Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p12750 Brassica napus
A07p01560 Brassica napus
A07p16410 Brassica napus
A09p12300 Brassica napus
A09p60730 Brassica napus
Aa31LG2G20580 Aethionema arabicum
Aa31LG4G2120 Aethionema arabicum
Aa31LG7G1280 Aethionema arabicum
Aa31LG8G16240 Aethionema arabicum
Actinidia00644 Actinidia chinensis
Actinidia02502 Actinidia chinensis
Ah.09g230240 Amaranthus hybridus
Ah.14g083520 Amaranthus hybridus
AL1G29010 Arabidopsis lyrata
AL2G39300 Arabidopsis lyrata
AL3G52740 Arabidopsis lyrata
Aqoxy7G02792 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.N1GZ92 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QW48HW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TSPZ50 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UM017F Arachis hypogaea
AT1G16840 Arabidopsis thaliana
AT1G78890 Arabidopsis thaliana
AT2G19180 Arabidopsis thaliana
ATR0626G079 Amborella trichopoda
Atru.chr1.2697 Acer truncatum
AUR62001345 Chenopodium quinoa
AUR62021349 Chenopodium quinoa
AUR62025659 Chenopodium quinoa
AUR62033263 Chenopodium quinoa
BcaB02g06672 Brassica carinata
BcaB03g14400 Brassica carinata
BcaB03g14401 Brassica carinata
BcaB03g16049 Brassica carinata
BcaB03g16711 Brassica carinata
BcaB07g31615 Brassica carinata
BcaB08g34846 Brassica carinata
BcaC04g22861 Brassica carinata
BcaC05g25540 Brassica carinata
BcaC06g36531 Brassica carinata
BcaC07g41386 Brassica carinata
BcaC07g41454 Brassica carinata
BcaC08g47445 Brassica carinata
BolC5t30221H Brassica oleracea
BolC6t40296H Brassica oleracea
BolC7t40720H Brassica oleracea
BolC7t42935H Brassica oleracea
BolC8t51969H Brassica oleracea
BolC9t54354H Brassica oleracea
BraA06t24435Z Brassica rapa
BraA07t27957Z Brassica rapa
BraA07t29368Z Brassica rapa
BraA07t31914Z Brassica rapa
BraA09t36874Z Brassica rapa
BraA09t41443Z Brassica rapa
C05p15060 Brassica napus
C07p03230 Brassica napus
C07p24110 Brassica napus
C07p24120 Brassica napus
C08p44230 Brassica napus
C09p14520 Brassica napus
CAN.G333.12 Capsicum annuum
CANSAT01G3163 Cannabis sativa
CARHR017310 Cardamine hirsuta
CARHR072470 Cardamine hirsuta
CARHR109660 Cardamine hirsuta
Carub.0001s1658 Capsella rubella
Carub.0002s2571 Capsella rubella
Carub.0003s3344 Capsella rubella
Ca_02103_v3 Cicer arietinum L.
Cc00_g10770 Coffea canephora
CDE02G2077 Ceratophyllum demersum
CDE05G1546 Ceratophyllum demersum
CDE06G0951 Ceratophyllum demersum
CDE07G1741 Ceratophyllum demersum
Cfa013449 Carpinus fangiana
Ciclev10009733m.g Citrus clementina
Ciclev10026672m.g Citrus clementina
CiPaw.01G090200 Carya illinoinensis
CiPaw.07G196700 Carya illinoinensis
CiPaw.08G032700 Carya illinoinensis
ClCG06G013570 Citrullus lanatus
ClCG07G014620 Citrullus lanatus
COL.COLO4_08420 Corchorus olitorius
Cpa.g.c27842.1 Carica papaya
Cpa.g.sc155.21 Carica papaya
CsaV3_1G031850 Cucumis sativus L.
CsaV3_7G030470 Cucumis sativus L.
