Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p04250 Brassica napus
A02p16910 Brassica napus
A07p37230 Brassica napus
Aa31LG4G10190 Aethionema arabicum
Aa31sc262G50 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2596 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.254 Anthoceros agrestis
Actinidia32446 Actinidia chinensis
Actinidia32447 Actinidia chinensis
Actinidia40500 Actinidia chinensis
Ah.08g209400 Amaranthus hybridus
Ah.14g084900 Amaranthus hybridus
AL2G30270 Arabidopsis lyrata
AL6G28620 Arabidopsis lyrata
Aqoxy1G01227 Aquilegia oxysepala
Aqoxy1G01933 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2KYQ06 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.681S5P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KPC10E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RI7QVZ Arachis hypogaea
AT1G70820 Arabidopsis thaliana
AT5G17522 Arabidopsis thaliana
AT5G17530 Arabidopsis thaliana
ATR0048G007 Amborella trichopoda
ATR0317G082 Amborella trichopoda
Atru.chr11.668 Acer truncatum
Atru.chr11.669 Acer truncatum
Atru.chr12.759 Acer truncatum
Atru.chr12.783 Acer truncatum
AUR62006403 Chenopodium quinoa
AUR62014188 Chenopodium quinoa
AUR62029746 Chenopodium quinoa
AUR62039518 Chenopodium quinoa
BcaB03g14845 Brassica carinata
BcaC03g13525 Brassica carinata
BcaC03g15238 Brassica carinata
BcaC05g28876 Brassica carinata
BcaC08g46528 Brassica carinata
BcaC08g46530 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p01890 Brassica napus
BolC2t06825H Brassica oleracea
BolC2t08871H Brassica oleracea
BolC6t39549H Brassica oleracea
BraA02t05388Z Brassica rapa
BraA02t06743Z Brassica rapa
BraA07t31283Z Brassica rapa
C02p09130 Brassica napus
C02p28270 Brassica napus
C05p49990 Brassica napus
C06p44900 Brassica napus
CAN.G70.8 Capsicum annuum
CAN.G70.9 Capsicum annuum
CAN.G839.3 Capsicum annuum
CANSAT01G0372 Cannabis sativa
CANSAT56G2733 Cannabis sativa
CARHR064080 Cardamine hirsuta
CARHR195660 Cardamine hirsuta
Carub.0002s1757 Capsella rubella
Carub.0006s1576 Capsella rubella
Ca_10569_v3 Cicer arietinum L.
Ca_18747_v3 Cicer arietinum L.
Cc02_g11310 Coffea canephora
Cc11_g08330 Coffea canephora
CDE08G1164 Ceratophyllum demersum
Cfa014971 Carpinus fangiana
Ciclev10014623m.g Citrus clementina
Ciclev10031045m.g Citrus clementina
CiPaw.01G272300 Carya illinoinensis
CiPaw.06G047800 Carya illinoinensis
ClCG07G006020 Citrullus lanatus
ClCG08G007530 Citrullus lanatus
COL.COLO4_13112 Corchorus olitorius
Cpa.g.sc2.243 Carica papaya
Cpa.g.sc53.86 Carica papaya
Cre03.g144707 Chlamydomonas reinhardtii
CsaV3_5G014670 Cucumis sativus L.
CsaV3_6G036460 Cucumis sativus L.
