Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p28250 Brassica napus
A05p08890 Brassica napus
A08p23600 Brassica napus
Aa31LG5G22170 Aethionema arabicum
Aa31LG6G15900 Aethionema arabicum
Actinidia08779 Actinidia chinensis
Actinidia31888 Actinidia chinensis
Ah.15g092490 Amaranthus hybridus
AL4G33200 Arabidopsis lyrata
AL7G11400 Arabidopsis lyrata
Aqoxy1G00134 Aquilegia oxysepala
Aqoxy6G00407 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1P06TV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NV8RYU Arachis hypogaea
AT2G36960 Arabidopsis thaliana
AT4G39380 Arabidopsis thaliana
ATR0115G018 Amborella trichopoda
Atru.chr4.732 Acer truncatum
Atru.chr8.1823 Acer truncatum
AUR62003645 Chenopodium quinoa
AUR62017955 Chenopodium quinoa
AUR62026908 Chenopodium quinoa
AUR62044138 Chenopodium quinoa
AUR62044224 Chenopodium quinoa
BcaB01g03805 Brassica carinata
BcaB02g09317 Brassica carinata
BcaB03g12288 Brassica carinata
BcaC01g00287 Brassica carinata
BcaC02g07566 Brassica carinata
BcaC02g11818 Brassica carinata
BolC3t20038H Brassica oleracea
BolC4t22748H Brassica oleracea
BolC4t28051H Brassica oleracea
BolC4t28053H Brassica oleracea
BraA04t18309Z Brassica rapa
BraA05t19854Z Brassica rapa
BraA08t34317Z Brassica rapa
C03p77830 Brassica napus
C04p11020 Brassica napus
C04p65610 Brassica napus
CAN.G452.14 Capsicum annuum
CAN.G900.43 Capsicum annuum
CANSAT01G1175 Cannabis sativa
CANSAT80G2908 Cannabis sativa
CARHR131420 Cardamine hirsuta
CARHR247330 Cardamine hirsuta
Carub.0004s1880 Capsella rubella
Carub.0007s0130 Capsella rubella
Ca_22518_v3 Cicer arietinum L.
Ca_29601_v3 Cicer arietinum L.
CBR_g26407 Chara braunii
Cc04_g12180 Coffea canephora
Cc04_g13310 Coffea canephora
Cc07_g16600 Coffea canephora
CDE02G0847 Ceratophyllum demersum
CDE06G1853 Ceratophyllum demersum
Cfa002782 Carpinus fangiana
Cfa017598 Carpinus fangiana
Ciclev10011099m.g Citrus clementina
Ciclev10025563m.g Citrus clementina
CiPaw.04G089200 Carya illinoinensis
CiPaw.10G130300 Carya illinoinensis
CiPaw.10G130400 Carya illinoinensis
ClCG01G015890 Citrullus lanatus
ClCG10G020190 Citrullus lanatus
COL.COLO4_03468 Corchorus olitorius
COL.COLO4_10010 Corchorus olitorius
Cpa.g.sc56.26 Carica papaya
Cpa.g.sc72.56 Carica papaya
CsaV3_3G035910 Cucumis sativus L.
CsaV3_6G042170 Cucumis sativus L.
