Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p23960 Brassica napus
A08p11120 Brassica napus
A09p50930 Brassica napus
Aa31LG10G12890 Aethionema arabicum
Aa31LG9G2840 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1036 Anthoceros agrestis
Actinidia02485 Actinidia chinensis
Actinidia31881 Actinidia chinensis
Actinidia40069 Actinidia chinensis
Ah.02g111780 Amaranthus hybridus
AL5G39870 Arabidopsis lyrata
AL7G41680 Arabidopsis lyrata
Aqoxy1G00263 Aquilegia oxysepala
Aqoxy2G01787 Aquilegia oxysepala
Aqoxy335s002 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2Q1TUP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9IC2FY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EPD2CU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FL1L3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IM1D59 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JQ3F04 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V2BS34 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VRQ9RQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XKA0JW Arachis hypogaea
AT3G58170 Arabidopsis thaliana
AT4G14455 Arabidopsis thaliana
ATR0763G011 Amborella trichopoda
ATR0789G106 Amborella trichopoda
Atru.chr4.2140 Acer truncatum
Atru.chr5.1638 Acer truncatum
AUR62002260 Chenopodium quinoa
AUR62011904 Chenopodium quinoa
AUR62015477 Chenopodium quinoa
AUR62024745 Chenopodium quinoa
BcaB02g07545 Brassica carinata
BcaB02g10835 Brassica carinata
BcaB04g18223 Brassica carinata
BcaC07g37818 Brassica carinata
BcaC07g40187 Brassica carinata
BcaC07g40269 Brassica carinata
BcaC08g44903 Brassica carinata
BolC6t37682H Brassica oleracea
BolC8t48206H Brassica oleracea
BolC8t50974H Brassica oleracea
BraA05t20598Z Brassica rapa
BraA07t30047Z Brassica rapa
BraA08t33106Z Brassica rapa
BraA09t40539Z Brassica rapa
C06p25230 Brassica napus
C08p33750 Brassica napus
CAN.G461.7 Capsicum annuum
CAN.G793.3 Capsicum annuum
CANSAT01G2421 Cannabis sativa
CARHR168540 Cardamine hirsuta
CARHR220670 Cardamine hirsuta
Carub.0005s2502 Capsella rubella
Carub.0007s2776 Capsella rubella
Ca_09696_v3 Cicer arietinum L.
CBR_g39542 Chara braunii
Cc01_g18540 Coffea canephora
Cc03_g05090 Coffea canephora
CDE02G4256 Ceratophyllum demersum
CDE05G3616 Ceratophyllum demersum
CDE05G3623 Ceratophyllum demersum
Ciclev10006204m.g Citrus clementina
Ciclev10022892m.g Citrus clementina
CiPaw.01G188200 Carya illinoinensis
CiPaw.03G261200 Carya illinoinensis
CiPaw.04G184600 Carya illinoinensis
ClCG06G006820 Citrullus lanatus
ClCG07G000890 Citrullus lanatus
COL.COLO4_05595 Corchorus olitorius
COL.COLO4_15824 Corchorus olitorius
Cpa.g.sc50.48 Carica papaya
Cre03.g198100 Chlamydomonas reinhardtii
CsaV3_3G022610 Cucumis sativus L.
CsaV3_3G023820 Cucumis sativus L.