CSS0007147 Camellia sinensis var. sinensis
CSS0013694 Camellia sinensis var. sinensis
DCAR_019803 Daucus carota
DCAR_022613 Daucus carota
Dinv14139 Davidia involucrata
Dinv20341 Davidia involucrata
Dinv25438 Davidia involucrata
Dinv41172 Davidia involucrata
Duzib160G0230 Durio zibethinus
Duzib168G2097 Durio zibethinus
Duzib235G0511 Durio zibethinus
ECA236G3686 Erigeron canadensis
ECA240G2099 Erigeron canadensis
EL10Ac7g18164 Beta vulgaris
EL10Ac8g18334 Beta vulgaris
Eucgr.C00119 Eucalyptus grandis
FAN02G2417 Fragaria x ananassa
FAN05G0930 Fragaria x ananassa
FAN09G4381 Fragaria x ananassa
FAN12G1372 Fragaria x ananassa
FAN14G0253 Fragaria x ananassa
FAN17G1264 Fragaria x ananassa
FAN22G0322 Fragaria x ananassa
FvH4_4g07330 Fragaria vesca
FvH4_6g37060 Fragaria vesca
Glyma.09G059400 Glycine max
Glyma.13G100300 Glycine max
Glyma.15G165700 Glycine max
Glyma.17G059600 Glycine max
Gohir.A06G118500 Gossypium hirsutum
Gohir.A10G002500 Gossypium hirsutum
Gohir.A13G208600 Gossypium hirsutum
Gohir.D06G122400 Gossypium hirsutum
Gohir.D10G002500 Gossypium hirsutum
Gohir.D13G213000 Gossypium hirsutum
Gorai.010G142600 Gossypium raimondii
Gorai.011G002900 Gossypium raimondii
Gorai.013G243300 Gossypium raimondii
GSVIVG01010865001 Vitis vinifera
HanXRQChr03g0068451 Helianthus annuus
HanXRQChr05g0140091 Helianthus annuus
HanXRQChr14g0438641 Helianthus annuus
Hma1.2p1_0517F.1_g170750 Hydrangea macrophylla
Hma1.2p1_1326F.1_g275800 Hydrangea macrophylla
HPP92_010792 Vanilla planifolia
HPP92_017120 Vanilla planifolia
HPP92_017125 Vanilla planifolia
Hund05677 Selenicereus undatus
Hund09061 Selenicereus undatus
Hund29632 Selenicereus undatus
Hund29634 Selenicereus undatus
Lalb_Chr07g0180641 Lupinus albus
Lalb_Chr08g0231811 Lupinus albus
Lalb_Chr08g0231821 Lupinus albus
Lalb_Chr08g0231891 Lupinus albus
Lalb_Chr11g0074791 Lupinus albus
Lalb_Chr12g0199601 Lupinus albus
Lj6g0007330 Lotus japonicus
Lj9P542T24 Lonicera japonica
Lsat_1_v5_gn_7_56340 Lactuca sativa
Lsat_1_v5_gn_8_69300 Lactuca sativa
Manes.06G177000 Manihot esculenta
Manes.14G007800 Manihot esculenta
Manes.14G158000 Manihot esculenta
MBI13_g34038_MAGBIO Magnolia biondii
MBI16_g05837_MAGBIO Magnolia biondii
MD13G1242300 Malus domestica
MD16G1249400 Malus domestica
MD17G1163800 Malus domestica
Medtr2g037970 Medicago truncatula
MELO3C017432.2 Cucumis melo
MELO3C022650.2 Cucumis melo
Migut.I01192 Erythranthe guttata
Migut.J00801 Erythranthe guttata
Migut.L01884 Erythranthe guttata
MSTRG.5942 Avicennia marina
Nitab4.5_0000617g0050 Nicotiana tabacum
Nitab4.5_0002354g0020 Nicotiana tabacum
Nitab4.5_0003757g0040 Nicotiana tabacum
Nitab4.5_0008862g0030 Nicotiana tabacum
Nn2g12759 Nelumbo nucifera
Nn8g40794 Nelumbo nucifera
Oeu006848.1 Olea europaea
