Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p18270 Brassica napus
A06p01030 Brassica napus
A08p31190 Brassica napus
A09p21910 Brassica napus
Aa31LG10G1760 Aethionema arabicum
Aa31LG7G1400 Aethionema arabicum
Aa31LG9G7330 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1816 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.990 Anthoceros agrestis
Actinidia07508 Actinidia chinensis
Actinidia12590 Actinidia chinensis
Actinidia16768 Actinidia chinensis
Actinidia35606 Actinidia chinensis
AL1G29140 Arabidopsis lyrata
AL1G61890 Arabidopsis lyrata
AL8G12880 Arabidopsis lyrata
AL8G12910 Arabidopsis lyrata
Aqoxy1G01951 Aquilegia oxysepala
Aqoxy1G01988 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8EJJ5Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SJI6FW Arachis hypogaea
AT1G16960 Arabidopsis thaliana
AT1G53400 Arabidopsis thaliana
AT5G45740 Arabidopsis thaliana
ATR0012G029 Amborella trichopoda
Atru.chr10.1170 Acer truncatum
Atru.chr10.1559 Acer truncatum
Atru.chr10.2 Acer truncatum
Atru.chr10.26 Acer truncatum
Atru.chr10.4 Acer truncatum
Atru.chr2.2063 Acer truncatum
AUR62039486 Chenopodium quinoa
AUR62041814 Chenopodium quinoa
BcaB02g10920 Brassica carinata
BcaB03g13022 Brassica carinata
BcaB07g30870 Brassica carinata
BcaB07g33331 Brassica carinata
BcaC04g21746 Brassica carinata
BcaC07g38827 Brassica carinata
BcaC07g41448 Brassica carinata
BcaC08g43528 Brassica carinata
BcaC08g44090 Brassica carinata
BolC6t35995H Brassica oleracea
BolC6t35997H Brassica oleracea
BolC6t36670H Brassica oleracea
BolC8t49392H Brassica oleracea
BolC8t51963H Brassica oleracea
BolC9t55677H Brassica oleracea
BraA05t20721Z Brassica rapa
BraA06t23331Z Brassica rapa
BraA08t35042Z Brassica rapa
BraA09t37793Z Brassica rapa
C06p09200 Brassica napus
C06p14910 Brassica napus
C08p17670 Brassica napus
C08p44160 Brassica napus
C09p28070 Brassica napus
CAN.G1569.1 Capsicum annuum
CAN.G375.26 Capsicum annuum
CAN.G411.43 Capsicum annuum
CANSAT35G0182 Cannabis sativa
CARHR017470 Cardamine hirsuta
CARHR043610 Cardamine hirsuta
CARHR176240 Cardamine hirsuta
Carub.0001s1669 Capsella rubella
Carub.0001s4260 Capsella rubella
Carub.0008s0225 Capsella rubella
Ca_03953_v3 Cicer arietinum L.
CBR_g9071 Chara braunii
Cc02_g15680 Coffea canephora
Cc05_g10940 Coffea canephora
CDE02G3903 Ceratophyllum demersum
CDE09G0471 Ceratophyllum demersum
Cfa001103 Carpinus fangiana
Cfa019544 Carpinus fangiana
Ciclev10022935m.g Citrus clementina
CiPaw.09G136900 Carya illinoinensis
CiPaw.11G158600 Carya illinoinensis
CiPaw.12G112500 Carya illinoinensis
ClCG07G010180 Citrullus lanatus
ClCG11G017380 Citrullus lanatus
COL.COLO4_17510 Corchorus olitorius
COL.COLO4_31222 Corchorus olitorius
Cpa.g.sc7.116 Carica papaya
Cre12.g538950 Chlamydomonas reinhardtii
CsaV3_4G008140 Cucumis sativus L.
CsaV3_4G033020 Cucumis sativus L.