CSS0006255 Camellia sinensis var. sinensis
CSS0015131 Camellia sinensis var. sinensis
CSS0018456 Camellia sinensis var. sinensis
CSS0025394 Camellia sinensis var. sinensis
CSS0030320 Camellia sinensis var. sinensis
CSS0031142 Camellia sinensis var. sinensis
CSS0038780 Camellia sinensis var. sinensis
CSS0042688 Camellia sinensis var. sinensis
DCAR_006435 Daucus carota
DCAR_026782 Daucus carota
Dinv28035 Davidia involucrata
Dinv36436 Davidia involucrata
Duzib106G1770 Durio zibethinus
Duzib251G0406 Durio zibethinus
ECA238G0500 Erigeron canadensis
ECA246G2610 Erigeron canadensis
EL10Ac6g14180 Beta vulgaris
EL10Ac7g17090 Beta vulgaris
Eucgr.B02929 Eucalyptus grandis
Eucgr.D02001 Eucalyptus grandis
Eucgr.H01421 Eucalyptus grandis
Eucgr.J01084 Eucalyptus grandis
Eucgr.L01855 Eucalyptus grandis
FAN03G0883 Fragaria x ananassa
FAN06G4795 Fragaria x ananassa
FAN07G2027 Fragaria x ananassa
FAN10G1943 Fragaria x ananassa
FAN10G3729 Fragaria x ananassa
FAN12G2619 Fragaria x ananassa
FAN17G0747 Fragaria x ananassa
FAN17G1333 Fragaria x ananassa
FAN17G2228 Fragaria x ananassa
FAN22G0836 Fragaria x ananassa
FAN22G2383 Fragaria x ananassa
FvH4_4g32820 Fragaria vesca
FvH4_7g19370 Fragaria vesca
Glyma.10G210700 Glycine max
Glyma.20G018000 Glycine max
Glyma.20G179900 Glycine max
Gohir.A01G150600 Gossypium hirsutum
Gohir.A10G205400 Gossypium hirsutum
Gohir.D01G143800 Gossypium hirsutum
Gohir.D10G213700 Gossypium hirsutum
Gorai.002G177300 Gossypium raimondii
Gorai.011G239000 Gossypium raimondii
GSVIVG01001963001 Vitis vinifera
GSVIVG01011714001 Vitis vinifera
GSVIVG01016267001 Vitis vinifera
HanXRQChr04g0114431 Helianthus annuus
HanXRQChr14g0456851 Helianthus annuus
HanXRQChr16g0502991 Helianthus annuus
HanXRQChr17g0558471 Helianthus annuus
HanXRQChr17g0567431 Helianthus annuus
Haze_10950 Corylus avellana
Haze_10954 Corylus avellana
Haze_16886 Corylus avellana
Hma1.2p1_0490F.1_g164240 Hydrangea macrophylla
Hund20229 Selenicereus undatus
Lalb_Chr02g0142211 Lupinus albus
Lalb_Chr06g0162361 Lupinus albus
Lalb_Chr16g0385101 Lupinus albus
Lj1C913T2 Lonicera japonica
Lj3A867T56 Lonicera japonica
Lj4g0021464 Lotus japonicus
Lj5g0013059 Lotus japonicus
Lsat_1_v5_gn_2_112341 Lactuca sativa
Lsat_1_v5_gn_3_55461 Lactuca sativa
Manes.10G046600 Manihot esculenta
Manes.17G079900 Manihot esculenta
Mapoly0011s0106 Marchantia polymorpha
MBI07_g26016_MAGBIO Magnolia biondii
MBI19_g14788_MAGBIO Magnolia biondii
MBI19_g14789_MAGBIO Magnolia biondii
MCO09G500 Micromonas commoda
MD01G1108200 Malus domestica
MD07G1174100 Malus domestica
MD07G1174200 Malus domestica
MD07G1174300 Malus domestica
MD13G1022800 Malus domestica
MD16G1023700 Malus domestica
Medtr1g094980 Medicago truncatula
Medtr4g084270 Medicago truncatula
MELO3C019799.2 Cucumis melo
MELO3C026420.2 Cucumis melo
Migut.E00441 Erythranthe guttata
Migut.F01983 Erythranthe guttata
MSTRG.2154 Avicennia marina
