Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p25680 Brassica napus
A05p12140 Brassica napus
A07p09600 Brassica napus
A09p35450 Brassica napus
Aa31LG5G3910 Aethionema arabicum
Aa31LG6G12060 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4310 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1937 Anthoceros agrestis
Actinidia11363 Actinidia chinensis
Ah.03g132240 Amaranthus hybridus
AL1G45080 Arabidopsis lyrata
AL4G19510 Arabidopsis lyrata
AL4G29040 Arabidopsis lyrata
Aqoxy2G00386 Aquilegia oxysepala
Aqoxy2G03724 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.25YVJA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4IN326 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EUP4KI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JFNT0M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P96IG1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VK0W6N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XI1YY4 Arachis hypogaea
AT1G30825 Arabidopsis thaliana
AT2G33385 Arabidopsis thaliana
ATR0721G170 Amborella trichopoda
ATR0736G098 Amborella trichopoda
ATR0737G018 Amborella trichopoda
Atru.chr4.1934 Acer truncatum
AUR62002182 Chenopodium quinoa
AUR62002643 Chenopodium quinoa
AUR62007725 Chenopodium quinoa
AUR62015528 Chenopodium quinoa
AUR62026563 Chenopodium quinoa
BcaB02g10556 Brassica carinata
BcaB03g13812 Brassica carinata
BcaB06g28679 Brassica carinata
BcaB07g32735 Brassica carinata
BcaC02g07833 Brassica carinata
BcaC02g11424 Brassica carinata
BcaC05g27107 Brassica carinata
BolC4t23139H Brassica oleracea
BolC4t27766H Brassica oleracea
BolC5t31722H Brassica oleracea
BolC7t41980H Brassica oleracea
BraA04t18072Z Brassica rapa
BraA05t20158Z Brassica rapa
BraA07t28755Z Brassica rapa
BraA09t39073Z Brassica rapa
C04p15710 Brassica napus
C04p62830 Brassica napus
C05p29900 Brassica napus
C07p14780 Brassica napus
CAN.G1213.3 Capsicum annuum
CAN.G220.89 Capsicum annuum
CAN.G745.4 Capsicum annuum
CANSAT35G1062 Cannabis sativa
CARHR030300 Cardamine hirsuta
CARHR127390 Cardamine hirsuta
Carub.0001s2914 Capsella rubella
Carub.0004s1501 Capsella rubella
Ca_11924_v3 Cicer arietinum L.
Ca_22537_v3 Cicer arietinum L.
CBR_g9158 Chara braunii
Cc03_g06020 Coffea canephora
Cc09_g04490 Coffea canephora
CDE10G0875 Ceratophyllum demersum
CDE10G1113 Ceratophyllum demersum
CDE11G0381 Ceratophyllum demersum
Cfa001171 Carpinus fangiana
Cfa014770 Carpinus fangiana
Cfa014772 Carpinus fangiana
Ciclev10005533m.g Citrus clementina
Ciclev10015913m.g Citrus clementina
CiPaw.01G179300 Carya illinoinensis
CiPaw.09G141200 Carya illinoinensis
ClCG01G025980 Citrullus lanatus
ClCG05G004070 Citrullus lanatus
COL.COLO4_15947 Corchorus olitorius
COL.COLO4_25012 Corchorus olitorius
Cpa.g.sc30.58 Carica papaya
Cpa.g.sc44.15 Carica papaya
Cre17.g747047 Chlamydomonas reinhardtii
Cre17.g747197 Chlamydomonas reinhardtii
CsaV3_3G011790 Cucumis sativus L.
CsaV3_6G053200 Cucumis sativus L.
