Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01820 Brassica napus
A02p09980 Brassica napus
A03p06410 Brassica napus
A10p24930 Brassica napus
Aa31LG11G14860 Aethionema arabicum
Aa31LG11G7510 Aethionema arabicum
Aa31LG3G14380 Aethionema arabicum
Aa31LG5G11140 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1808 Anthoceros agrestis
Actinidia19555 Actinidia chinensis
Actinidia22123 Actinidia chinensis
Actinidia30593 Actinidia chinensis
Actinidia37721 Actinidia chinensis
Ah.02g131510 Amaranthus hybridus
AL3G10080 Arabidopsis lyrata
AL6G23900 Arabidopsis lyrata
AL6G24720 Arabidopsis lyrata
Aqoxy1G01059 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.K32A9U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VG0MIY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X5ZWNG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X87CF4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YP2L4B Arachis hypogaea
AT3G02020 Arabidopsis thaliana
AT5G13280 Arabidopsis thaliana
AT5G14060 Arabidopsis thaliana
ATR0582G352 Amborella trichopoda
Atru.chr6.2651 Acer truncatum
Atru.chr6.2683 Acer truncatum
AUR62005706 Chenopodium quinoa
AUR62028850 Chenopodium quinoa
BcaB01g05311 Brassica carinata
BcaB01g06347 Brassica carinata
BcaB05g22171 Brassica carinata
BcaC03g14275 Brassica carinata
BcaC04g19126 Brassica carinata
BcaNung01166 Brassica carinata
BcaNung01875 Brassica carinata
BolC2t06545H Brassica oleracea
BolC2t07754H Brassica oleracea
BolC3t13241H Brassica oleracea
BolC3t13242H Brassica oleracea
BolC5t32387H Brassica oleracea
BolC9t59219H Brassica oleracea
BraA02t05156Z Brassica rapa
BraA02t06062Z Brassica rapa
BraA03t09970Z Brassica rapa
BraA03t09971Z Brassica rapa
BraA10t44555Z Brassica rapa
C02p06030 Brassica napus
C02p16560 Brassica napus
C03p07390 Brassica napus
C03p07400 Brassica napus
C09p63800 Brassica napus
CAN.G282.119 Capsicum annuum
CANSAT01G0312 Cannabis sativa
CANSAT64G0432 Cannabis sativa
CARHR074940 Cardamine hirsuta
CARHR199300 Cardamine hirsuta
CARHR200160 Cardamine hirsuta
Carub.0003s0008 Capsella rubella
Carub.0006s1145 Capsella rubella
Carub.0006s1225 Capsella rubella
Ca_08133_v3 Cicer arietinum L.
Ca_13677_v3 Cicer arietinum L.
Ca_29149_v3 Cicer arietinum L.
CBR_g29552 Chara braunii
CBR_g29560 Chara braunii
Cc07_g01220 Coffea canephora
CDE02G3698 Ceratophyllum demersum
CDE06G2770 Ceratophyllum demersum
CDE09G0707 Ceratophyllum demersum
Cfa007168 Carpinus fangiana
Cfa009439 Carpinus fangiana
Cfa024595 Carpinus fangiana
Ciclev10014778m.g Citrus clementina
CiPaw.03G002800 Carya illinoinensis
CiPaw.05G102400 Carya illinoinensis
CiPaw.06G108600 Carya illinoinensis
ClCG01G007810 Citrullus lanatus
COL.COLO4_04500 Corchorus olitorius
COL.COLO4_13364 Corchorus olitorius
Cpa.g.sc70.76 Carica papaya
Cre10.g458500 Chlamydomonas reinhardtii
CsaV3_5G024880 Cucumis sativus L.
