Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p44800 Brassica napus
A07p06340 Brassica napus
Aa31LG2G8580 Aethionema arabicum
Aa31sc481G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1845 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.448 Anthoceros agrestis
Actinidia16285 Actinidia chinensis
Actinidia17267 Actinidia chinensis
Actinidia38578 Actinidia chinensis
Ah.04g161690 Amaranthus hybridus
Ah.06g193200 Amaranthus hybridus
Ah.06g193240 Amaranthus hybridus
AL3G43550 Arabidopsis lyrata
Aqoxy148s002 Aquilegia oxysepala
Aqoxy1G00035 Aquilegia oxysepala
Aqoxy2G00081 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.KJ0WPF Arachis hypogaea
AT2G05990 Arabidopsis thaliana
ATR0605G061 Amborella trichopoda
Atru.chr3.2424 Acer truncatum
Atru.chr8.1094 Acer truncatum
AUR62025900 Chenopodium quinoa
AUR62029656 Chenopodium quinoa
AUR62041929 Chenopodium quinoa
BcaB06g26872 Brassica carinata
BcaB08g34517 Brassica carinata
BcaC01g03141 Brassica carinata
BcaC06g35947 Brassica carinata
BolC3t17842H Brassica oleracea
BolC7t41367H Brassica oleracea
BraA03t13615Z Brassica rapa
BraA07t28427Z Brassica rapa
C03p55650 Brassica napus
C07p09430 Brassica napus
CAN.G1161.27 Capsicum annuum
CAN.G362.26 Capsicum annuum
CAN.G362.29 Capsicum annuum
CAN.G649.2 Capsicum annuum
CAN.G649.7 Capsicum annuum
CANSAT54G1890 Cannabis sativa
CANSAT64G1550 Cannabis sativa
CARHR103610 Cardamine hirsuta
CARHR218240 Cardamine hirsuta
Carub.0003s2710 Capsella rubella
Ca_19027_v3 Cicer arietinum L.
Ca_22309_v3 Cicer arietinum L.
CBR_g50287 Chara braunii
Cc01_g05340 Coffea canephora
Cc06_g16000 Coffea canephora
CDE10G0871 Ceratophyllum demersum
CDE10G1276 Ceratophyllum demersum
Cfa009656 Carpinus fangiana
Cfa020176 Carpinus fangiana
Ciclev10013442m.g Citrus clementina
Ciclev10015082m.g Citrus clementina
CiPaw.13G169600 Carya illinoinensis
CiPaw.14G129000 Carya illinoinensis
ClCG02G023660 Citrullus lanatus
ClCG03G013700 Citrullus lanatus
COL.COLO4_05354 Corchorus olitorius
COL.COLO4_10397 Corchorus olitorius
COL.COLO4_10398 Corchorus olitorius
Cpa.g.c30861 Carica papaya
Cpa.g.sc85.73 Carica papaya
Cre06.g294950 Chlamydomonas reinhardtii
CsaV3_1G042350 Cucumis sativus L.
CsaV3_4G023750 Cucumis sativus L.
