Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35890 Brassica napus
A05p31060 Brassica napus
A06p04040 Brassica napus
A08p04240 Brassica napus
Aa31LG10G4930 Aethionema arabicum
Aa31LG8G5420 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.978 Anthoceros agrestis
Actinidia13682 Actinidia chinensis
Actinidia31033 Actinidia chinensis
Actinidia38399 Actinidia chinensis
Actinidia39806 Actinidia chinensis
Ah.02g127220 Amaranthus hybridus
Ah.03g137920 Amaranthus hybridus
Ah.11g047160 Amaranthus hybridus
AL1G55870 Arabidopsis lyrata
AL3G31870 Arabidopsis lyrata
AL451U10020 Arabidopsis lyrata
Aqoxy3G03897 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.DV8J5Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WSMZ37 Arachis hypogaea
AT1G49000 Arabidopsis thaliana
AT3G18560 Arabidopsis thaliana
ATR0053G026 Amborella trichopoda
ATR0053G030 Amborella trichopoda
ATR1159G035 Amborella trichopoda
Atru.chr9.745 Acer truncatum
AUR62007738 Chenopodium quinoa
AUR62032184 Chenopodium quinoa
AUR62032186 Chenopodium quinoa
AUR62036944 Chenopodium quinoa
AUR62036946 Chenopodium quinoa
BcaB04g17373 Brassica carinata
BcaB06g25904 Brassica carinata
BcaC05g28601 Brassica carinata
BcaC05g28607 Brassica carinata
BcaC07g37087 Brassica carinata
BcaC08g43107 Brassica carinata
BcaC09g48814 Brassica carinata
BolC1t04528H Brassica oleracea
BolC5t33434H Brassica oleracea
BolC6t35515H Brassica oleracea
BolC8t47256H Brassica oleracea
BraA01t03667Z Brassica rapa
BraA05t21948Z Brassica rapa
BraA06t23611Z Brassica rapa
BraA08t32452Z Brassica rapa
C01p45670 Brassica napus
C05p47040 Brassica napus
C06p03790 Brassica napus
C08p04510 Brassica napus
CANSAT80G1035 Cannabis sativa
CARHR039030 Cardamine hirsuta
CARHR093930 Cardamine hirsuta
Carub.0001s3818 Capsella rubella
Carub.0003s1834 Capsella rubella
Ca_02534_v3 Cicer arietinum L.
Ca_23137_v3 Cicer arietinum L.
Cc04_g07570 Coffea canephora
Cc11_g10690 Coffea canephora
CDE06G2265 Ceratophyllum demersum
CDE07G1489 Ceratophyllum demersum
Cfa018638 Carpinus fangiana
Cfa019832 Carpinus fangiana
Ciclev10022495m.g Citrus clementina
CiPaw.15G125800 Carya illinoinensis
CiPaw.16G083500 Carya illinoinensis
CiPaw.16G083600 Carya illinoinensis
ClCG04G011300 Citrullus lanatus
ClCG06G015060 Citrullus lanatus
COL.COLO4_22704 Corchorus olitorius
Cpa.g.sc13.62 Carica papaya
CsaV3_1G003580 Cucumis sativus L.
CsaV3_1G006470 Cucumis sativus L.
