Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p37120 Brassica napus
A05p37800 Brassica napus
A09p33760 Brassica napus
Aa31LG2G13540 Aethionema arabicum
Aa31LG3G4930 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3291 Anthoceros agrestis
Actinidia03392 Actinidia chinensis
Actinidia05404 Actinidia chinensis
AL1G46600 Arabidopsis lyrata
AL3G23080 Arabidopsis lyrata
Aqoxy2G01073 Aquilegia oxysepala
Aqoxy2G03677 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7R726S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.85A8RG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GJ8TLU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H3B4BB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J0XAHM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JLT3U8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N5497M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R1RU8V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RE2B1L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RT1TXA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TBKP5T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U8BMWT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UY4ZNB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VZCU3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WMG88L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y3QM7F Arachis hypogaea
AT1G32410 Arabidopsis thaliana
AT3G11530 Arabidopsis thaliana
ATR0737G168 Amborella trichopoda
ATR0820G283 Amborella trichopoda
Atru.chr6.1772 Acer truncatum
Atru.chr8.1450 Acer truncatum
AUR62006224 Chenopodium quinoa
AUR62007232 Chenopodium quinoa
AUR62018768 Chenopodium quinoa
AUR62036989 Chenopodium quinoa
BcaB04g18646 Brassica carinata
BcaB06g25611 Brassica carinata
BcaB07g32925 Brassica carinata
BcaC01g04108 Brassica carinata
BcaC05g27279 Brassica carinata
BcaC05g29359 Brassica carinata
BolC2t09501H Brassica oleracea
BolC3t16759H Brassica oleracea
BolC5t31915H Brassica oleracea
BolC5t34309H Brassica oleracea
BraA03t12874Z Brassica rapa
BraA05t22575Z Brassica rapa
BraA09t38925Z Brassica rapa
C03p44990 Brassica napus
C05p31870 Brassica napus
C05p56420 Brassica napus
C08p01790 Brassica napus
CAN.G397.86 Capsicum annuum
CAN.G799.16 Capsicum annuum
CANSAT64G1419 Cannabis sativa
CANSAT64G2573 Cannabis sativa
CARHR031840 Cardamine hirsuta
CARHR031860 Cardamine hirsuta
CARHR086080 Cardamine hirsuta
Carub.0001s3081 Capsella rubella
Carub.0003s1085 Capsella rubella
Ca_22044_v3 Cicer arietinum L.
Ca_24633_v3 Cicer arietinum L.
CBR_g33919 Chara braunii
Cc00_g31300 Coffea canephora
Cc00_g31800 Coffea canephora
Cc06_g06150 Coffea canephora
Cc08_g01960 Coffea canephora
Cc08_g02000 Coffea canephora
Cc08_g02060 Coffea canephora
CDE06G2296 Ceratophyllum demersum
CDE07G0608 Ceratophyllum demersum
Cfa012387 Carpinus fangiana
Ciclev10012797m.g Citrus clementina
Ciclev10033036m.g Citrus clementina
CiPaw.09G016900 Carya illinoinensis
CiPaw.10G012200 Carya illinoinensis
CiPaw.11G087600 Carya illinoinensis
ClCG04G010200 Citrullus lanatus
ClCG09G012370 Citrullus lanatus
ClCG10G001910 Citrullus lanatus
ClCG10G001920 Citrullus lanatus
COL.COLO4_17109 Corchorus olitorius
COL.COLO4_29675 Corchorus olitorius
Cpa.g.sc6.410 Carica papaya
Cre12.g491150 Chlamydomonas reinhardtii
CsaV3_3G002050 Cucumis sativus L.
CsaV3_6G040840 Cucumis sativus L.
CSS0017717 Camellia sinensis var. sinensis
CSS0022491 Camellia sinensis var. sinensis
CSS0038891 Camellia sinensis var. sinensis
CSS0038941 Camellia sinensis var. sinensis
CSS0045954 Camellia sinensis var. sinensis
DCAR_009169 Daucus carota
DCAR_024977 Daucus carota
Dinv21170 Davidia involucrata
Dinv25185 Davidia involucrata
Dinv28917 Davidia involucrata
Dinv31717 Davidia involucrata
Duzib068G0741 Durio zibethinus
Duzib084G1029 Durio zibethinus
Duzib093G2069 Durio zibethinus
Duzib106G0297 Durio zibethinus
Duzib205G0838 Durio zibethinus
ECA233G0346 Erigeron canadensis
ECA248G3208 Erigeron canadensis
EL10Ac5g12194 Beta vulgaris
EL10Ac7g16876 Beta vulgaris
Eucgr.A02634 Eucalyptus grandis
Eucgr.E00311 Eucalyptus grandis
FAN02G1013 Fragaria x ananassa
FAN04G1510 Fragaria x ananassa
FAN05G1241 Fragaria x ananassa
FAN05G1962 Fragaria x ananassa
FAN13G2331 Fragaria x ananassa
FAN14G0196 Fragaria x ananassa
FvH4_5g21150 Fragaria vesca
FvH4_6g19440 Fragaria vesca