CSS0002485 Camellia sinensis var. sinensis
CSS0027427 Camellia sinensis var. sinensis
DCAR_004367 Daucus carota
DCAR_007770 Daucus carota
DCAR_024283 Daucus carota
Dinv05281 Davidia involucrata
Dinv29815 Davidia involucrata
Duzib151G0425 Durio zibethinus
Duzib248G0661 Durio zibethinus
ECA248G3746 Erigeron canadensis
EL10Ac3g04954 Beta vulgaris
EL10Ac6g13754 Beta vulgaris
Eucgr.E04332 Eucalyptus grandis
Eucgr.H00135 Eucalyptus grandis
FAN11G2045 Fragaria x ananassa
FAN12G0422 Fragaria x ananassa
FAN12G2139 Fragaria x ananassa
FAN12G2354 Fragaria x ananassa
FAN12G3842 Fragaria x ananassa
FAN16G2462 Fragaria x ananassa
FAN17G1026 Fragaria x ananassa
FAN21G1338 Fragaria x ananassa
FAN22G0617 Fragaria x ananassa
FAN25G1120 Fragaria x ananassa
FvH4_3g13510 Fragaria vesca
FvH4_4g04380 Fragaria vesca
Glyma.08G264402 Glycine max
Glyma.10G136400 Glycine max
Glyma.16G094500 Glycine max
Gohir.A09G228000 Gossypium hirsutum
Gohir.A12G051200 Gossypium hirsutum
Gohir.D09G229000 Gossypium hirsutum
Gohir.D12G049400 Gossypium hirsutum
Gorai.006G251700 Gossypium raimondii
Gorai.008G052300 Gossypium raimondii
GSVIVG01011697001 Vitis vinifera
GSVIVG01027900001 Vitis vinifera
HanXRQChr01g0022911 Helianthus annuus
HanXRQChr09g0257691 Helianthus annuus
Haze_05179 Corylus avellana
Haze_11445 Corylus avellana
Hma1.2p1_0082F.1_g042610 Hydrangea macrophylla
HPP92_005201 Vanilla planifolia
HPP92_015184 Vanilla planifolia
Hund03079 Selenicereus undatus
Hund03080 Selenicereus undatus
Hund21012 Selenicereus undatus
Lalb_Chr16g0391871 Lupinus albus
Lalb_Chr24g0401271 Lupinus albus
Lj2A340G20 Lonicera japonica
Lj4g0007006 Lotus japonicus
Lj6A623T40 Lonicera japonica
Lj6g0020536 Lotus japonicus
Lsat_1_v5_gn_1_75260 Lactuca sativa
Lsat_1_v5_gn_8_107580 Lactuca sativa
Manes.03G160300 Manihot esculenta
Manes.15G044500 Manihot esculenta
Manes.16G060600 Manihot esculenta
Mapoly0019s0138 Marchantia polymorpha
MBI07_g18712_MAGBIO Magnolia biondii
MD10G1221300 Malus domestica
MD16G1224900 Malus domestica
Medtr1g045065 Medicago truncatula
Medtr8g070640 Medicago truncatula
MELO3C006386.2 Cucumis melo
MELO3C006994.2 Cucumis melo
Migut.N00293 Erythranthe guttata
Migut.N01903 Erythranthe guttata
MSTRG.24665 Avicennia marina
MSTRG.28023 Avicennia marina
Nitab4.5_0001051g0120 Nicotiana tabacum
Nitab4.5_0002709g0030 Nicotiana tabacum
Nitab4.5_0004266g0020 Nicotiana tabacum
Nitab4.5_0006120g0020 Nicotiana tabacum
Nn1g09845 Nelumbo nucifera
Nn3g19748 Nelumbo nucifera
Oeu021869.2 Olea europaea
Oeu026618.1 Olea europaea
Os01g0654300 Oryza sativa ssp. japonica
Os04g0512300 Oryza sativa ssp. japonica
Peaxi162Scf00033g02834 Petunia axillaris
Peaxi162Scf00040g00214 Petunia axillaris
PGR031G3743 Punica granatum
PGR042G3469 Punica granatum