CSS0005989 Camellia sinensis var. sinensis
CSS0044108 Camellia sinensis var. sinensis
DCAR_001963 Daucus carota
DCAR_019844 Daucus carota
Dinv08064 Davidia involucrata
Dinv10638 Davidia involucrata
Dinv14290 Davidia involucrata
Dinv24078 Davidia involucrata
Dinv36317 Davidia involucrata
Duzib093G0649 Durio zibethinus
Duzib150G0505 Durio zibethinus
ECA233G3998 Erigeron canadensis
ECA234G1987 Erigeron canadensis
ECA234G3450 Erigeron canadensis
ECA236G4945 Erigeron canadensis
EL10Ac4g10327 Beta vulgaris
Eucgr.A02448 Eucalyptus grandis
Eucgr.B02592 Eucalyptus grandis
FAN02G2617 Fragaria x ananassa
FAN05G0585 Fragaria x ananassa
FAN11G0926 Fragaria x ananassa
FAN14G4389 Fragaria x ananassa
FAN16G1499 Fragaria x ananassa
FAN21G0718 Fragaria x ananassa
FAN25G2118 Fragaria x ananassa
FvH4_3g44170 Fragaria vesca
FvH4_6g22440 Fragaria vesca
Glyma.08G345900 Glycine max
Glyma.11G101400 Glycine max
Glyma.12G027300 Glycine max
Glyma.18G156100 Glycine max
Gohir.A04G058000 Gossypium hirsutum
Gohir.A08G012700 Gossypium hirsutum
Gohir.A13G214700 Gossypium hirsutum
Gohir.D04G083232 Gossypium hirsutum
Gohir.D08G023100 Gossypium hirsutum
Gohir.D13G218400 Gossypium hirsutum
Gorai.004G018400 Gossypium raimondii
Gorai.006G067500 Gossypium raimondii
Gorai.013G249200 Gossypium raimondii
GSVIVG01025358001 Vitis vinifera
GSVIVG01033509001 Vitis vinifera
HanXRQChr02g0056711 Helianthus annuus
HanXRQChr16g0525281 Helianthus annuus
HanXRQChr17g0564011 Helianthus annuus
Haze_19979 Corylus avellana
Haze_23020 Corylus avellana
Hma1.2p1_0386F.1_g141810 Hydrangea macrophylla
Hma1.2p1_1169F.1_g263220 Hydrangea macrophylla
HPP92_019676 Vanilla planifolia
Hund21656 Selenicereus undatus
Lalb_Chr03g0024781 Lupinus albus
Lalb_Chr03g0041281 Lupinus albus
Lalb_Chr19g0139391 Lupinus albus
Lj1g0002452 Lotus japonicus
Lj2A1208G27 Lonicera japonica
Lj2A367T23 Lonicera japonica
Lj2A671T17 Lonicera japonica
Lj3g0004191 Lotus japonicus
Lj6A647T19 Lonicera japonica
Lju124A26G37 Lonicera japonica
Lsat_1_v5_gn_1_116480 Lactuca sativa
Lsat_1_v5_gn_6_49841 Lactuca sativa
Manes.08G046300 Manihot esculenta
Manes.15G102700 Manihot esculenta
Mapoly0037s0052 Marchantia polymorpha
MBI01_g01350_MAGBIO Magnolia biondii
MBI03_g20386_MAGBIO Magnolia biondii
MBI05_g28273_MAGBIO Magnolia biondii
MBI05_g45122_MAGBIO Magnolia biondii
MBI08_g15145_MAGBIO Magnolia biondii
MBI12_g16195_MAGBIO Magnolia biondii
MBI18_g17201_MAGBIO Magnolia biondii
MBI18_g39949_MAGBIO Magnolia biondii
MCO16G123 Micromonas commoda
MD03G1016800 Malus domestica
MD11G1017400 Malus domestica
MD12G1059400 Malus domestica
MD12G1059500 Malus domestica
MD14G1058600 Malus domestica
MD14G1058700 Malus domestica
Medtr2g066850 Medicago truncatula
Medtr4g074950 Medicago truncatula
Medtr7g037650 Medicago truncatula
Medtr7g053290 Medicago truncatula
MELO3C014644.2 Cucumis melo
MELO3C015668.2 Cucumis melo
Migut.D00546 Erythranthe guttata
Migut.K00038 Erythranthe guttata
MSTRG.10841 Avicennia marina
MSTRG.19902 Avicennia marina
Nitab4.5_0000105g0060 Nicotiana tabacum