CSS0021053 Camellia sinensis var. sinensis
CSS0030915 Camellia sinensis var. sinensis
CSS0035026 Camellia sinensis var. sinensis
CSS0037052 Camellia sinensis var. sinensis
DCAR_016671 Daucus carota
DCAR_017687 Daucus carota
Dinv16428 Davidia involucrata
Dinv35782 Davidia involucrata
Dinv35783 Davidia involucrata
Dinv37307 Davidia involucrata
Duzib093G0446 Durio zibethinus
Duzib128G1402 Durio zibethinus
Duzib147G0082 Durio zibethinus
Duzib264G1090 Durio zibethinus
ECA238G4143 Erigeron canadensis
ECA248G2038 Erigeron canadensis
EL10Ac6g15223 Beta vulgaris
EL10Ac7g16619 Beta vulgaris
Eucgr.A01690 Eucalyptus grandis
Eucgr.I00296 Eucalyptus grandis
FAN02G3555 Fragaria x ananassa
FAN05G5473 Fragaria x ananassa
FAN09G1888 Fragaria x ananassa
FAN14G2570 Fragaria x ananassa
FAN28G1978 Fragaria x ananassa
FvH4_1g23150 Fragaria vesca
FvH4_6g16260 Fragaria vesca
Glyma.02G048100 Glycine max
Glyma.05G186000 Glycine max
Glyma.06G207650 Glycine max
Glyma.08G144600 Glycine max
Glyma.16G128300 Glycine max
Gohir.A01G214500 Gossypium hirsutum
Gohir.A04G072200 Gossypium hirsutum
Gohir.A12G092100 Gossypium hirsutum
Gohir.D01G203000 Gossypium hirsutum
Gohir.D04G110700 Gossypium hirsutum
Gohir.D12G093200 Gossypium hirsutum
Gorai.002G247700 Gossypium raimondii
Gorai.008G100900 Gossypium raimondii
Gorai.009G414900 Gossypium raimondii
GSVIVG01022269001 Vitis vinifera
GSVIVG01025725001 Vitis vinifera
HanXRQChr01g0027631 Helianthus annuus
HanXRQChr01g0027651 Helianthus annuus
HanXRQChr02g0053371 Helianthus annuus
HanXRQChr09g0253971 Helianthus annuus
HanXRQChr09g0264541 Helianthus annuus
HanXRQChr17g0566521 Helianthus annuus
HanXRQChr17g0568771 Helianthus annuus
Haze_20554 Corylus avellana
Haze_25079 Corylus avellana
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla
Hma1.2p1_0529F.1_g173250 Hydrangea macrophylla
HPP92_012371 Vanilla planifolia
HPP92_020047 Vanilla planifolia
Hund19627 Selenicereus undatus
Lalb_Chr09g0333141 Lupinus albus
Lalb_Chr12g0203431 Lupinus albus
Lalb_Chr16g0391251 Lupinus albus
Lj2A116G73 Lonicera japonica
Lj2A568G42 Lonicera japonica
Lj4g0005520 Lotus japonicus
Lj4g0021696 Lotus japonicus
Lsat_1_v5_gn_4_138421 Lactuca sativa
Lsat_1_v5_gn_4_15300 Lactuca sativa
Lsat_1_v5_gn_6_11100 Lactuca sativa
Lsat_1_v5_gn_9_91540 Lactuca sativa
Manes.08G009700 Manihot esculenta
Manes.09G067140 Manihot esculenta
Manes.13G086900 Manihot esculenta
Mapoly0009s0010 Marchantia polymorpha
MBI01_g34160_MAGBIO Magnolia biondii
MBI11_g28438_MAGBIO Magnolia biondii
MBI19_g35569_MAGBIO Magnolia biondii
MCO07G427 Micromonas commoda
MD01G1014700 Malus domestica
MD12G1113900 Malus domestica
MD15G1336300 Malus domestica
Medtr8g069965 Medicago truncatula
MELO3C007455.2 Cucumis melo
MELO3C009350.2 Cucumis melo
Migut.L00057 Erythranthe guttata
Migut.L01697 Erythranthe guttata
MSTRG.23300 Avicennia marina
MSTRG.26694 Avicennia marina
Nitab4.5_0000184g0050 Nicotiana tabacum
