Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p26840 Brassica napus
A07p17890 Brassica napus
Aa31LG5G8980 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2835 Anthoceros agrestis
Actinidia24476 Actinidia chinensis
Actinidia38173 Actinidia chinensis
Ah.06g194780 Amaranthus hybridus
Ah.13g077190 Amaranthus hybridus
AL4G19990 Arabidopsis lyrata
Aqoxy1G00411 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1V7NTT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.574DNA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6TGQ9A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AQ4HSR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FF070U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z30F3P Arachis hypogaea
AT2G26800 Arabidopsis thaliana
ATR0307G060 Amborella trichopoda
Atru.chr10.351 Acer truncatum
Atru.chr10.358 Acer truncatum
Atru.chr4.2931 Acer truncatum
AUR62000218 Chenopodium quinoa
AUR62006563 Chenopodium quinoa
AUR62018368 Chenopodium quinoa
AUR62030294 Chenopodium quinoa
BcaB01g03032 Brassica carinata
BcaC01g04912 Brassica carinata
BcaC02g10845 Brassica carinata
BolC3t15560H Brassica oleracea
BolC4t23962H Brassica oleracea
BraA03t11896Z Brassica rapa
BraA07t29507Z Brassica rapa
C03p32180 Brassica napus
C04p24580 Brassica napus
CAN.G1167.9 Capsicum annuum
CAN.G667.1 Capsicum annuum
CANSAT35G1425 Cannabis sativa
CANSAT35G1455 Cannabis sativa
CANSAT54G0722 Cannabis sativa
CANSAT64G2533 Cannabis sativa
CANSAT64G2884 Cannabis sativa
CARHR118980 Cardamine hirsuta
Carub.0004s0725 Capsella rubella
Ca_06189_v3 Cicer arietinum L.
Ca_08376_v3 Cicer arietinum L.
Ca_23664_v3 Cicer arietinum L.
Cc00_g29420 Coffea canephora
Cc01_g06330 Coffea canephora
Cc06_g19930 Coffea canephora
CDE02G0388 Ceratophyllum demersum
CDE04G0003 Ceratophyllum demersum
CDE08G0153 Ceratophyllum demersum
Cfa009901 Carpinus fangiana
Cfa019989 Carpinus fangiana
Cfa025353 Carpinus fangiana
Ciclev10005026m.g Citrus clementina
Ciclev10011898m.g Citrus clementina
CiPaw.09G049300 Carya illinoinensis
CiPaw.13G148500 Carya illinoinensis
CiPaw.14G110900 Carya illinoinensis
ClCG02G022700 Citrullus lanatus
ClCG10G015600 Citrullus lanatus
COL.COLO4_01334 Corchorus olitorius
COL.COLO4_23431 Corchorus olitorius
COL.COLO4_24750 Corchorus olitorius
Cpa.g.sc743.1 Carica papaya
Cpa.g.sc92.86 Carica papaya
Cre12.g485550 Chlamydomonas reinhardtii
CsaV3_3G040810 Cucumis sativus L.
CsaV3_6G038810 Cucumis sativus L.
