Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p24840 Brassica napus
A05p04780 Brassica napus
Aa31LG1G26180 Aethionema arabicum
Aa31LG5G17520 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.859 Anthoceros agrestis
Actinidia02536 Actinidia chinensis
Actinidia05788 Actinidia chinensis
Actinidia30952 Actinidia chinensis
Ah.07g203570 Amaranthus hybridus
AL3G18130 Arabidopsis lyrata
AL4G43670 Arabidopsis lyrata
Aqoxy2G02502 Aquilegia oxysepala
Aqoxy3G02558 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.09HRLI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JDGP5U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PPN3ZF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S2VHS4 Arachis hypogaea
AT2G44640 Arabidopsis thaliana
AT3G06960 Arabidopsis thaliana
ATR0796G162 Amborella trichopoda
ATR1136G174 Amborella trichopoda
Atru.chr4.3166 Acer truncatum
Atru.chr5.43 Acer truncatum
Atru.chr5.73 Acer truncatum
Atru.chr5.74 Acer truncatum
AUR62002542 Chenopodium quinoa
AUR62013789 Chenopodium quinoa
AUR62023367 Chenopodium quinoa
AUR62029961 Chenopodium quinoa
BcaB01g03301 Brassica carinata
BcaB01g03302 Brassica carinata
BcaB01g03303 Brassica carinata
BcaB01g03304 Brassica carinata
BcaB02g08839 Brassica carinata
BcaB04g21302 Brassica carinata
BcaC01g05204 Brassica carinata
BcaC02g12288 Brassica carinata
BcaC09g47928 Brassica carinata
BNapus_Darmor_BZH_scaffold_117p00170 Brassica napus
BolC1t05577H Brassica oleracea
BolC3t15311H Brassica oleracea
BolC4t22189H Brassica oleracea
BraA01t04406Z Brassica rapa
BraA03t11691Z Brassica rapa
BraA05t19454Z Brassica rapa
C03p29620 Brassica napus
C04p05590 Brassica napus
CAN.G756.17 Capsicum annuum
CANSAT25G0893 Cannabis sativa
CANSAT64G0103 Cannabis sativa
CARHR081560 Cardamine hirsuta
CARHR139850 Cardamine hirsuta
Carub.0003s0648 Capsella rubella
Carub.0004s2719 Capsella rubella
Ca_01993_v3 Cicer arietinum L.
Ca_23142_v3 Cicer arietinum L.
Ca_25152_v3 Cicer arietinum L.
CBR_g3748 Chara braunii
Cc02_g25620 Coffea canephora
Cc02_g25630 Coffea canephora
Cc08_g04620 Coffea canephora
CDE04G2107 Ceratophyllum demersum
CDE09G0451 Ceratophyllum demersum
CDE09G1356 Ceratophyllum demersum
Cfa011023 Carpinus fangiana
Cfa015736 Carpinus fangiana
Ciclev10004947m.g Citrus clementina
Ciclev10019957m.g Citrus clementina
CiPaw.01G128600 Carya illinoinensis
CiPaw.02G069000 Carya illinoinensis
CiPaw.14G016800 Carya illinoinensis
ClCG05G002880 Citrullus lanatus
ClCG05G002890 Citrullus lanatus
ClCG06G004160 Citrullus lanatus
COL.COLO4_12352 Corchorus olitorius
COL.COLO4_34510 Corchorus olitorius
Cpa.g.sc146.17 Carica papaya
Cpa.g.sc52.70 Carica papaya
Cre02.g082450 Chlamydomonas reinhardtii
CsaV3_3G010430 Cucumis sativus L.
CsaV3_6G000270 Cucumis sativus L.