Nitab4.5_0001146g0160 Nicotiana tabacum
Nitab4.5_0001538g0040 Nicotiana tabacum
Nitab4.5_0002689g0040 Nicotiana tabacum
Nitab4.5_0007607g0010 Nicotiana tabacum
Nitab4.5_0016973g0010 Nicotiana tabacum
Nn2g15657 Nelumbo nucifera
Oeu007768.1 Olea europaea
Oeu024460.1 Olea europaea
Oeu064292.1 Olea europaea
Os08g0327400 Oryza sativa ssp. japonica
Os09g0277800 Oryza sativa ssp. japonica
Peaxi162Scf00003g04334 Petunia axillaris
Peaxi162Scf00202g00313 Petunia axillaris
Peaxi162Scf00258g00430 Petunia axillaris
Peaxi162Scf00403g00113 Petunia axillaris
PGR004G0507 Punica granatum
PGR119G0948 Punica granatum
PGSC0003DMG400011436 Solanum tuberosum
PGSC0003DMG400032152 Solanum tuberosum
Phvul.008G134300 Phaseolus vulgaris
Phvul.011G030400 Phaseolus vulgaris
Potri.001G013500 Populus trichocarpa
Potri.003G212700 Populus trichocarpa
Potri.016G046701 Populus trichocarpa
Potri.T014016 Populus trichocarpa
Pp3c15_11360 Physcomitrium patens
Pp3c9_11740 Physcomitrium patens
Pp3s70_130 Physcomitrium patens
PRCOL_00004372 Prasinoderma coloniale
Prupe.6G015200 Prunus persica
Prupe.7G076200 Prunus persica
Psat0s4200g0080 Pisum sativum
Psat3g074760 Pisum sativum
Psat3g150560 Pisum sativum
Psat5g159680 Pisum sativum
Psat6g107960 Pisum sativum
Psat7g142800 Pisum sativum
Psat7g177080 Pisum sativum
PSO017G3467 Papaver somniferum
PSO063G5731 Papaver somniferum
PSO229G0099 Papaver somniferum
PSO675G2467 Papaver somniferum
QL01p009166 Quercus lobata
QL01p009620 Quercus lobata
QL07p023595 Quercus lobata
RcHm_v2.0_Chr3g0479801 Rosa chinensis
RcHm_v2.0_Chr5g0080511 Rosa chinensis
Rhsim04G0097100 Rhododendron simsii
Rhsim13G0226500 Rhododendron simsii
RhsimUnG0212900 Rhododendron simsii
Sabra01G0009900 Salix brachista
Sabra16G0050600 Salix brachista
SalBow1G4656 Salvia bowleyana
SalBow1G6196 Salvia bowleyana
Sc16g0011940 Simmondsia chinensis
Sed0025168 Sechium edule
SEGI_22344 Sequoiadendron giganteum
SEGI_31993 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00770 Striga asiatica
SGA_v2.0_scaffold274G46480 Striga asiatica
SGA_v2.0_scaffold94G28420 Striga asiatica
SMO147G0279 Selaginella moellendorffii
Solyc01g006450.4 Solanum lycopersicum
Solyc10g078740.2 Solanum lycopersicum
Sopen01g002440 Solanum pennellii
Sopen10g029360 Solanum pennellii
Sp3g24490 Schrenkiella parvula
TAR623G0222 Trochodendron aralioides
TAR633G2379 Trochodendron aralioides
THA.LOC104815336 Tarenaya hassleriana
THA.LOC104826592 Tarenaya hassleriana
Thecc.05G170600 Theobroma cacao
Thecc.09G218800 Theobroma cacao
Thhalv10002561m.g Eutrema salsugineum
TPR.G26851 Trifolium pratense
TPR.G32344 Trifolium pratense
TWI32G0758 Tripterygium wilfordii
TWI34G1736 Tripterygium wilfordii
unitig_22.g5310 Utricularia gibba
unitig_26.g9066 Utricularia gibba
vmacro04160 Vaccinium macrocarpon
vmacro09114 Vaccinium macrocarpon
VMungo1127G0151 Vigna mungo
VMungo1383G3361 Vigna mungo
Zm00001eb026260 Zea mays
Zm00001eb028240 Zea mays
Zm00001eb176310 Zea mays
Zm00001eb308620 Zea mays

User provided reference genes

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