CSS0000999 Camellia sinensis var. sinensis
CSS0010769 Camellia sinensis var. sinensis
CSS0042854 Camellia sinensis var. sinensis
DCAR_016886 Daucus carota
DCAR_023831 Daucus carota
Dinv21475 Davidia involucrata
Dinv22213 Davidia involucrata
Dinv36147 Davidia involucrata
Duzib106G1671 Durio zibethinus
Duzib168G0245 Durio zibethinus
Duzib170G0542 Durio zibethinus
ECA238G0449 Erigeron canadensis
ECA240G1215 Erigeron canadensis
ECA248G0096 Erigeron canadensis
EL10Ac3g07258 Beta vulgaris
EL10Ac4g10090 Beta vulgaris
Eucgr.A02227 Eucalyptus grandis
Eucgr.B03752 Eucalyptus grandis
FAN04G0557 Fragaria x ananassa
FAN08G0320 Fragaria x ananassa
FAN13G1786 Fragaria x ananassa
FAN18G2582 Fragaria x ananassa
FAN19G0096 Fragaria x ananassa
FAN19G2950 Fragaria x ananassa
FAN26G1537 Fragaria x ananassa
FAN28G0444 Fragaria x ananassa
FAN28G2243 Fragaria x ananassa
FvH4_1g30200 Fragaria vesca
FvH4_5g27390 Fragaria vesca
Glyma.02G277900 Glycine max
Glyma.07G235400 Glycine max
Glyma.14G036600 Glycine max
Glyma.19G128600 Glycine max
Glyma.20G043000 Glycine max
Gohir.A07G121400 Gossypium hirsutum
Gohir.A11G306500 Gossypium hirsutum
Gohir.D07G125700 Gossypium hirsutum
Gohir.D11G322000 Gossypium hirsutum
Gorai.001G135600 Gossypium raimondii
Gorai.007G352100 Gossypium raimondii
GSVIVG01025756001 Vitis vinifera
GSVIVG01037343001 Vitis vinifera
HanXRQChr01g0008581 Helianthus annuus
HanXRQChr13g0419361 Helianthus annuus
HanXRQChr14g0432311 Helianthus annuus
Haze_20246 Corylus avellana
Haze_23262 Corylus avellana
Haze_26264 Corylus avellana
Hma1.2p1_0110F.1_g052910 Hydrangea macrophylla
Hma1.2p1_0455F.1_g156360 Hydrangea macrophylla
Hma1.2p1_0460F.1_g157610 Hydrangea macrophylla
HPP92_018981 Vanilla planifolia
Hund21963 Selenicereus undatus
Hund24564 Selenicereus undatus
Lalb_Chr17g0347831 Lupinus albus
Lalb_Chr18g0048411 Lupinus albus
Lalb_Chr22g0357591 Lupinus albus
Lj1A293T13 Lonicera japonica
Lj1A303T26 Lonicera japonica
Lj1g0013291 Lotus japonicus
Lj2A794T9 Lonicera japonica
Lj6g0022552 Lotus japonicus
Lsat_1_v5_gn_2_33141 Lactuca sativa
Lsat_1_v5_gn_3_111940 Lactuca sativa
Lsat_1_v5_gn_5_156361 Lactuca sativa
Manes.01G177800 Manihot esculenta
Manes.02G137900 Manihot esculenta
Manes.09G003100 Manihot esculenta
Mapoly0141s0013 Marchantia polymorpha
MBI02_g39606_MAGBIO Magnolia biondii
MBI04_g30112_MAGBIO Magnolia biondii
MBI13_g09210_MAGBIO Magnolia biondii
MBI15_g00869_MAGBIO Magnolia biondii
MBI15_g28817_MAGBIO Magnolia biondii
MBI19_g07495_MAGBIO Magnolia biondii
MBI19_g19207_MAGBIO Magnolia biondii
MD03G1157200 Malus domestica
MD11G1183500 Malus domestica
MD12G1006700 Malus domestica
MD12G1006800 Malus domestica
MD12G1094600 Malus domestica
MD15G1420700 Malus domestica
Medtr3g041700 Medicago truncatula
Medtr7g089330 Medicago truncatula
MELO3C009815.2 Cucumis melo
MELO3C014547.2 Cucumis melo
Migut.D00678 Erythranthe guttata
Migut.J01637 Erythranthe guttata
MSTRG.18472 Avicennia marina
MSTRG.19788 Avicennia marina
MSTRG.5993 Avicennia marina
MSTRG.6000 Avicennia marina