CSS0003763 Camellia sinensis var. sinensis
CSS0015185 Camellia sinensis var. sinensis
CSS0025943 Camellia sinensis var. sinensis
CSS0026052 Camellia sinensis var. sinensis
DCAR_003977 Daucus carota
DCAR_013270 Daucus carota
Dinv12744 Davidia involucrata
Dinv18381 Davidia involucrata
Dinv32333 Davidia involucrata
Duzib187G0408 Durio zibethinus
Duzib213G0529 Durio zibethinus
Duzib235G1380 Durio zibethinus
ECA234G0920 Erigeron canadensis
ECA236G0575 Erigeron canadensis
EL10Ac8g19987 Beta vulgaris
Eucgr.E02789 Eucalyptus grandis
Eucgr.E02790 Eucalyptus grandis
Eucgr.E02796 Eucalyptus grandis
Eucgr.E02802 Eucalyptus grandis
FAN11G2035 Fragaria x ananassa
FAN21G0888 Fragaria x ananassa
FAN25G2427 Fragaria x ananassa
FvH4_3g18130 Fragaria vesca
Glyma.12G231100 Glycine max
Glyma.13G268402 Glycine max
Gohir.A01G050900 Gossypium hirsutum
Gohir.A04G043200 Gossypium hirsutum
Gohir.A05G152900 Gossypium hirsutum
Gohir.A10G034200 Gossypium hirsutum
Gohir.D01G040750 Gossypium hirsutum
Gohir.D01G040800 Gossypium hirsutum
Gohir.D05G155566 Gossypium hirsutum
Gohir.D05G340300 Gossypium hirsutum
Gohir.D10G034900 Gossypium hirsutum
Gorai.002G050900 Gossypium raimondii
Gorai.009G160000 Gossypium raimondii
Gorai.009G366700 Gossypium raimondii
Gorai.011G036700 Gossypium raimondii
GSVIVG01014169001 Vitis vinifera
GSVIVG01021263001 Vitis vinifera
HanXRQChr04g0108541 Helianthus annuus
HanXRQChr05g0136141 Helianthus annuus
HanXRQChr11g0343851 Helianthus annuus
HanXRQChr15g0481071 Helianthus annuus
HanXRQChr15g0495191 Helianthus annuus
HanXRQChr16g0519391 Helianthus annuus
Haze_05391 Corylus avellana
Haze_09305 Corylus avellana
Hma1.2p1_0508F.1_g168730 Hydrangea macrophylla
Hma1.2p1_0519F.1_g171420 Hydrangea macrophylla
HPP92_005192 Vanilla planifolia
HPP92_021770 Vanilla planifolia
Hund21449 Selenicereus undatus
Lalb_Chr01g0016491 Lupinus albus
Lalb_Chr20g0109191 Lupinus albus
Lj3g0012606 Lotus japonicus
Lsat_1_v5_gn_1_111401 Lactuca sativa
Lsat_1_v5_gn_4_49380 Lactuca sativa
Lsat_1_v5_gn_7_102221 Lactuca sativa
Lsat_1_v5_gn_7_25460 Lactuca sativa
Lsat_1_v5_gn_7_25481 Lactuca sativa
Lsat_1_v5_gn_7_25500 Lactuca sativa
Manes.03G099800 Manihot esculenta
Mapoly0043s0028 Marchantia polymorpha
MBI06_g16701_MAGBIO Magnolia biondii
MBI07_g00453_MAGBIO Magnolia biondii
MCO05G499 Micromonas commoda
MCO05G522 Micromonas commoda
MD03G1244400 Malus domestica
MD11G1265800 Malus domestica
Medtr2g075840 Medicago truncatula
MELO3C016122.2 Cucumis melo
MELO3C025647.2 Cucumis melo
Migut.H01407 Erythranthe guttata
Migut.M00710 Erythranthe guttata
Migut.M01001 Erythranthe guttata
MSTRG.13235 Avicennia marina
MSTRG.7433 Avicennia marina
Nitab4.5_0000437g0010 Nicotiana tabacum
Nitab4.5_0000788g0040 Nicotiana tabacum
Nitab4.5_0002458g0060 Nicotiana tabacum