PGR044G0165 Punica granatum
PGR044G0608 Punica granatum
PGSC0003DMG400017199 Solanum tuberosum
PGSC0003DMG400026351 Solanum tuberosum
Phvul.003G274500 Phaseolus vulgaris
Phvul.007G271200 Phaseolus vulgaris
Potri.001G073300 Populus trichocarpa
Potri.003G157700 Populus trichocarpa
Potri.008G170800 Populus trichocarpa
Potri.010G067100 Populus trichocarpa
Pp3c14_19930 Physcomitrium patens
Pp3c1_32330 Physcomitrium patens
Prupe.1G046200 Prunus persica
Prupe.4G123300 Prunus persica
Psat4g112480 Pisum sativum
Psat6g106400 Pisum sativum
PSO063G4440 Papaver somniferum
PSO339G4451 Papaver somniferum
PSO384G2720 Papaver somniferum
PSO782G1036 Papaver somniferum
QL06p020725 Quercus lobata
QL11p010611 Quercus lobata
QL11p010613 Quercus lobata
QL11p010620 Quercus lobata
RcHm_v2.0_Chr1g0328971 Rosa chinensis
RcHm_v2.0_Chr2g0116291 Rosa chinensis
RcHm_v2.0_Chr2g0116331 Rosa chinensis
RcHm_v2.0_Chr4g0394951 Rosa chinensis
RcHm_v2.0_Chr5g0022461 Rosa chinensis
RcHm_v2.0_Chr6g0246611 Rosa chinensis
RcHm_v2.0_Chr6g0255481 Rosa chinensis
RcHm_v2.0_Chr6g0255501 Rosa chinensis
Rhsim02G0042900 Rhododendron simsii
Rhsim13G0136800 Rhododendron simsii
Sabra01G0051700 Salix brachista
Sabra03G0114300 Salix brachista
Sabra08G0130600 Salix brachista
Sabra10G0040400 Salix brachista
SalBow3G4208 Salvia bowleyana
SalBow4G2049 Salvia bowleyana
SalBow4G2392 Salvia bowleyana
Sc19g0003310 Simmondsia chinensis
Sc25g0004730 Simmondsia chinensis
Sed0003310 Sechium edule
Sed0016806 Sechium edule
SEGI_02118 Sequoiadendron giganteum
SEGI_18231 Sequoiadendron giganteum
SGA_v2.0_scaffold263G46025 Striga asiatica
SGA_v2.0_scaffold43G16201 Striga asiatica
SHI16745 Sapria himalayana
SMO118G0168 Selaginella moellendorffii
Solyc09g090550.3 Solanum lycopersicum
Solyc11g068610.2 Solanum lycopersicum
Sopen09g033480 Solanum pennellii
Sopen11g027330 Solanum pennellii
Sp1g26720 Schrenkiella parvula
Sp4g15700 Schrenkiella parvula
TAR362G0649 Trochodendron aralioides
TAR627G0266 Trochodendron aralioides
THA.LOC104798576 Tarenaya hassleriana
THA.LOC104814331 Tarenaya hassleriana
THA.LOC104816001 Tarenaya hassleriana
Thecc.02G000300 Theobroma cacao
Thecc.04G262000 Theobroma cacao
Thhalv10008211m.g Eutrema salsugineum
Thhalv10017931m.g Eutrema salsugineum
TPR.G19832 Trifolium pratense
TPR.G28752 Trifolium pratense
TWI09G1115 Tripterygium wilfordii
TWI15G1089 Tripterygium wilfordii
TWI38G0493 Tripterygium wilfordii
unitig_26.g9498 Utricularia gibba
unitig_749.g13517 Utricularia gibba
vmacro03577 Vaccinium macrocarpon
vmacro15471 Vaccinium macrocarpon
VMungo0251G1067 Vigna mungo
VMungo0720G1830 Vigna mungo
Zm00001eb077440 Zea mays
Zm00001eb116800 Zea mays

User provided reference genes

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