Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p08270 Brassica napus
A03p12970 Brassica napus
A03p59330 Brassica napus
A10p14450 Brassica napus
A10p26920 Brassica napus
Aa31LG3G16440 Aethionema arabicum
AL7G22340 Arabidopsis lyrata
AL8G33050 Arabidopsis lyrata
Aqoxy7G02885 Aquilegia oxysepala
AT4G29905 Arabidopsis thaliana
AT5G10695 Arabidopsis thaliana
AT5G57123 Arabidopsis thaliana
ATR0580G016 Amborella trichopoda
BcaB01g04445 Brassica carinata
BcaB03g12624 Brassica carinata
BcaB05g22320 Brassica carinata
BcaB08g36001 Brassica carinata
BcaC01g01200 Brassica carinata
BcaC01g06467 Brassica carinata
BcaC01g06468 Brassica carinata
BcaC04g20009 Brassica carinata
BcaC09g51768 Brassica carinata
BcaC09g52196 Brassica carinata
BcaNung00501 Brassica carinata
BcaNung05127 Brassica carinata
BolC1t00918H Brassica oleracea
BolC2t07584H Brassica oleracea
BolC3t13955H Brassica oleracea
BolC3t21213H Brassica oleracea
BolC7t46204H Brassica oleracea
BolC9t57733H Brassica oleracea
BolC9t59431H Brassica oleracea
BraA01t00772Z Brassica rapa
BraA03t10605Z Brassica rapa
BraA03t14990Z Brassica rapa
BraA10t43536Z Brassica rapa
BraA10t44743Z Brassica rapa
C01p09290 Brassica napus
C02p14570 Brassica napus
C03p15140 Brassica napus
C03p89030 Brassica napus
C07p57350 Brassica napus
C09p48860 Brassica napus
C09p66110 Brassica napus
CAN.G1185.1 Capsicum annuum
CAN.G809.78 Capsicum annuum
CAN.G837.3 Capsicum annuum
CANSAT35G1850 Cannabis sativa
CANSAT78G1832 Cannabis sativa
CARHR202640 Cardamine hirsuta
CARHR237810 Cardamine hirsuta
CARHR270900 Cardamine hirsuta
Carub.0006s0916 Capsella rubella
Carub.0007s1074 Capsella rubella
Carub.0008s1763 Capsella rubella
Ca_21261_v3 Cicer arietinum L.
Cc01_g10000 Coffea canephora
Cfa013278 Carpinus fangiana
Cfa013463 Carpinus fangiana
Cfa020956 Carpinus fangiana
Ciclev10010727m.g Citrus clementina
Ciclev10026904m.g Citrus clementina
CiPaw.01G088700 Carya illinoinensis
CiPaw.07G198400 Carya illinoinensis
CiPaw.07G212100 Carya illinoinensis
CiPaw.08G020200 Carya illinoinensis
CiPaw.08G031900 Carya illinoinensis
ClCG06G013690 Citrullus lanatus
ClCG11G011590 Citrullus lanatus
COL.COLO4_19026 Corchorus olitorius
Cpa.g.sc23.21 Carica papaya
CsaV3_1G031970 Cucumis sativus L.
