Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p20420 Brassica napus
A04p01640 Brassica napus
A07p25060 Brassica napus
A08p12710 Brassica napus
Aa31LG10G14490 Aethionema arabicum
Aa31LG2G12970 Aethionema arabicum
Actinidia02163 Actinidia chinensis
Actinidia12652 Actinidia chinensis
Actinidia14397 Actinidia chinensis
Actinidia33498 Actinidia chinensis
Ah.12g054420 Amaranthus hybridus
AL5G42620 Arabidopsis lyrata
AL7G37860 Arabidopsis lyrata
Aqoxy3G02766 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4S09TY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.73EWJC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IYGI6Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QKY2Z8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X0SKZJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X9KLSS Arachis hypogaea
AT3G60380 Arabidopsis thaliana
AT4G16790 Arabidopsis thaliana
ATR0057G080 Amborella trichopoda
Atru.chr5.159 Acer truncatum
Atru.chr9.1260 Acer truncatum
AUR62007124 Chenopodium quinoa
AUR62019993 Chenopodium quinoa
BcaB01g00585 Brassica carinata
BcaB02g07421 Brassica carinata
BcaB02g08170 Brassica carinata
BcaB04g18397 Brassica carinata
BcaC02g10154 Brassica carinata
BcaC07g38020 Brassica carinata
BcaC08g45049 Brassica carinata
BcaC09g50418 Brassica carinata
BcaNung00149 Brassica carinata
BolC1t02520H Brassica oleracea
BolC4t23917H Brassica oleracea
BolC4t24769H Brassica oleracea
BolC6t37829H Brassica oleracea
BolC8t48410H Brassica oleracea
BraA01t01971Z Brassica rapa
BraA03t15009Z Brassica rapa
BraA04t15888Z Brassica rapa
BraA04t18822Z Brassica rapa
BraA07t30146Z Brassica rapa
BraA08t33260Z Brassica rapa
C01p25660 Brassica napus
C03p79840 Brassica napus
C04p32180 Brassica napus
C06p26670 Brassica napus
CAN.G1178.4 Capsicum annuum
CAN.G362.10 Capsicum annuum
CAN.G62.18 Capsicum annuum
CAN.G880.8 Capsicum annuum
CANSAT21G1520 Cannabis sativa
CANSAT78G0750 Cannabis sativa
CARHR170700 Cardamine hirsuta
CARHR223410 Cardamine hirsuta
Carub.0007s2457 Capsella rubella
Carub.0007s2697 Capsella rubella
Ca_04031_v3 Cicer arietinum L.
Ca_21993_v3 Cicer arietinum L.
Cc02_g24920 Coffea canephora
Cc08_g12030 Coffea canephora
CDE02G3283 Ceratophyllum demersum
CDE11G1070 Ceratophyllum demersum
Cfa011088 Carpinus fangiana
Cfa012698 Carpinus fangiana
Ciclev10019703m.g Citrus clementina
CiPaw.11G082800 Carya illinoinensis
CiPaw.12G049400 Carya illinoinensis
CiPaw.13G027800 Carya illinoinensis
ClCG06G002590 Citrullus lanatus
ClCG10G002500 Citrullus lanatus
COL.COLO4_12427 Corchorus olitorius
COL.COLO4_37105 Corchorus olitorius
Cpa.g.sc101.27 Carica papaya
Cpa.g.sc89.63 Carica papaya
CsaV3_3G002530 Cucumis sativus L.
CsaV3_6G008540 Cucumis sativus L.
CSS0004447 Camellia sinensis var. sinensis
CSS0007822 Camellia sinensis var. sinensis
CSS0042834 Camellia sinensis var. sinensis
DCAR_008518 Daucus carota
DCAR_029769 Daucus carota
Dinv21670 Davidia involucrata
Dinv39178 Davidia involucrata
Duzib068G0659 Durio zibethinus
Duzib084G0904 Durio zibethinus
Duzib138G1759 Durio zibethinus
Duzib205G1850 Durio zibethinus
ECA232G3188 Erigeron canadensis
ECA246G2565 Erigeron canadensis
EL10Ac5g12331 Beta vulgaris
Eucgr.E00399 Eucalyptus grandis
Eucgr.E01574 Eucalyptus grandis
FAN01G1526 Fragaria x ananassa
FAN03G0252 Fragaria x ananassa
FAN04G0448 Fragaria x ananassa
FAN06G0867 Fragaria x ananassa
FAN06G1585 Fragaria x ananassa
FAN08G2407 Fragaria x ananassa
FAN10G1547 Fragaria x ananassa
FAN10G3136 Fragaria x ananassa
FAN13G0091 Fragaria x ananassa
FAN18G1828 Fragaria x ananassa
FvH4_5g19610 Fragaria vesca
FvH4_7g09850 Fragaria vesca
Glyma.01G122700 Glycine max