CSS0006845 Camellia sinensis var. sinensis
CSS0009152 Camellia sinensis var. sinensis
CSS0011590 Camellia sinensis var. sinensis
CSS0020021 Camellia sinensis var. sinensis
CSS0021924 Camellia sinensis var. sinensis
CSS0034121 Camellia sinensis var. sinensis
CSS0043922 Camellia sinensis var. sinensis
DCAR_023412 Daucus carota
DCAR_025025 Daucus carota
Dinv29500 Davidia involucrata
Dinv44022 Davidia involucrata
Duzib138G1245 Durio zibethinus
Duzib212G0204 Durio zibethinus
ECA233G4875 Erigeron canadensis
ECA236G0339 Erigeron canadensis
EL10Ac1g00714 Beta vulgaris
EL10Ac3g06238 Beta vulgaris
Eucgr.B03964 Eucalyptus grandis
Eucgr.D01183 Eucalyptus grandis
FAN01G2864 Fragaria x ananassa
FAN03G2444 Fragaria x ananassa
FAN06G1321 Fragaria x ananassa
FAN06G3283 Fragaria x ananassa
FAN07G2694 Fragaria x ananassa
FAN10G0308 Fragaria x ananassa
FAN10G2761 Fragaria x ananassa
FAN10G3329 Fragaria x ananassa
FAN10G3358 Fragaria x ananassa
FAN12G0637 Fragaria x ananassa
FAN17G1618 Fragaria x ananassa
FvH4_4g21580 Fragaria vesca
FvH4_7g08780 Fragaria vesca
FvH4_7g08800 Fragaria vesca
Glyma.03G103500 Glycine max
Glyma.07G120500 Glycine max
Glyma.09G051500 Glycine max
Glyma.15G157800 Glycine max
Gohir.A06G180900 Gossypium hirsutum
Gohir.A08G056150 Gossypium hirsutum
Gohir.A12G099200 Gossypium hirsutum
Gohir.A12G148900 Gossypium hirsutum
Gohir.D06G187700 Gossypium hirsutum
Gohir.D08G065500 Gossypium hirsutum
Gohir.D12G102200 Gossypium hirsutum
Gorai.004G067800 Gossypium raimondii
Gorai.008G111400 Gossypium raimondii
Gorai.010G220000 Gossypium raimondii
GSVIVG01017694001 Vitis vinifera
GSVIVG01018374001 Vitis vinifera
HanXRQChr01g0006321 Helianthus annuus
HanXRQChr01g0012481 Helianthus annuus
HanXRQChr06g0168271 Helianthus annuus
Haze_00760 Corylus avellana
Haze_02902 Corylus avellana
Hma1.2p1_2234F.1_g317660 Hydrangea macrophylla
HPP92_001946 Vanilla planifolia
HPP92_022441 Vanilla planifolia
Hund12259 Selenicereus undatus
Hund27419 Selenicereus undatus
Lalb_Chr07g0195181 Lupinus albus
Lalb_Chr18g0052121 Lupinus albus
Lj3g0001773 Lotus japonicus
Lj6C702G8 Lonicera japonica
Lj6g0024524 Lotus japonicus
Lj9A550T68 Lonicera japonica
Lsat_1_v5_gn_1_40001 Lactuca sativa
Lsat_1_v5_gn_7_11860 Lactuca sativa
Manes.03G212100 Manihot esculenta
Manes.05G058500 Manihot esculenta
Mapoly0001s0442 Marchantia polymorpha
MBI04_g03343_MAGBIO Magnolia biondii
MBI18_g10383_MAGBIO Magnolia biondii
MCO11G435 Micromonas commoda
MD02G1224900 Malus domestica
MD07G1088800 Malus domestica
MD07G1089000 Malus domestica
MD07G1089100 Malus domestica
MD07G1089700 Malus domestica
MD07G1089800 Malus domestica
MD07G1089900 Malus domestica
MD07G1090000 Malus domestica
MD07G1090600 Malus domestica
MD13G1140500 Malus domestica
MD16G1135300 Malus domestica
Medtr2g035830 Medicago truncatula