CSS0001650 Camellia sinensis var. sinensis
CSS0015542 Camellia sinensis var. sinensis
CSS0024590 Camellia sinensis var. sinensis
CSS0027476 Camellia sinensis var. sinensis
CSS0034315 Camellia sinensis var. sinensis
DCAR_018016 Daucus carota
DCAR_018017 Daucus carota
Duzib150G0922 Durio zibethinus
Duzib168G0124 Durio zibethinus
Duzib187G1568 Durio zibethinus
Eucgr.C00097 Eucalyptus grandis
Eucgr.C02014 Eucalyptus grandis
Eucgr.C02015 Eucalyptus grandis
Eucgr.C02016 Eucalyptus grandis
Eucgr.F04019 Eucalyptus grandis
Eucgr.J02702 Eucalyptus grandis
FAN03G0239 Fragaria x ananassa
FAN07G0994 Fragaria x ananassa
FAN12G1034 Fragaria x ananassa
FAN15G1121 Fragaria x ananassa
FAN17G2104 Fragaria x ananassa
FvH4_4g07010 Fragaria vesca
FvH4_5g28071 Fragaria vesca
FvH4_6g30441 Fragaria vesca
Glyma.04G075800 Glycine max
Glyma.06G077000 Glycine max
Glyma.09G060700 Glycine max
Glyma.13G101500 Glycine max
Glyma.14G134900 Glycine max
Glyma.15G167300 Glycine max
Glyma.17G058100 Glycine max
Glyma.17G197800 Glycine max
Gohir.A03G021466 Gossypium hirsutum
Gohir.A05G001500 Gossypium hirsutum
Gohir.A05G063800 Gossypium hirsutum
Gohir.A05G064000 Gossypium hirsutum
Gohir.D03G147300 Gossypium hirsutum
Gohir.D05G001800 Gossypium hirsutum
Gohir.D05G066400 Gossypium hirsutum
Gohir.D05G066600 Gossypium hirsutum
Gorai.003G154800 Gossypium raimondii
Gorai.009G001700 Gossypium raimondii
Gorai.009G067200 Gossypium raimondii
Gorai.009G067400 Gossypium raimondii
GSVIVG01029639001 Vitis vinifera
HanXRQChr10g0308951 Helianthus annuus
HanXRQChr12g0358471 Helianthus annuus
HanXRQChr17g0538041 Helianthus annuus
Haze_21753 Corylus avellana
Haze_22042 Corylus avellana
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla
HPP92_000249 Vanilla planifolia
HPP92_017129 Vanilla planifolia
Lalb_Chr07g0180721 Lupinus albus
Lalb_Chr08g0231961 Lupinus albus
Lalb_Chr08g0243521 Lupinus albus
Lalb_Chr11g0074711 Lupinus albus
Lalb_Chr12g0199661 Lupinus albus
Lalb_Chr13g0299861 Lupinus albus
Lalb_Chr23g0276751 Lupinus albus
Lj1g0023199 Lotus japonicus
Lj4g0026496 Lotus japonicus
Lj6g0016516 Lotus japonicus
Lsat_1_v5_gn_3_19520 Lactuca sativa
Lsat_1_v5_gn_4_26460 Lactuca sativa
Lsat_1_v5_gn_4_26480 Lactuca sativa
Lsat_1_v5_gn_5_83800 Lactuca sativa
Manes.03G079400 Manihot esculenta
Manes.04G056300 Manihot esculenta
Manes.06G017900 Manihot esculenta
Manes.06G018000 Manihot esculenta
Manes.06G018100 Manihot esculenta
Manes.09G005702 Manihot esculenta
Manes.14G162900 Manihot esculenta
Manes.15G098500 Manihot esculenta
MBI16_g36963_MAGBIO Magnolia biondii
MD09G1160500 Malus domestica
MD13G1240400 Malus domestica
MD15G1107300 Malus domestica
MD16G1246800 Malus domestica
MD17G1146300 Malus domestica
Medtr2g038220 Medicago truncatula
Medtr3g108890 Medicago truncatula
Medtr4g127190 Medicago truncatula
Medtr4g127200 Medicago truncatula
MELO3C003964.2 Cucumis melo
MELO3C011187.2 Cucumis melo
MELO3C017419.2 Cucumis melo
Migut.I01181 Erythranthe guttata