CSS0006289 Camellia sinensis var. sinensis
CSS0028953 Camellia sinensis var. sinensis
CSS0030139 Camellia sinensis var. sinensis
CSS0037878 Camellia sinensis var. sinensis
CSS0045995 Camellia sinensis var. sinensis
CSS0046683 Camellia sinensis var. sinensis
DCAR_014474 Daucus carota
Dinv15387 Davidia involucrata
Dinv19140 Davidia involucrata
Dinv19141 Davidia involucrata
Dinv33284 Davidia involucrata
Duzib052G0841 Durio zibethinus
Duzib147G0062 Durio zibethinus
Duzib264G0273 Durio zibethinus
ECA238G2884 Erigeron canadensis
ECA246G0795 Erigeron canadensis
ECA246G3665 Erigeron canadensis
EL10Ac6g13597 Beta vulgaris
Eucgr.I01605 Eucalyptus grandis
FAN02G3626 Fragaria x ananassa
FAN05G4237 Fragaria x ananassa
FAN07G1996 Fragaria x ananassa
FAN12G0338 Fragaria x ananassa
FAN14G4219 Fragaria x ananassa
FvH4_4g22800 Fragaria vesca
FvH4_6g54240 Fragaria vesca
Glyma.02G066100 Glycine max
Glyma.16G049300 Glycine max
Glyma.16G147300 Glycine max
Glyma.19G102100 Glycine max
Gohir.A07G232400 Gossypium hirsutum
Gohir.A09G000700 Gossypium hirsutum
Gohir.D07G239600 Gossypium hirsutum
Gohir.D09G000600 Gossypium hirsutum
Gorai.001G275700 Gossypium raimondii
Gorai.006G000400 Gossypium raimondii
GSVIVG01004941001 Vitis vinifera
GSVIVG01023985001 Vitis vinifera
GSVIVG01032996001 Vitis vinifera
GSVIVG01038492001 Vitis vinifera
HanXRQChr02g0036771 Helianthus annuus
HanXRQChr06g0169941 Helianthus annuus
HanXRQChr06g0175691 Helianthus annuus
HanXRQChr07g0198021 Helianthus annuus
HanXRQChr15g0470011 Helianthus annuus
HanXRQChr16g0511491 Helianthus annuus
HanXRQChr17g0550991 Helianthus annuus
Haze_12490 Corylus avellana
Haze_14942 Corylus avellana
Hma1.2p1_0421F.1_g149980 Hydrangea macrophylla
Hma1.2p1_0868F.1_g230550 Hydrangea macrophylla
HPP92_001934 Vanilla planifolia
HPP92_023030 Vanilla planifolia
Hund06129 Selenicereus undatus
Lalb_Chr02g0156831 Lupinus albus
Lalb_Chr06g0173811 Lupinus albus
Lalb_Chr06g0173821 Lupinus albus
Lalb_Chr22g0359951 Lupinus albus
Lj1g0018728 Lotus japonicus
Lj2g0001081 Lotus japonicus
Lj7A616T60 Lonicera japonica
Lsat_1_v5_gn_0_22641 Lactuca sativa
Lsat_1_v5_gn_2_94981 Lactuca sativa
Manes.11G077200 Manihot esculenta
Mapoly0125s0039 Marchantia polymorpha
MBI07_g07328_MAGBIO Magnolia biondii
MBI07_g07329_MAGBIO Magnolia biondii
MBI07_g44725_MAGBIO Magnolia biondii
MBI07_g44726_MAGBIO Magnolia biondii
MCO01G027 Micromonas commoda
MD09G1003700 Malus domestica
MD16G1129600 Malus domestica
MD17G1007300 Malus domestica
Medtr6g033260 Medicago truncatula
Medtr7g083920 Medicago truncatula
MELO3C005112.2 Cucumis melo
Migut.K01067 Erythranthe guttata
Migut.K01483 Erythranthe guttata
MSTRG.3041 Avicennia marina
MSTRG.462 Avicennia marina
Nitab4.5_0000198g0070 Nicotiana tabacum
Nitab4.5_0000640g0090 Nicotiana tabacum