Medtr4g050530 Medicago truncatula
Medtr8g009290 Medicago truncatula
MELO3C006267.2 Cucumis melo
MELO3C021227.2 Cucumis melo
Migut.C00319 Erythranthe guttata
Migut.G00902 Erythranthe guttata
Migut.N01715 Erythranthe guttata
MSTRG.20663 Avicennia marina
MSTRG.3837 Avicennia marina
MSTRG.4960 Avicennia marina
Nitab4.5_0004088g0050 Nicotiana tabacum
Nitab4.5_0005064g0050 Nicotiana tabacum
Nn1g00665 Nelumbo nucifera
Nn3g21931 Nelumbo nucifera
Oeu002201.1 Olea europaea
Oeu002904.1 Olea europaea
Oeu022710.2 Olea europaea
Os01g0251000 Oryza sativa ssp. japonica
Peaxi162Scf00126g01020 Petunia axillaris
Peaxi162Scf00126g01021 Petunia axillaris
Peaxi162Scf00745g00016 Petunia axillaris
PGR004G2859 Punica granatum
PGSC0003DMG401001686 Solanum tuberosum
PGSC0003DMG401019999 Solanum tuberosum
PGSC0003DMG402001686 Solanum tuberosum
PGSC0003DMG402019999 Solanum tuberosum
Phvul.009G242200 Phaseolus vulgaris
Phvul.010G041600 Phaseolus vulgaris
Potri.010G002800 Populus trichocarpa
Potri.014G044200 Populus trichocarpa
Pp3c1_25400 Physcomitrium patens
Pp3c2_14649 Physcomitrium patens
PRCOL_00005378 Prasinoderma coloniale
Prupe.1G104600 Prunus persica
Prupe.2G115700 Prunus persica
Psat0s4427g0040 Pisum sativum
Psat1g149840 Pisum sativum
PSO210G1766 Papaver somniferum
PSO761G0657 Papaver somniferum
PSO782G1010 Papaver somniferum
QL04p026158 Quercus lobata
QL06p014372 Quercus lobata
RcHm_v2.0_Chr1g0344071 Rosa chinensis
RcHm_v2.0_Chr1g0344131 Rosa chinensis
RcHm_v2.0_Chr4g0427691 Rosa chinensis
Rhsim02G0072000 Rhododendron simsii
Sabra10G0002200 Salix brachista
Sabra14G0032100 Salix brachista
SalBow4G3318 Salvia bowleyana
SalBow8G2001 Salvia bowleyana
Sc02g0003270 Simmondsia chinensis
Sc13g0008040 Simmondsia chinensis
Sed0027195 Sechium edule
Sed0027284 Sechium edule
SEGI_01888 Sequoiadendron giganteum
SGA_v2.0_scaffold157G37392 Striga asiatica
SGA_v2.0_scaffold77G25255 Striga asiatica
SMO232G0048 Selaginella moellendorffii
Solyc01g057020.3 Solanum lycopersicum
Solyc01g088600.4 Solanum lycopersicum
Sopen01g021230 Solanum pennellii
Sopen01g035450 Solanum pennellii
Sp3g05910 Schrenkiella parvula
Sp4g26720 Schrenkiella parvula
TAR365G0007 Trochodendron aralioides
TAR365G0012 Trochodendron aralioides
TAR374G1576 Trochodendron aralioides
THA.LOC104817177 Tarenaya hassleriana
THA.LOC104818928 Tarenaya hassleriana
Thecc.01G402500 Theobroma cacao
Thecc.04G313600 Theobroma cacao
Thhalv10001437m.g Eutrema salsugineum
Thhalv10020620m.g Eutrema salsugineum
TPR.G17359 Trifolium pratense
TPR.G31846 Trifolium pratense
TWI14G0561 Tripterygium wilfordii
TWI73G0971 Tripterygium wilfordii
unitig_0.g29 Utricularia gibba
unitig_26.g8859 Utricularia gibba
VMungo0331G1148 Vigna mungo
VMungo1309G0165 Vigna mungo
VMungo1309G2419 Vigna mungo
Zm00001eb127450 Zea mays

User provided reference genes

Program Settings