Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p44540 Brassica napus
A09p11140 Brassica napus
Aa31LG3G2760 Aethionema arabicum
Aa31LG8G14030 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis
Actinidia04566 Actinidia chinensis
Actinidia08736 Actinidia chinensis
Actinidia08737 Actinidia chinensis
Actinidia34299 Actinidia chinensis
Ah.04g157280 Amaranthus hybridus
Ah.13g072670 Amaranthus hybridus
AL3G42700 Arabidopsis lyrata
AL3G49530 Arabidopsis lyrata
Aqoxy3G02040 Aquilegia oxysepala
Aqoxy7G00884 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea
AT2G04940 Arabidopsis thaliana
AT2G16790 Arabidopsis thaliana
ATR0829G224 Amborella trichopoda
ATR0829G228 Amborella trichopoda
Atru.chr12.2008 Acer truncatum
Atru.chr12.2012 Acer truncatum
AUR62005914 Chenopodium quinoa
AUR62028150 Chenopodium quinoa
AUR62028151 Chenopodium quinoa
BcaB03g16409 Brassica carinata
BcaB07g31750 Brassica carinata
BcaB08g34494 Brassica carinata
BcaC01g03181 Brassica carinata
BcaC04g23004 Brassica carinata
BolC3t17806H Brassica oleracea
BolC9t54208H Brassica oleracea
BraA03t13587Z Brassica rapa
BraA09t36756Z Brassica rapa
C03p55340 Brassica napus
C07p06790 Brassica napus
C09p13130 Brassica napus
CAN.G1110.21 Capsicum annuum
CAN.G289.47 Capsicum annuum
CANSAT21G1155 Cannabis sativa
CANSAT21G1863 Cannabis sativa
CARHR102970 Cardamine hirsuta
CARHR107040 Cardamine hirsuta
Carub.0003s2662 Capsella rubella
Carub.0003s3061 Capsella rubella
Ca_04931_v3 Cicer arietinum L.
Ca_14681_v3 Cicer arietinum L.
Ca_28676_v3 Cicer arietinum L.
Ca_29855_v3 Cicer arietinum L.
CBR_g26239 Chara braunii
Cc03_g15080 Coffea canephora
Cc05_g12950 Coffea canephora
Cfa015896 Carpinus fangiana
Cfa023729 Carpinus fangiana
Cfa026682 Carpinus fangiana
Ciclev10001355m.g Citrus clementina
Ciclev10032834m.g Citrus clementina
CiPaw.05G237000 Carya illinoinensis
CiPaw.05G237100 Carya illinoinensis
ClCG01G005050 Citrullus lanatus
ClCG07G017310 Citrullus lanatus
COL.COLO4_19775 Corchorus olitorius
COL.COLO4_24619 Corchorus olitorius
Cpa.g.sc67.52 Carica papaya
Cpa.g.sc67.53 Carica papaya
Cre06.g267850 Chlamydomonas reinhardtii
Cre08.g385750 Chlamydomonas reinhardtii
CsaV3_4G004510 Cucumis sativus L.
CsaV3_5G005340 Cucumis sativus L.
CSS0010295 Camellia sinensis var. sinensis
CSS0012005 Camellia sinensis var. sinensis
CSS0036576 Camellia sinensis var. sinensis
DCAR_009002 Daucus carota
DCAR_010548 Daucus carota
Dinv17267 Davidia involucrata
Dinv29173 Davidia involucrata
Duzib133G0126 Durio zibethinus
Duzib211G0014 Durio zibethinus
ECA233G3743 Erigeron canadensis
ECA236G2689 Erigeron canadensis
EL10Ac3g05098 Beta vulgaris
EL10Ac3g05099 Beta vulgaris
Eucgr.K00095 Eucalyptus grandis
Eucgr.K03383 Eucalyptus grandis
FAN01G1859 Fragaria x ananassa
FAN03G1078 Fragaria x ananassa
FAN10G0267 Fragaria x ananassa
FAN10G3482 Fragaria x ananassa
FvH4_7g33580 Fragaria vesca
FvH4_7g33590 Fragaria vesca
FvH4_7g33591 Fragaria vesca
FvH4_7g33592 Fragaria vesca
FvH4_7g33593 Fragaria vesca
Glyma.08G289700 Glycine max
Glyma.08G289900 Glycine max
Glyma.12G019100 Glycine max
Glyma.18G134600 Glycine max
Glyma.18G134800 Glycine max
Gohir.A09G055000 Gossypium hirsutum
Gohir.A11G169200 Gossypium hirsutum
Gohir.D09G053900 Gossypium hirsutum
Gohir.D11G175400 Gossypium hirsutum
Gorai.006G053300 Gossypium raimondii
Gorai.007G188000 Gossypium raimondii
GSVIVG01024449001 Vitis vinifera
GSVIVG01024450001 Vitis vinifera
HanXRQChr04g0105251 Helianthus annuus
HanXRQChr10g0305151 Helianthus annuus
HanXRQChr15g0477781 Helianthus annuus
Haze_00591 Corylus avellana
Haze_00592 Corylus avellana
Haze_00593 Corylus avellana
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla
HPP92_002455 Vanilla planifolia
HPP92_015127 Vanilla planifolia
Hund09770 Selenicereus undatus
Lalb_Chr03g0024441 Lupinus albus
Lalb_Chr09g0335071 Lupinus albus
Lj1C1032G6 Lonicera japonica
Lj1P1032T28 Lonicera japonica
Lj2A621G40 Lonicera japonica
Lj2C621T3 Lonicera japonica
Lj3A801T16 Lonicera japonica