CSS0037901 Camellia sinensis var. sinensis
DCAR_011342 Daucus carota
DCAR_015130 Daucus carota
DCAR_023180 Daucus carota
DCAR_030089 Daucus carota
Dinv05804 Davidia involucrata
Dinv16513 Davidia involucrata
Dinv36899 Davidia involucrata
Dinv38592 Davidia involucrata
Duzib084G1194 Durio zibethinus
Duzib205G0759 Durio zibethinus
Duzib251G0623 Durio zibethinus
ECA234G0469 Erigeron canadensis
ECA246G0188 Erigeron canadensis
EL10Ac5g11244 Beta vulgaris
EL10Ac6g14513 Beta vulgaris
Eucgr.B00693 Eucalyptus grandis
Eucgr.B03059 Eucalyptus grandis
Eucgr.K02652 Eucalyptus grandis
FAN08G1483 Fragaria x ananassa
FAN13G3198 Fragaria x ananassa
FAN18G3348 Fragaria x ananassa
FAN18G3648 Fragaria x ananassa
FvH4_5g12760 Fragaria vesca
Glyma.04G145700 Glycine max
Glyma.05G013700 Glycine max
Glyma.06G210200 Glycine max
Glyma.17G018400 Glycine max
Glyma.17G121900 Glycine max
Gohir.A11G007400 Gossypium hirsutum
Gohir.A12G265300 Gossypium hirsutum
Gohir.D11G006500 Gossypium hirsutum
Gohir.D12G265500 Gossypium hirsutum
Gorai.007G007800 Gossypium raimondii
Gorai.008G285200 Gossypium raimondii
HanXRQChr02g0042761 Helianthus annuus
HanXRQChr02g0042791 Helianthus annuus
HanXRQChr12g0374281 Helianthus annuus
HanXRQChr16g0528841 Helianthus annuus
Haze_17431 Corylus avellana
Haze_18600 Corylus avellana
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla
Hma1.2p1_0595F.1_g186020 Hydrangea macrophylla
HPP92_023771 Vanilla planifolia
HPP92_026410 Vanilla planifolia
Lalb_Chr02g0151801 Lupinus albus
Lalb_Chr07g0178561 Lupinus albus
Lalb_Chr08g0235031 Lupinus albus
Lalb_Chr11g0071931 Lupinus albus
Lalb_Chr13g0302371 Lupinus albus
Lj3P1020T26 Lonicera japonica
Lj4g0013411 Lotus japonicus
Lj5g0014631 Lotus japonicus
Lj5g0016950 Lotus japonicus
Lsat_1_v5_gn_1_15881 Lactuca sativa
Lsat_1_v5_gn_4_150041 Lactuca sativa
Lsat_1_v5_gn_4_19240 Lactuca sativa
Lsat_1_v5_gn_5_24961 Lactuca sativa
Manes.01G021300 Manihot esculenta
Manes.05G118500 Manihot esculenta
MBI10_g08547_MAGBIO Magnolia biondii
MBI16_g33826_MAGBIO Magnolia biondii
MBI16_g46922_MAGBIO Magnolia biondii
MD06G1210500 Malus domestica
MD13G1047600 Malus domestica
MD14G1221200 Malus domestica
Medtr0077s0010 Medicago truncatula
Medtr1g067620 Medicago truncatula
Medtr1g093840 Medicago truncatula
Medtr4g077777 Medicago truncatula
Medtr4g111840 Medicago truncatula
Medtr8g035940 Medicago truncatula
MELO3C002073.2 Cucumis melo
MELO3C017283.2 Cucumis melo
Migut.E00292 Erythranthe guttata
Migut.L01101 Erythranthe guttata
MSTRG.2266 Avicennia marina
MSTRG.813 Avicennia marina
Nitab4.5_0000221g0090 Nicotiana tabacum
Nitab4.5_0000410g0140 Nicotiana tabacum
Nitab4.5_0001432g0060 Nicotiana tabacum
Nitab4.5_0003716g0110 Nicotiana tabacum
Nitab4.5_0005803g0020 Nicotiana tabacum
Nitab4.5_0007105g0020 Nicotiana tabacum
Nitab4.5_0007199g0010 Nicotiana tabacum
Nn3g17698 Nelumbo nucifera
Nn4g23707 Nelumbo nucifera
Nn4g23709 Nelumbo nucifera