CSS0009501 Camellia sinensis var. sinensis
CSS0010842 Camellia sinensis var. sinensis
DCAR_002337 Daucus carota
DCAR_014581 Daucus carota
Dinv22446 Davidia involucrata
Dinv29889 Davidia involucrata
Dinv34595 Davidia involucrata
Duzib052G1024 Durio zibethinus
Duzib133G0395 Durio zibethinus
Duzib138G0125 Durio zibethinus
Duzib151G1077 Durio zibethinus
Duzib212G0529 Durio zibethinus
ECA233G0123 Erigeron canadensis
ECA248G1647 Erigeron canadensis
EL10Ac3g05908 Beta vulgaris
EL10Ac5g10428 Beta vulgaris
Eucgr.B01517 Eucalyptus grandis
FAN12G0661 Fragaria x ananassa
FAN12G1241 Fragaria x ananassa
FAN15G0014 Fragaria x ananassa
FAN17G0431 Fragaria x ananassa
FAN20G3068 Fragaria x ananassa
FAN22G1101 Fragaria x ananassa
FAN24G3366 Fragaria x ananassa
FAN27G1551 Fragaria x ananassa
FvH4_2g22020 Fragaria vesca
FvH4_4g03051 Fragaria vesca
Glyma.03G161000 Glycine max
Glyma.10G008300 Glycine max
Glyma.10G034800 Glycine max
Glyma.13G121100 Glycine max
Glyma.19G162700 Glycine max
Glyma.20G087600 Glycine max
Gohir.A07G211000 Gossypium hirsutum
Gohir.A09G224600 Gossypium hirsutum
Gohir.A11G128900 Gossypium hirsutum
Gohir.D07G217000 Gossypium hirsutum
Gohir.D09G226400 Gossypium hirsutum
Gohir.D11G134700 Gossypium hirsutum
Gorai.001G251400 Gossypium raimondii
Gorai.006G248000 Gossypium raimondii
Gorai.007G144100 Gossypium raimondii
GSVIVG01028292001 Vitis vinifera
GSVIVG01029089001 Vitis vinifera
HanXRQChr01g0014261 Helianthus annuus
HanXRQChr12g0378871 Helianthus annuus
HanXRQChr12g0386211 Helianthus annuus
Haze_11332 Corylus avellana
Haze_24588 Corylus avellana
Haze_24592 Corylus avellana
Hma1.2p1_0273F.1_g109980 Hydrangea macrophylla
Hma1.2p1_0310F.1_g120760 Hydrangea macrophylla
HPP92_015824 Vanilla planifolia
Hund04544 Selenicereus undatus
Hund09586 Selenicereus undatus
Lalb_Chr03g0037081 Lupinus albus
Lalb_Chr21g0306161 Lupinus albus
Lj1g0011004 Lotus japonicus
Lj2A1155T23 Lonicera japonica
Lj6g0019280 Lotus japonicus
Lsat_1_v5_gn_5_181681 Lactuca sativa
Lsat_1_v5_gn_5_34661 Lactuca sativa
Lsat_1_v5_gn_5_72000 Lactuca sativa
Manes.01G199100 Manihot esculenta
Manes.03G167200 Manihot esculenta
Manes.05G087400 Manihot esculenta
Manes.15G038000 Manihot esculenta
Mapoly0002s0103 Marchantia polymorpha
MBI17_g17501_MAGBIO Magnolia biondii
MBI18_g20354_MAGBIO Magnolia biondii
MCO01G105 Micromonas commoda
MD05G1201200 Malus domestica
MD10G1188000 Malus domestica
MD13G1210000 Malus domestica
MD16G1212900 Malus domestica
Medtr1g044145 Medicago truncatula
Medtr1g070240 Medicago truncatula
MELO3C012982.2 Cucumis melo
MELO3C018066.2 Cucumis melo
Migut.J00939 Erythranthe guttata
Migut.L01551 Erythranthe guttata
Migut.N00252 Erythranthe guttata
Nitab4.5_0000086g0160 Nicotiana tabacum
Nitab4.5_0000326g0040 Nicotiana tabacum
Nitab4.5_0000342g0230 Nicotiana tabacum
Nitab4.5_0001327g0100 Nicotiana tabacum
Nitab4.5_0007234g0030 Nicotiana tabacum
Nitab4.5_0011666g0010 Nicotiana tabacum
Nn3g19597 Nelumbo nucifera