Nn3g16296 Nelumbo nucifera
Nn4g22159 Nelumbo nucifera
Oeu003420.2 Olea europaea
Oeu035382.1 Olea europaea
Os01g0927900 Oryza sativa ssp. japonica
Os03g0850400 Oryza sativa ssp. japonica
Os07g0300900 Oryza sativa ssp. japonica
Peaxi162Scf00275g00216 Petunia axillaris
Peaxi162Scf00937g00028 Petunia axillaris
PGR142G0536 Punica granatum
PGSC0003DMG400022782 Solanum tuberosum
Phvul.004G070100 Phaseolus vulgaris
Potri.002G236800 Populus trichocarpa
Potri.004G180600 Populus trichocarpa
Potri.014G145700 Populus trichocarpa
Pp3c21_360 Physcomitrium patens
Pp3c22_2050 Physcomitrium patens
PRCOL_00002438 Prasinoderma coloniale
Prupe.1G216900 Prunus persica
Prupe.3G312900 Prunus persica
Psat1g015000 Pisum sativum
Psat3g093880 Pisum sativum
PSO017G6935 Papaver somniferum
PSO478G3921 Papaver somniferum
QL02p069786 Quercus lobata
QL03p049700 Quercus lobata
RcHm_v2.0_Chr2g0111741 Rosa chinensis
RcHm_v2.0_Chr2g0145991 Rosa chinensis
RcHm_v2.0_Chr2g0176441 Rosa chinensis
RcHm_v2.0_Chr4g0429031 Rosa chinensis
RcHm_v2.0_Chr7g0214601 Rosa chinensis
Rhsim08G0039600 Rhododendron simsii
Rhsim12G0018000 Rhododendron simsii
Sabra02G0180400 Salix brachista
Sabra14G0109600 Salix brachista
SalBow2G1535 Salvia bowleyana
SalBow7G3691 Salvia bowleyana
Sc19g0008560 Simmondsia chinensis
Sed0007789 Sechium edule
Sed0020339 Sechium edule
SEGI_11757 Sequoiadendron giganteum
SEGI_35603 Sequoiadendron giganteum
SEGI_41371 Sequoiadendron giganteum
SGA_v2.0_scaffold125G33751 Striga asiatica
SGA_v2.0_scaffold42G15916 Striga asiatica
SGA_v2.0_scaffold44G16950 Striga asiatica
SHI11384 Sapria himalayana
SMO356G0428 Selaginella moellendorffii
Solyc01g005240.4 Solanum lycopersicum
Sopen01g001270 Solanum pennellii
Sp3g00100 Schrenkiella parvula
Sp6g29940 Schrenkiella parvula
Sp6g30710 Schrenkiella parvula
TAR371G0384 Trochodendron aralioides
TAR629G2066 Trochodendron aralioides
THA.LOC104807352 Tarenaya hassleriana
THA.LOC104825579 Tarenaya hassleriana
Thecc.02G194200 Theobroma cacao
Thecc.04G046800 Theobroma cacao
Thhalv10013112m.g Eutrema salsugineum
Thhalv10013157m.g Eutrema salsugineum
Thhalv10020441m.g Eutrema salsugineum
Thhalv10024044m.g Eutrema salsugineum
TPR.G17455 Trifolium pratense
TPR.G17482 Trifolium pratense
TPR.G36674 Trifolium pratense
TWI34G1436 Tripterygium wilfordii
TWI60G0345 Tripterygium wilfordii
unitig_0.g2408 Utricularia gibba
unitig_52.g17688 Utricularia gibba
vmacro01026 Vaccinium macrocarpon
vmacro18375 Vaccinium macrocarpon
vmacro18376 Vaccinium macrocarpon
VMungo0464G1971 Vigna mungo
Zm00001eb064530 Zea mays
Zm00001eb094670 Zea mays
Zm00001eb142510 Zea mays
Zm00001eb145010 Zea mays
Zm00001eb257150 Zea mays
Zm00001eb280160 Zea mays
Zm00001eb299320 Zea mays

User provided reference genes

Program Settings