Nitab4.5_0002632g0070 Nicotiana tabacum
Nitab4.5_0003861g0040 Nicotiana tabacum
Nitab4.5_0004121g0010 Nicotiana tabacum
Nitab4.5_0005242g0010 Nicotiana tabacum
Nitab4.5_0027768g0010 Nicotiana tabacum
Nn1g06008 Nelumbo nucifera
Nn2g11575 Nelumbo nucifera
Nn2g13773 Nelumbo nucifera
Nn5g28815 Nelumbo nucifera
Oeu040375.1 Olea europaea
Oeu064301.1 Olea europaea
Os01g0182400 Oryza sativa ssp. japonica
Os03g0241100 Oryza sativa ssp. japonica
Os03g0773100 Oryza sativa ssp. japonica
Os07g0634100 Oryza sativa ssp. japonica
Peaxi162Scf00025g03315 Petunia axillaris
Peaxi162Scf00701g00031 Petunia axillaris
PGR004G0152 Punica granatum
PGR004G0677 Punica granatum
PGSC0003DMG400019695 Solanum tuberosum
Phvul.002G267200 Phaseolus vulgaris
Phvul.003G261500 Phaseolus vulgaris
Potri.005G086800 Populus trichocarpa
Potri.006G125400 Populus trichocarpa
Potri.007G077700 Populus trichocarpa
Potri.016G091700 Populus trichocarpa
Prupe.6G167500 Prunus persica
Prupe.6G232900 Prunus persica
Psat4g113080 Pisum sativum
Psat4g125720 Pisum sativum
Psat7g049880 Pisum sativum
Psat7g123280 Pisum sativum
PSO339G6183 Papaver somniferum
PSO541G5550 Papaver somniferum
PSO675G1764 Papaver somniferum
PSO801G0542 Papaver somniferum
QL06p031438 Quercus lobata
QL07p043643 Quercus lobata
RcHm_v2.0_Chr2g0117871 Rosa chinensis
RcHm_v2.0_Chr3g0470121 Rosa chinensis
Rhsim03G0092600 Rhododendron simsii
Rhsim10G0147600 Rhododendron simsii
Sabra05G0071500 Salix brachista
Sabra06G0099000 Salix brachista
Sabra16G0097400 Salix brachista
SalBow5G1472 Salvia bowleyana
SalBow5G4156 Salvia bowleyana
SalBow5G4719 Salvia bowleyana
Sc02g0001680 Simmondsia chinensis
Sc16g0004110 Simmondsia chinensis
Sed0003779 Sechium edule
Sed0017434 Sechium edule
Sed0021564 Sechium edule
SGA_v2.0_scaffold112G31671 Striga asiatica
SGA_v2.0_scaffold34G13632 Striga asiatica
SGA_v2.0_scaffold35G14132 Striga asiatica
SHI12444 Sapria himalayana
SMO116G0270 Selaginella moellendorffii
Solyc04g051450.3 Solanum lycopersicum
Solyc09g008100.4 Solanum lycopersicum
Sopen04g022830 Solanum pennellii
Sopen09g002910 Solanum pennellii
Sp4g19240 Schrenkiella parvula
Sp7g36480 Schrenkiella parvula
TAR628G0161 Trochodendron aralioides
TAR633G0396 Trochodendron aralioides
TAR636G1313 Trochodendron aralioides
THA.LOC104804139 Tarenaya hassleriana
THA.LOC104806477 Tarenaya hassleriana
Thecc.01G116700 Theobroma cacao
Thecc.05G064900 Theobroma cacao
Thhalv10016298m.g Eutrema salsugineum
Thhalv10024889m.g Eutrema salsugineum
TPR.G2182 Trifolium pratense
TPR.G24800 Trifolium pratense
TWI53G0691 Tripterygium wilfordii
TWI74G0434 Tripterygium wilfordii
TWI75G0453 Tripterygium wilfordii
unitig_37.g12532 Utricularia gibba
vmacro07286 Vaccinium macrocarpon
vmacro12879 Vaccinium macrocarpon
VMungo0251G2590 Vigna mungo
VMungo0251G3377 Vigna mungo
Zm00001eb010280 Zea mays
Zm00001eb058920 Zea mays
Zm00001eb122120 Zea mays
Zm00001eb399030 Zea mays

User provided reference genes

Program Settings