Oeu024100.1 Olea europaea
Oeu033581.1 Olea europaea
Oeu044623.1 Olea europaea
Oeu063395.1 Olea europaea
Os02g0711400 Oryza sativa ssp. japonica
Os05g0210525 Oryza sativa ssp. japonica
Os06g0499100 Oryza sativa ssp. japonica
Peaxi162Scf00013g00098 Petunia axillaris
Peaxi162Scf00015g00069 Petunia axillaris
Peaxi162Scf00367g00712 Petunia axillaris
PGR044G1398 Punica granatum
PGR083G1726 Punica granatum
PGR102G2995 Punica granatum
PGSC0003DMG400004055 Solanum tuberosum
PGSC0003DMG400005702 Solanum tuberosum
PGSC0003DMG400007474 Solanum tuberosum
Phvul.003G177700 Phaseolus vulgaris
Phvul.009G200800 Phaseolus vulgaris
Potri.010G130600 Populus trichocarpa
Potri.012G059500 Populus trichocarpa
Prupe.1G304400 Prunus persica
Prupe.5G216600 Prunus persica
Psat1g024640 Pisum sativum
Psat1g210120 Pisum sativum
PSO017G4670 Papaver somniferum
PSO135G0167 Papaver somniferum
PSO423G0278 Papaver somniferum
PSO478G0765 Papaver somniferum
PSO724G0959 Papaver somniferum
QL01p001031 Quercus lobata
QL10p023060 Quercus lobata
RcHm_v2.0_Chr7g0184511 Rosa chinensis
Rhsim08G0138100 Rhododendron simsii
Rhsim12G0080900 Rhododendron simsii
Sabra10G0099500 Salix brachista
Sabra12G0042700 Salix brachista
SalBow8G3504 Salvia bowleyana
Sc04g0006760 Simmondsia chinensis
Sc12g0006770 Simmondsia chinensis
Sed0001062 Sechium edule
Sed0002511 Sechium edule
Sed0004956 Sechium edule
Sed0021519 Sechium edule
SEGI_10730 Sequoiadendron giganteum
SEGI_13625 Sequoiadendron giganteum
SEGI_15898 Sequoiadendron giganteum
SEGI_25700 Sequoiadendron giganteum
SEGI_32988 Sequoiadendron giganteum
SEGI_33176 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07882 Striga asiatica
SGA_v2.0_scaffold59G20630 Striga asiatica
SMO367G0928 Selaginella moellendorffii
Solyc03g119810.1 Solanum lycopersicum
Solyc06g069250.2 Solanum lycopersicum
Sopen03g038670 Solanum pennellii
Sopen04g002030 Solanum pennellii
Sopen06g026510 Solanum pennellii
Sp1g35910 Schrenkiella parvula
Sp3g16640 Schrenkiella parvula
TAR374G0994 Trochodendron aralioides
TAR622G0697 Trochodendron aralioides
TAR629G1495 Trochodendron aralioides
THA.LOC104801662 Tarenaya hassleriana
THA.LOC104821849 Tarenaya hassleriana
Thecc.03G027600 Theobroma cacao
Thhalv10011830m.g Eutrema salsugineum
Thhalv10021558m.g Eutrema salsugineum
TPR.G11262 Trifolium pratense
TPR.G26755 Trifolium pratense
TPR.G31371 Trifolium pratense
TPR.G9792 Trifolium pratense
TPR.G9796 Trifolium pratense
TWI15G0724 Tripterygium wilfordii
TWI60G0312 Tripterygium wilfordii
TWI81G0460 Tripterygium wilfordii
unitig_52.g17150 Utricularia gibba
unitig_699.g19513 Utricularia gibba
unitig_8.g3972 Utricularia gibba
vmacro01362 Vaccinium macrocarpon
VMungo1215G1130 Vigna mungo
VMungo1309G1453 Vigna mungo
Zm00001eb252480 Zea mays
Zm00001eb252490 Zea mays
Zm00001eb281370 Zea mays
Zm00001eb356750 Zea mays
Zm00001eb359270 Zea mays

User provided reference genes

Program Settings