Lj3g0008833 Lotus japonicus
Lj4g0019925 Lotus japonicus
Lsat_1_v5_gn_5_146100 Lactuca sativa
Lsat_1_v5_gn_8_3761 Lactuca sativa
Lsat_1_v5_gn_8_74380 Lactuca sativa
Manes.08G164400 Manihot esculenta
Manes.08G164500 Manihot esculenta
Mapoly0041s0072 Marchantia polymorpha
Mapoly0046s0106 Marchantia polymorpha
MBI04_g21139_MAGBIO Magnolia biondii
MCO08G110 Micromonas commoda
MD01G1233600 Malus domestica
MD01G1233700 Malus domestica
MD07G1305700 Malus domestica
MD07G1305800 Malus domestica
Medtr4g077510 Medicago truncatula
Medtr8g063470 Medicago truncatula
MELO3C005426.2 Cucumis melo
MELO3C017614.2 Cucumis melo
Migut.I00118 Erythranthe guttata
Migut.M01834 Erythranthe guttata
MSTRG.11401 Avicennia marina
MSTRG.17884 Avicennia marina
Nitab4.5_0000207g0420 Nicotiana tabacum
Nitab4.5_0000701g0050 Nicotiana tabacum
Nitab4.5_0000701g0060 Nicotiana tabacum
Nitab4.5_0000793g0020 Nicotiana tabacum
Nitab4.5_0000793g0030 Nicotiana tabacum
Nitab4.5_0002229g0090 Nicotiana tabacum
Nn1g02009 Nelumbo nucifera
Nn1g02011 Nelumbo nucifera
Nn3g19277 Nelumbo nucifera
Oeu014983.2 Olea europaea
Oeu053393.1 Olea europaea
Os02g0238500 Oryza sativa ssp. japonica
Os04g0599400 Oryza sativa ssp. japonica
Os06g0114650 Oryza sativa ssp. japonica
Peaxi162Scf00195g01110 Petunia axillaris
Peaxi162Scf00257g00081 Petunia axillaris
PGR004G1571 Punica granatum
PGR004G1694 Punica granatum
PGSC0003DMG400012810 Solanum tuberosum
PGSC0003DMG400024993 Solanum tuberosum
Phvul.003G053900 Phaseolus vulgaris
Phvul.003G054200 Phaseolus vulgaris
Phvul.011G021500 Phaseolus vulgaris
Potri.015G079500 Populus trichocarpa
Potri.019G048200 Populus trichocarpa
Pp3c3_18900 Physcomitrium patens
Pp3c5_23880 Physcomitrium patens
Pp3c5_23890 Physcomitrium patens
Pp3c5_2750 Physcomitrium patens
PRCOL_00003203 Prasinoderma coloniale
PRCOL_00006278 Prasinoderma coloniale
Prupe.2G323800 Prunus persica
Prupe.2G323900 Prunus persica
Psat4g127040 Pisum sativum
Psat7g171360 Pisum sativum
PSO063G7569 Papaver somniferum
PSO675G4133 Papaver somniferum
PSO675G5486 Papaver somniferum
PSO717G0064 Papaver somniferum
PSO782G0547 Papaver somniferum
QL09p025824 Quercus lobata
QL09p025834 Quercus lobata
RcHm_v2.0_Chr1g0383841 Rosa chinensis
RcHm_v2.0_Chr1g0383851 Rosa chinensis
Rhsim03G0164800 Rhododendron simsii
Sabra15G0103700 Salix brachista
Sabra15G0103800 Salix brachista
Sabra19G0057600 Salix brachista
SalBow5G5430 Salvia bowleyana
SalBow8G2774 Salvia bowleyana
Sc13g0010800 Simmondsia chinensis
Sc19g0000240 Simmondsia chinensis
Sed0001745 Sechium edule
Sed0006194 Sechium edule
SEGI_10035 Sequoiadendron giganteum
SEGI_17331 Sequoiadendron giganteum
SEGI_38885 Sequoiadendron giganteum
SGA_v2.0_scaffold70G23573 Striga asiatica
SHI03438 Sapria himalayana
SMO174G0264 Selaginella moellendorffii
SMO196G0267 Selaginella moellendorffii
Solyc03g006452.1 Solanum lycopersicum
Solyc03g006454.1 Solanum lycopersicum
Solyc03g006460.4 Solanum lycopersicum
Solyc10g006600.4 Solanum lycopersicum
Sopen03g002460 Solanum pennellii
Sopen10g002540 Solanum pennellii
Sp3g23560 Schrenkiella parvula
Sp3g29930 Schrenkiella parvula
TAR374G0973 Trochodendron aralioides
TAR629G0193 Trochodendron aralioides
THA.LOC104803694 Tarenaya hassleriana
THA.LOC104815357 Tarenaya hassleriana
Thecc.04G001600 Theobroma cacao
Thecc.08G172500 Theobroma cacao
Thhalv10002559m.g Eutrema salsugineum
Thhalv10022876m.g Eutrema salsugineum
TPR.G19958 Trifolium pratense
TPR.G21490 Trifolium pratense
TPR.G26908 Trifolium pratense
TPR.G670 Trifolium pratense
TWI34G0554 Tripterygium wilfordii
TWI60G0329 Tripterygium wilfordii
unitig_62.g23564 Utricularia gibba
unitig_746.g26651 Utricularia gibba
vmacro06499 Vaccinium macrocarpon
vmacro06500 Vaccinium macrocarpon
VMungo0251G2787 Vigna mungo
VMungo1127G1706 Vigna mungo
VMungo1127G2112 Vigna mungo
Zm00001eb071960 Zea mays
Zm00001eb177740 Zea mays
Zm00001eb315690 Zea mays
Zm00001eb430250 Zea mays

User provided reference genes

Program Settings