Nn5g27788 Nelumbo nucifera
Nn6g34823 Nelumbo nucifera
Oeu039684.1 Olea europaea
Oeu060944.2 Olea europaea
Os02g0820700 Oryza sativa ssp. japonica
Os08g0563300 Oryza sativa ssp. japonica
Peaxi162Scf00018g02019 Petunia axillaris
Peaxi162Scf00024g01616 Petunia axillaris
Peaxi162Scf00134g01212 Petunia axillaris
PGR031G1335 Punica granatum
PGR031G3610 Punica granatum
PGR048G0003 Punica granatum
PGSC0003DMG400010893 Solanum tuberosum
PGSC0003DMG400017253 Solanum tuberosum
PGSC0003DMG400031428 Solanum tuberosum
Phvul.001G158900 Phaseolus vulgaris
Phvul.007G146500 Phaseolus vulgaris
Phvul.007G195300 Phaseolus vulgaris
Phvul.007G271900 Phaseolus vulgaris
Potri.002G041500 Populus trichocarpa
Potri.005G221600 Populus trichocarpa
Potri.010G074100 Populus trichocarpa
Pp3c14_11430 Physcomitrium patens
Pp3c17_7490 Physcomitrium patens
Pp3c1_32820 Physcomitrium patens
PRCOL_00006690 Prasinoderma coloniale
Prupe.1G034500 Prunus persica
Prupe.8G227800 Prunus persica
Psat6g105920 Pisum sativum
PSO135G1068 Papaver somniferum
PSO384G1628 Papaver somniferum
PSO541G3332 Papaver somniferum
PSO675G7618 Papaver somniferum
QL06p016605 Quercus lobata
RcHm_v2.0_Chr4g0391341 Rosa chinensis
RcHm_v2.0_Chr6g0288881 Rosa chinensis
Rhsim03G0268300 Rhododendron simsii
Rhsim04G0188400 Rhododendron simsii
Sabra02G0033100 Salix brachista
Sabra05G0170500 Salix brachista
Sabra10G0034400 Salix brachista
SalBow4G0655 Salvia bowleyana
SalBow6G5688 Salvia bowleyana
Sc05g0000790 Simmondsia chinensis
Sc25g0004060 Simmondsia chinensis
Sed0002197 Sechium edule
Sed0005455 Sechium edule
SGA_v2.0_scaffold21G09479 Striga asiatica
SGA_v2.0_scaffold308G48098 Striga asiatica
SGA_v2.0_scaffold385G50445 Striga asiatica
SHI09877 Sapria himalayana
SMO117G0080 Selaginella moellendorffii
Solyc06g008520.4 Solanum lycopersicum
Solyc09g089630.3 Solanum lycopersicum
Sopen06g003290 Solanum pennellii
Sopen09g032570 Solanum pennellii
Sp5g04550 Schrenkiella parvula
Sp7g12540 Schrenkiella parvula
TAR362G0041 Trochodendron aralioides
TAR365G0069 Trochodendron aralioides
TAR542G0003 Trochodendron aralioides
TAR602G0002 Trochodendron aralioides
TAR636G1486 Trochodendron aralioides
THA.LOC104802844 Tarenaya hassleriana
THA.LOC104822099 Tarenaya hassleriana
THA.LOC104822247 Tarenaya hassleriana
Thecc.01G262700 Theobroma cacao
Thecc.04G249500 Theobroma cacao
Thhalv10006315m.g Eutrema salsugineum
Thhalv10026530m.g Eutrema salsugineum
TPR.G15862 Trifolium pratense
TPR.G27242 Trifolium pratense
TWI12G0491 Tripterygium wilfordii
TWI53G0410 Tripterygium wilfordii
TWI53G0514 Tripterygium wilfordii
TWI75G1788 Tripterygium wilfordii
unitig_8.g4276 Utricularia gibba
unitig_899.g15635 Utricularia gibba
vmacro08445 Vaccinium macrocarpon
vmacro20766 Vaccinium macrocarpon
VMungo0720G2804 Vigna mungo
Zm00001eb038830 Zea mays
Zm00001eb191140 Zea mays
Zm00001eb259160 Zea mays

User provided reference genes

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