Oeu044672.1 Olea europaea
Oeu049640.1 Olea europaea
Oeu056715.1 Olea europaea
Oeu064555.1 Olea europaea
Os04g0606700 Oryza sativa ssp. japonica
Os08g0230000 Oryza sativa ssp. japonica
Peaxi162Scf00038g02522 Petunia axillaris
Peaxi162Scf01600g00015 Petunia axillaris
PGR102G1040 Punica granatum
PGR142G4135 Punica granatum
PGSC0003DMG400026511 Solanum tuberosum
PGSC0003DMG400028728 Solanum tuberosum
Phvul.003G141600 Phaseolus vulgaris
Phvul.009G236400 Phaseolus vulgaris
Potri.008G005900 Populus trichocarpa
Potri.010G252800 Populus trichocarpa
Potri.018G142900 Populus trichocarpa
Prupe.1G076200 Prunus persica
Prupe.3G021500 Prunus persica
Psat1g145680 Pisum sativum
PSO063G7647 Papaver somniferum
PSO170G6627 Papaver somniferum
QL01p020768 Quercus lobata
QL04p081468 Quercus lobata
QL05p083992 Quercus lobata
RcHm_v2.0_Chr2g0149611 Rosa chinensis
RcHm_v2.0_Chr4g0399691 Rosa chinensis
RcHm_v2.0_Chr7g0236291 Rosa chinensis
Rhsim01G0117300 Rhododendron simsii
Rhsim12G0214900 Rhododendron simsii
Rhsim12G0215000 Rhododendron simsii
Sabra08G0003000 Salix brachista
Sabra18G0116700 Salix brachista
SalBow3G4096 Salvia bowleyana
SalBow5G4526 Salvia bowleyana
Sc15g0001020 Simmondsia chinensis
Sc17g0004450 Simmondsia chinensis
Sed0004372 Sechium edule
Sed0016901 Sechium edule
SEGI_14814 Sequoiadendron giganteum
SGA_v2.0_scaffold231G43411 Striga asiatica
SGA_v2.0_scaffold31G12762 Striga asiatica
SGA_v2.0_scaffold71G23992 Striga asiatica
SHI49894 Sapria himalayana
SHI50553 Sapria himalayana
Solyc06g063320.3 Solanum lycopersicum
Solyc07g008770.4 Solanum lycopersicum
Sopen06g022790 Solanum pennellii
Sopen07g004710 Solanum pennellii
Sp1g14980 Schrenkiella parvula
Sp3g32570 Schrenkiella parvula
Sp5g33900 Schrenkiella parvula
TAR383G0950 Trochodendron aralioides
TAR626G0777 Trochodendron aralioides
THA.LOC104808102 Tarenaya hassleriana
THA.LOC104813630 Tarenaya hassleriana
THA.LOC104820007 Tarenaya hassleriana
Thecc.06G058900 Theobroma cacao
Thecc.09G185700 Theobroma cacao
Thhalv10008939m.g Eutrema salsugineum
Thhalv10019101m.g Eutrema salsugineum
Thhalv10022870m.g Eutrema salsugineum
TPR.G7927 Trifolium pratense
TWI12G0424 Tripterygium wilfordii
TWI63G0655 Tripterygium wilfordii
TWI75G1671 Tripterygium wilfordii
unitig_27.g24758 Utricularia gibba
unitig_699.g19405 Utricularia gibba
unitig_746.g26789 Utricularia gibba
unitig_749.g14197 Utricularia gibba
unitig_77.g31478 Utricularia gibba
vmacro17057 Vaccinium macrocarpon
vmacro20817 Vaccinium macrocarpon
VMungo1215G2823 Vigna mungo
VMungo1309G0960 Vigna mungo
Zm00001eb071470 Zea mays
Zm00001eb178110 Zea mays
Zm00001eb414180 Zea mays
Zm00001eb430490 Zea mays

User provided reference genes

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