAGBIO Magnolia biondii
MBI15_g25753_MAGBIO Magnolia biondii
MCO01G446 Micromonas commoda
MD02G1018100 Malus domestica
MD08G1152800 Malus domestica
MD15G1129400 Malus domestica
MD15G1162000 Malus domestica
Medtr1g012850 Medicago truncatula
Medtr3g106550 Medicago truncatula
Medtr4g116190 Medicago truncatula
MELO3C004433.2 Cucumis melo
MELO3C016993.2 Cucumis melo
Migut.A00014 Erythranthe guttata
Migut.J01231 Erythranthe guttata
MSTRG.26023 Avicennia marina
MSTRG.6083 Avicennia marina
Nitab4.5_0000206g0160 Nicotiana tabacum
Nitab4.5_0000478g0010 Nicotiana tabacum
Nitab4.5_0002134g0010 Nicotiana tabacum
Nitab4.5_0005543g0010 Nicotiana tabacum
Nn1g09077 Nelumbo nucifera
Nn2g12201 Nelumbo nucifera
Nn8g39662 Nelumbo nucifera
Oeu058587.1 Olea europaea
Oeu063503.1 Olea europaea
Os02g0613000 Oryza sativa ssp. japonica
Os04g0502900 Oryza sativa ssp. japonica
Peaxi162Scf00113g00047 Petunia axillaris
Peaxi162Scf00341g00819 Petunia axillaris
PGR044G1422 Punica granatum
PGR142G3874 Punica granatum
Phvul.001G049500 Phaseolus vulgaris
Phvul.003G172800 Phaseolus vulgaris
Phvul.009G091000 Phaseolus vulgaris
Potri.018G023400 Populus trichocarpa
Potri.018G118008 Populus trichocarpa
Potri.018G118089 Populus trichocarpa
Potri.018G118116 Populus trichocarpa
Pp3c10_7560 Physcomitrium patens
Pp3c2_7480 Physcomitrium patens
PRCOL_00002726 Prasinoderma coloniale
PRCOL_00005637 Prasinoderma coloniale
Prupe.1G485000 Prunus persica
Prupe.7G257300 Prunus persica
Psat4g034360 Pisum sativum
Psat5g031560 Pisum sativum
PSO210G2755 Papaver somniferum
PSO210G7320 Papaver somniferum
QL02p020845 Quercus lobata
QL02p090852 Quercus lobata
RcHm_v2.0_Chr2g0087011 Rosa chinensis
RcHm_v2.0_Chr6g0297361 Rosa chinensis
RcHm_v2.0_Chr7g0219711 Rosa chinensis
Rhsim01G0024200 Rhododendron simsii
Rhsim01G0050500 Rhododendron simsii
Rhsim01G0050600 Rhododendron simsii
Rhsim07G0160900 Rhododendron simsii
Rhsim07G0161200 Rhododendron simsii
Sabra18G0025800 Salix brachista
Sabra18G0098800 Salix brachista
Sabra18G0099300 Salix brachista
Sabra18G0100800 Salix brachista
Sabra18G0101300 Salix brachista
Sc06g0000500 Simmondsia chinensis
Sc08g0005920 Simmondsia chinensis
Sed0015380 Sechium edule
Sed0026954 Sechium edule
SEGI_12702 Sequoiadendron giganteum
SEGI_36225 Sequoiadendron giganteum
SEGI_40808 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09087 Striga asiatica
SGA_v2.0_scaffold229G43328 Striga asiatica
SMO115G0112 Selaginella moellendorffii
Solyc02g014560.3 Solanum lycopersicum
Solyc06g018050.4 Solanum lycopersicum
Sopen02g003950 Solanum pennellii
Sopen06g008500 Solanum pennellii
Sp7g29860 Schrenkiella parvula
TAR170G0005 Trochodendron aralioides
TAR625G1156 Trochodendron aralioides
TAR636G2918 Trochodendron aralioides
THA.LOC104803848 Tarenaya hassleriana
THA.LOC104804503 Tarenaya hassleriana
Thecc.09G020500 Theobroma cacao
Thecc.09G138200 Theobroma cacao
Thhalv10024993m.g Eutrema salsugineum
TPR.G14033 Trifolium pratense
TPR.G28515 Trifolium pratense
TPR.G3100 Trifolium pratense
TPR.G38931 Trifolium pratense
TWI34G0888 Tripterygium wilfordii
TWI63G0067 Tripterygium wilfordii
TWI63G1529 Tripterygium wilfordii
unitig_37.g12718 Utricularia gibba
vmacro05160 Vaccinium macrocarpon
vmacro07756 Vaccinium macrocarpon
VMungo0647G0219 Vigna mungo
VMungo1215G2260 Vigna mungo
VMungo1309G0280 Vigna mungo
Zm00001eb046070 Zea mays
Zm00001eb078110 Zea mays
Zm00001eb184570 Zea mays
Zm00001eb247020 Zea mays
Zm00001eb426050 Zea mays

User provided reference genes

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