Glyma.01G201100 Glycine max
Glyma.03G198000 Glycine max
Glyma.11G041100 Glycine max
Glyma.17G152500 Glycine max
Glyma.19G195900 Glycine max
Gohir.A03G002700 Gossypium hirsutum
Gohir.A08G159500 Gossypium hirsutum
Gohir.A09G141300 Gossypium hirsutum
Gohir.D03G169600 Gossypium hirsutum
Gohir.D08G179900 Gossypium hirsutum
Gohir.D09G133400 Gossypium hirsutum
Gorai.003G179900 Gossypium raimondii
Gorai.004G188400 Gossypium raimondii
Gorai.006G152900 Gossypium raimondii
GSVIVG01013231001 Vitis vinifera
GSVIVG01033888001 Vitis vinifera
HanXRQChr02g0042201 Helianthus annuus
HanXRQChr08g0227951 Helianthus annuus
HanXRQChr13g0390091 Helianthus annuus
Haze_08296 Corylus avellana
Haze_19649 Corylus avellana
Hma1.2p1_0414F.1_g147750 Hydrangea macrophylla
HPP92_025678 Vanilla planifolia
Hund14429 Selenicereus undatus
Lalb_Chr01g0017961 Lupinus albus
Lalb_Chr16g0379221 Lupinus albus
Lalb_Chr25g0288221 Lupinus albus
Lj1g0015508 Lotus japonicus
Lj2A247T83 Lonicera japonica
Lj2g0023193 Lotus japonicus
Lj4g0007442 Lotus japonicus
Lsat_1_v5_gn_5_165520 Lactuca sativa
Lsat_1_v5_gn_6_67201 Lactuca sativa
Manes.09G052500 Manihot esculenta
Manes.17G019200 Manihot esculenta
Mapoly0020s0092 Marchantia polymorpha
MBI17_g38052_MAGBIO Magnolia biondii
MD06G1040700 Malus domestica
MD12G1030600 Malus domestica
MD14G1031100 Malus domestica
MD16G1269000 Malus domestica
Medtr5g013980 Medicago truncatula
Medtr7g105200 Medicago truncatula
MELO3C013876.2 Cucumis melo
MELO3C024562.2 Cucumis melo
Migut.A00007 Erythranthe guttata
Migut.H02289 Erythranthe guttata
MSTRG.23380 Avicennia marina
MSTRG.26030 Avicennia marina
Nitab4.5_0000573g0150 Nicotiana tabacum
Nitab4.5_0002055g0130 Nicotiana tabacum
Nitab4.5_0006693g0040 Nicotiana tabacum
Nn1g00611 Nelumbo nucifera
Nn6g34818 Nelumbo nucifera
Oeu000757.1 Olea europaea
Oeu017694.1 Olea europaea
Os01g0966500 Oryza sativa ssp. japonica
Os02g0803400 Oryza sativa ssp. japonica
Peaxi162Scf00069g00043 Petunia axillaris
Peaxi162Scf00084g00923 Petunia axillaris
Peaxi162Scf00772g00022 Petunia axillaris
PGR004G1482 Punica granatum
PGR042G2318 Punica granatum
PGSC0003DMG400008861 Solanum tuberosum
PGSC0003DMG400024225 Solanum tuberosum
Phvul.001G192100 Phaseolus vulgaris
Phvul.002G004600 Phaseolus vulgaris
Phvul.003G228400 Phaseolus vulgaris
Potri.001G146600 Populus trichocarpa
Potri.003G087500 Populus trichocarpa
Potri.006G209100 Populus trichocarpa
Pp3c16_810 Physcomitrium patens
Pp3c6_13440 Physcomitrium patens
PRCOL_00001788 Prasinoderma coloniale
Prupe.5G047000 Prunus persica
Prupe.7G101900 Prunus persica
Psat2g174680 Pisum sativum
Psat3g031720 Pisum sativum
PSO675G6125 Papaver somniferum
PSO717G0106 Papaver somniferum
PSO801G0101 Papaver somniferum
QL07p038218 Quercus lobata
QL12p007100 Quercus lobata
RcHm_v2.0_Chr3g0474751 Rosa chinensis
RcHm_v2.0_Chr7g0208281 Rosa chinensis
Rhsim01G0119500 Rhododendron simsii
Rhsim04G0131300 Rhododendron simsii
Sabra01G0115300 Salix brachista
Sabra03G0057400 Salix brachista
SalBow3G3077 Salvia bowleyana
SalBow3G3691 Salvia bowleyana
SalBow4G1827 Salvia bowleyana
Sc01g0007750 Simmondsia chinensis
Sc20g0006390 Simmondsia chinensis
Sed0008779 Sechium edule
Sed0023096 Sechium edule
SEGI_37532 Sequoiadendron giganteum
SGA_v2.0_scaffold64G22004 Striga asiatica
SMO340G0251 Selaginella moellendorffii
Solyc08g077260.3 Solanum lycopersicum
Solyc09g010170.3 Solanum lycopersicum
Sopen08g025840 Solanum pennellii
Sopen09g004910 Solanum pennellii
Sp1g28480 Schrenkiella parvula
Sp3g09770 Schrenkiella parvula
TAR636G3059 Trochodendron aralioides
THA.LOC104814430 Tarenaya hassleriana
THA.LOC104816599 Tarenaya hassleriana
Thecc.03G233900 Theobroma cacao
Thecc.05G095100 Theobroma cacao
Thhalv10009570m.g Eutrema salsugineum
Thhalv10021777m.g Eutrema salsugineum
TPR.G23317 Trifolium pratense
TPR.G7135 Trifolium pratense
TWI15G0115 Tripterygium wilfordii
TWI74G1073 Tripterygium wilfordii
TWI77G0806 Tripterygium wilfordii
TWI81G0774 Tripterygium wilfordii
unitig_32.g10884 Utricularia gibba
unitig_736.g22589 Utricularia gibba
unitig_748.g8269 Utricularia gibba
vmacro08865 Vaccinium macrocarpon
VMungo1215G1429 Vigna mungo
VMungo1215G2547 Vigna mungo
VMungo1383G0303 Vigna mungo
Zm00001eb140070 Zea mays
Zm00001eb192110 Zea mays
Zm00001eb362350 Zea mays

User provided reference genes

Program Settings