MSTRG.6346 Avicennia marina
MSTRG.6347 Avicennia marina
Nitab4.5_0001450g0050 Nicotiana tabacum
Nitab4.5_0001659g0140 Nicotiana tabacum
Nitab4.5_0002726g0020 Nicotiana tabacum
Nitab4.5_0004018g0010 Nicotiana tabacum
Nn2g14742 Nelumbo nucifera
Nn7g36870 Nelumbo nucifera
Nn8g41063 Nelumbo nucifera
Oeu024610.1 Olea europaea
Oeu025914.1 Olea europaea
Os01g0269000 Oryza sativa ssp. japonica
Os11g0137200 Oryza sativa ssp. japonica
Os12g0134000 Oryza sativa ssp. japonica
Peaxi162Scf00004g04126 Petunia axillaris
Peaxi162Scf00076g00329 Petunia axillaris
PGR042G1244 Punica granatum
PGR042G2203 Punica granatum
PGR102G2482 Punica granatum
PGSC0003DMG400026700 Solanum tuberosum
PGSC0003DMG400031250 Solanum tuberosum
PGSC0003DMG400033114 Solanum tuberosum
Phvul.001G121000 Phaseolus vulgaris
Phvul.006G016200 Phaseolus vulgaris
Phvul.008G202900 Phaseolus vulgaris
Potri.001G274004 Populus trichocarpa
Potri.006G036800 Populus trichocarpa
Potri.009G068600 Populus trichocarpa
Pp3c10_360 Physcomitrium patens
Pp3c11_25880 Physcomitrium patens
Pp3c7_480 Physcomitrium patens
Prupe.4G270500 Prunus persica
Prupe.7G031100 Prunus persica
Psat0s2305g0160 Pisum sativum
Psat3g080240 Pisum sativum
Psat5g191520 Pisum sativum
Psat5g204080 Pisum sativum
PSO339G6676 Papaver somniferum
PSO384G2687 Papaver somniferum
QL01p016641 Quercus lobata
QL07p011720 Quercus lobata
QL07p011729 Quercus lobata
RcHm_v2.0_Chr3g0491291 Rosa chinensis
RcHm_v2.0_Chr3g0491331 Rosa chinensis
RcHm_v2.0_Chr3g0491351 Rosa chinensis
RcHm_v2.0_Chr7g0218661 Rosa chinensis
Rhsim13G0206000 Rhododendron simsii
Sabra09G0051600 Salix brachista
SalBow6G4381 Salvia bowleyana
SalBow6G5937 Salvia bowleyana
Sc01g0006570 Simmondsia chinensis
Sc06g0004750 Simmondsia chinensis
Sed0006385 Sechium edule
Sed0022510 Sechium edule
SEGI_25442 Sequoiadendron giganteum
SGA_v2.0_scaffold29G12216 Striga asiatica
SGA_v2.0_scaffold451G51813 Striga asiatica
SGA_v2.0_scaffold66G22269 Striga asiatica
SMO228G0018 Selaginella moellendorffii
Solyc01g080170.3 Solanum lycopersicum
Solyc06g011530.3 Solanum lycopersicum
Solyc11g065070.2 Solanum lycopersicum
Sopen01g031950 Solanum pennellii
Sopen06g006760 Solanum pennellii
Sopen11g024810 Solanum pennellii
Sp4g08680 Schrenkiella parvula
TAR369G0914 Trochodendron aralioides
TAR623G1429 Trochodendron aralioides
THA.LOC104816941 Tarenaya hassleriana
Thecc.05G124400 Theobroma cacao
Thecc.09G245600 Theobroma cacao
Thhalv10022501m.g Eutrema salsugineum
TPR.G11875 Trifolium pratense
TPR.G16087 Trifolium pratense
TPR.G30991 Trifolium pratense
TPR.G37893 Trifolium pratense
TPR.G39984 Trifolium pratense
TPR.G643 Trifolium pratense
TWI53G1045 Tripterygium wilfordii
TWI74G1502 Tripterygium wilfordii
TWI79G1191 Tripterygium wilfordii
unitig_52.g16874 Utricularia gibba
unitig_899.g15647 Utricularia gibba
vmacro04049 Vaccinium macrocarpon
VMungo0540G1420 Vigna mungo
VMungo0647G1159 Vigna mungo
VMungo1383G3243 Vigna mungo
Zm00001eb196270 Zea mays
Zm00001eb333030 Zea mays

User provided reference genes

Program Settings