Nitab4.5_0000089g0030 Nicotiana tabacum
Nitab4.5_0000089g0040 Nicotiana tabacum
Nitab4.5_0000135g0080 Nicotiana tabacum
Nitab4.5_0001053g0080 Nicotiana tabacum
Nitab4.5_0001053g0090 Nicotiana tabacum
Nitab4.5_0002524g0030 Nicotiana tabacum
Nn2g10811 Nelumbo nucifera
Nn4g24229 Nelumbo nucifera
Oeu031346.1 Olea europaea
Oeu063595.1 Olea europaea
Os06g0476200 Oryza sativa ssp. japonica
Os07g0447800 Oryza sativa ssp. japonica
Peaxi162Scf00159g01647 Petunia axillaris
Peaxi162Scf01011g00005 Petunia axillaris
PGR044G1821 Punica granatum
PGR102G3270 Punica granatum
PGSC0003DMG400001912 Solanum tuberosum
Phvul.002G096000 Phaseolus vulgaris
Phvul.007G094900 Phaseolus vulgaris
Potri.008G039200 Populus trichocarpa
Potri.008G131400 Populus trichocarpa
Potri.010G223000 Populus trichocarpa
Pp3c20_2120 Physcomitrium patens
PRCOL_00000723 Prasinoderma coloniale
Prupe.1G329200 Prunus persica
Prupe.2G213100 Prunus persica
Psat6g183400 Pisum sativum
Psat7g128920 Pisum sativum
PSO017G4836 Papaver somniferum
PSO339G3461 Papaver somniferum
PSO384G1174 Papaver somniferum
PSO478G3875 Papaver somniferum
QL03p033645 Quercus lobata
QL03p033690 Quercus lobata
QL08p055739 Quercus lobata
RcHm_v2.0_Chr1g0363251 Rosa chinensis
RcHm_v2.0_Chr4g0441801 Rosa chinensis
RcHm_v2.0_Chr5g0046321 Rosa chinensis
Rhsim09G0064600 Rhododendron simsii
Rhsim09G0151400 Rhododendron simsii
Sabra08G0026900 Salix brachista
Sabra08G0100200 Salix brachista
Sabra10G0172400 Salix brachista
SalBow2G1819 Salvia bowleyana
SalBow4G0916 Salvia bowleyana
Sc04g0006300 Simmondsia chinensis
Sc09g0006270 Simmondsia chinensis
Sed0015272 Sechium edule
Sed0025209 Sechium edule
SGA_v2.0_scaffold257G45701 Striga asiatica
SGA_v2.0_scaffold42G16019 Striga asiatica
SGA_v2.0_scaffold478G52239 Striga asiatica
SHI08822 Sapria himalayana
SHI08823 Sapria himalayana
SMO144G0140 Selaginella moellendorffii
Solyc04g005030.4 Solanum lycopersicum
Solyc05g026490.3 Solanum lycopersicum
Sopen04g001040 Solanum pennellii
Sopen05g022920 Solanum pennellii
Sp5g26000 Schrenkiella parvula
Sp6g26690 Schrenkiella parvula
TAR369G0845 Trochodendron aralioides
TAR629G0125 Trochodendron aralioides
THA.LOC104799379 Tarenaya hassleriana
THA.LOC104809154 Tarenaya hassleriana
Thecc.02G286500 Theobroma cacao
Thecc.10G074900 Theobroma cacao
Thecc.10G075000 Theobroma cacao
Thecc.10G075100 Theobroma cacao
Thhalv10012819m.g Eutrema salsugineum
Thhalv10018305m.g Eutrema salsugineum
TPR.G1920 Trifolium pratense
TPR.G38283 Trifolium pratense
TWI15G0073 Tripterygium wilfordii
TWI77G0462 Tripterygium wilfordii
unitig_699.g19537 Utricularia gibba
unitig_8.g4691 Utricularia gibba
vmacro00405 Vaccinium macrocarpon
vmacro04868 Vaccinium macrocarpon
VMungo0251G3764 Vigna mungo
VMungo0720G2543 Vigna mungo
Zm00001eb306410 Zea mays
Zm00001eb308980 Zea mays

User provided reference genes

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