Migut.J00786 Erythranthe guttata
Migut.J00787 Erythranthe guttata
Migut.L01875 Erythranthe guttata
Nitab4.5_0000028g0480 Nicotiana tabacum
Nitab4.5_0000584g0040 Nicotiana tabacum
Nitab4.5_0006188g0010 Nicotiana tabacum
Nitab4.5_0007857g0010 Nicotiana tabacum
Nn6g33479 Nelumbo nucifera
Nn6g33480 Nelumbo nucifera
Nn8g40687 Nelumbo nucifera
Nn8g40690 Nelumbo nucifera
Nn8g40694 Nelumbo nucifera
Oeu012391.1 Olea europaea
Os04g0606200 Oryza sativa ssp. japonica
Os06g0660400 Oryza sativa ssp. japonica
Os08g0230600 Oryza sativa ssp. japonica
Peaxi162Scf00046g00230 Petunia axillaris
Peaxi162Scf00046g00231 Petunia axillaris
Peaxi162Scf00784g00034 Petunia axillaris
PGR102G1539 Punica granatum
PGR142G4130 Punica granatum
PGSC0003DMG400021028 Solanum tuberosum
PGSC0003DMG400021029 Solanum tuberosum
Phvul.001G059600 Phaseolus vulgaris
Phvul.003G140426 Phaseolus vulgaris
Phvul.009G101600 Phaseolus vulgaris
Phvul.009G234900 Phaseolus vulgaris
Potri.006G073400 Populus trichocarpa
Potri.008G007800 Populus trichocarpa
Potri.008G007932 Populus trichocarpa
Potri.010G251000 Populus trichocarpa
Potri.018G007300 Populus trichocarpa
Potri.018G140500 Populus trichocarpa
Prupe.1G073400 Prunus persica
Prupe.1G459600 Prunus persica
Prupe.3G019100 Prunus persica
PSO063G0977 Papaver somniferum
PSO063G3231 Papaver somniferum
PSO063G5619 Papaver somniferum
PSO170G0913 Papaver somniferum
PSO170G3710 Papaver somniferum
QL02p047015 Quercus lobata
QL05p082346 Quercus lobata
QL12p025213 Quercus lobata
RcHm_v2.0_Chr2g0149751 Rosa chinensis
RcHm_v2.0_Chr4g0399141 Rosa chinensis
RcHm_v2.0_Chr6g0305041 Rosa chinensis
SalBow4G0971 Salvia bowleyana
SalBow5G0103 Salvia bowleyana
SalBow5G3358 Salvia bowleyana
Sc09g0010140 Simmondsia chinensis
Sed0003600 Sechium edule
Sed0006164 Sechium edule
Sed0006590 Sechium edule
Sed0007605 Sechium edule
Sed0013186 Sechium edule
Sed0015933 Sechium edule
Solyc02g081560.1 Solanum lycopersicum
Solyc07g008430.2 Solanum lycopersicum
Sopen07g004320 Solanum pennellii
Sopen07g004330 Solanum pennellii
Sopen07g004350 Solanum pennellii
Sp7g27720 Schrenkiella parvula
THA.LOC104803960 Tarenaya hassleriana
THA.LOC104811766 Tarenaya hassleriana
THA.LOC104813502 Tarenaya hassleriana
THA.LOC104814646 Tarenaya hassleriana
THA.LOC109116734 Tarenaya hassleriana
Thecc.09G007700 Theobroma cacao
Thecc.09G007900 Theobroma cacao
Thecc.09G191000 Theobroma cacao
Thhalv10015218m.g Eutrema salsugineum
Thhalv10016058m.g Eutrema salsugineum
TPR.G12466 Trifolium pratense
TPR.G5370 Trifolium pratense
TPR.G5389 Trifolium pratense
TPR.G7055 Trifolium pratense
TWI31G1116 Tripterygium wilfordii
TWI36G0848 Tripterygium wilfordii
TWI75G0683 Tripterygium wilfordii
unitig_578.g16059 Utricularia gibba
unitig_699.g19407 Utricularia gibba
Zm00001eb071510 Zea mays
Zm00001eb071530 Zea mays
Zm00001eb181190 Zea mays
Zm00001eb389240 Zea mays
Zm00001eb430460 Zea mays

User provided reference genes

Program Settings