Nitab4.5_0005428g0050 Nicotiana tabacum
Nitab4.5_0006070g0040 Nicotiana tabacum
Nn3g21088 Nelumbo nucifera
Nn4g24114 Nelumbo nucifera
Nn6g34480 Nelumbo nucifera
Oeu016305.1 Olea europaea
Oeu043120.2 Olea europaea
Oeu061367.1 Olea europaea
Os01g0731000 Oryza sativa ssp. japonica
Os05g0529400 Oryza sativa ssp. japonica
Os09g0345000 Oryza sativa ssp. japonica
Peaxi162Scf00111g01480 Petunia axillaris
Peaxi162Scf00112g00029 Petunia axillaris
Peaxi162Scf01009g00219 Petunia axillaris
PGR031G3347 Punica granatum
PGR044G0760 Punica granatum
PGSC0003DMG400007096 Solanum tuberosum
PGSC0003DMG400027821 Solanum tuberosum
PGSC0003DMG400028464 Solanum tuberosum
Phvul.005G080900 Phaseolus vulgaris
Potri.001G387400 Populus trichocarpa
Potri.011G107700 Populus trichocarpa
Pp3c13_4320 Physcomitrium patens
Pp3c26_8630 Physcomitrium patens
Pp3c3_7030 Physcomitrium patens
PRCOL_00007025 Prasinoderma coloniale
Prupe.4G160100 Prunus persica
Psat0s2485g0120 Pisum sativum
PSO541G5213 Papaver somniferum
PSO675G4777 Papaver somniferum
QL05p049997 Quercus lobata
QL08p025716 Quercus lobata
RcHm_v2.0_Chr5g0030541 Rosa chinensis
Rhsim06G0210200 Rhododendron simsii
Sabra11G0095600 Salix brachista
Sabra16G0254700 Salix brachista
SalBow5G2452 Salvia bowleyana
SalBow7G3153 Salvia bowleyana
SalBow8G4538 Salvia bowleyana
Sc07g0002430 Simmondsia chinensis
Sc17g0005600 Simmondsia chinensis
Sed0006011 Sechium edule
Sed0018472 Sechium edule
Sed0023973 Sechium edule
SEGI_29875 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07715 Striga asiatica
SGA_v2.0_scaffold1G00093 Striga asiatica
SHI27656 Sapria himalayana
SMO351G0163 Selaginella moellendorffii
Solyc02g072100.3 Solanum lycopersicum
Solyc03g006020.3 Solanum lycopersicum
Solyc07g062290.3 Solanum lycopersicum
Sopen02g021060 Solanum pennellii
Sopen03g002020 Solanum pennellii
Sp1g15100 Schrenkiella parvula
Sp1g39950 Schrenkiella parvula
TAR626G0845 Trochodendron aralioides
TAR627G1170 Trochodendron aralioides
TAR629G1152 Trochodendron aralioides
THA.LOC104806168 Tarenaya hassleriana
THA.LOC104812312 Tarenaya hassleriana
THA.LOC104815576 Tarenaya hassleriana
Thecc.06G164700 Theobroma cacao
Thecc.07G126500 Theobroma cacao
Thhalv10001078m.g Eutrema salsugineum
Thhalv10009149m.g Eutrema salsugineum
Thhalv10011877m.g Eutrema salsugineum
TPR.G16062 Trifolium pratense
TWI09G1487 Tripterygium wilfordii
TWI38G0742 Tripterygium wilfordii
TWI39G0304 Tripterygium wilfordii
unitig_22.g6758 Utricularia gibba
unitig_26.g9342 Utricularia gibba
vmacro11954 Vaccinium macrocarpon
VMungo1080G1209 Vigna mungo
Zm00001eb098410 Zea mays
Zm00001eb120300 Zea mays
Zm00001eb154130 Zea mays
Zm00001eb293340 Zea mays

User provided reference genes

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