Glyma.05G062801 Glycine max
Glyma.09G241900 Glycine max
Glyma.17G144800 Glycine max
Glyma.18G253700 Glycine max
Glyma.19G105000 Glycine max
Gohir.A03G006140 Gossypium hirsutum
Gohir.A03G006260 Gossypium hirsutum
Gohir.A11G076200 Gossypium hirsutum
Gohir.A11G076400 Gossypium hirsutum
Gohir.A12G214900 Gossypium hirsutum
Gohir.D03G166200 Gossypium hirsutum
Gohir.D11G080700 Gossypium hirsutum
Gohir.D11G080900 Gossypium hirsutum
Gohir.D12G217500 Gossypium hirsutum
Gorai.003G175700 Gossypium raimondii
Gorai.003G175800 Gossypium raimondii
Gorai.007G086500 Gossypium raimondii
Gorai.008G233100 Gossypium raimondii
Gorai.N024700 Gossypium raimondii
GSVIVG01005822001 Vitis vinifera
HanXRQChr06g0164481 Helianthus annuus
HanXRQChr17g0549241 Helianthus annuus
Haze_02809 Corylus avellana
Haze_07935 Corylus avellana
Hma1.2p1_1196F.1_g266030 Hydrangea macrophylla
Hma1.2p1_1335F.1_g276370 Hydrangea macrophylla
HPP92_025690 Vanilla planifolia
HPP92_025695 Vanilla planifolia
Lalb_Chr01g0021551 Lupinus albus
Lalb_Chr03g0040271 Lupinus albus
Lalb_Chr05g0221081 Lupinus albus
Lalb_Chr09g0329931 Lupinus albus
Lalb_Chr16g0386561 Lupinus albus
Lalb_Chr16g0386581 Lupinus albus
Lj1g0002162 Lotus japonicus
Lj4g0006676 Lotus japonicus
Lj8C270T8 Lonicera japonica
Lsat_1_v5_gn_4_70940 Lactuca sativa
Manes.01G272300 Manihot esculenta
Manes.02G041900 Manihot esculenta
Manes.05G053100 Manihot esculenta
MD02G1216600 Malus domestica
MD04G1061300 Malus domestica
MD06G1054900 Malus domestica
MD07G1103700 Malus domestica
Medtr4g100530 Medicago truncatula
Medtr7g007880 Medicago truncatula
MELO3C013922.2 Cucumis melo
MELO3C022268.2 Cucumis melo
Migut.A00727 Erythranthe guttata
Migut.A01149 Erythranthe guttata
MSTRG.17138 Avicennia marina
Nitab4.5_0000506g0050 Nicotiana tabacum
Nitab4.5_0000618g0140 Nicotiana tabacum
Nitab4.5_0002206g0010 Nicotiana tabacum
Nitab4.5_0002601g0020 Nicotiana tabacum
Nitab4.5_0003553g0120 Nicotiana tabacum
Nitab4.5_0003696g0010 Nicotiana tabacum
Nitab4.5_0007283g0010 Nicotiana tabacum
Nn6g33844 Nelumbo nucifera
Nn6g33847 Nelumbo nucifera
Oeu017053.1 Olea europaea
Oeu032552.2 Olea europaea
Os10g0562000 Oryza sativa ssp. japonica
Peaxi162Scf00030g00052 Petunia axillaris
Peaxi162Scf00190g00123 Petunia axillaris
Peaxi162Scf00346g00062 Petunia axillaris
PGR042G0175 Punica granatum
PGR042G1682 Punica granatum
PGSC0003DMG400024151 Solanum tuberosum
PGSC0003DMG400025985 Solanum tuberosum
PGSC0003DMG400026237 Solanum tuberosum
Phvul.003G223300 Phaseolus vulgaris
Phvul.008G045300 Phaseolus vulgaris
Potri.001G155000 Populus trichocarpa
Potri.002G136600 Populus trichocarpa
Potri.003G079900 Populus trichocarpa
Potri.014G045300 Populus trichocarpa
Prupe.2G127500 Prunus persica
Prupe.5G064100 Prunus persica
Psat3g195680 Pisum sativum
Psat4g073480 Pisum sativum
PSO063G5636 Papaver somniferum
PSO675G5676 Papaver somniferum
PSO732G0525 Papaver somniferum
PSO782G0082 Papaver somniferum
QL04p030920 Quercus lobata
QL12p010923 Quercus lobata
QL12p011144 Quercus lobata
RcHm_v2.0_Chr1g0347391 Rosa chinensis
RcHm_v2.0_Chr7g0204301 Rosa chinensis
Rhsim01G0138600 Rhododendron simsii
Rhsim11G0050900 Rhododendron simsii
Sabra01G0124600 Salix brachista
Sabra02G0105900 Salix brachista
Sabra03G0049800 Salix brachista
Sabra14G0033200 Salix brachista
SalBow5G1298 Salvia bowleyana
Sc07g0009180 Simmondsia chinensis
Sed0011081 Sechium edule
Sed0017596 Sechium edule
SEGI_18028 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30196 Striga asiatica
SGA_v2.0_scaffold153G36916 Striga asiatica
SGA_v2.0_scaffold199G41225 Striga asiatica
SGA_v2.0_scaffold52G19216 Striga asiatica
SHI07780 Sapria himalayana
Solyc01g090440.2 Solanum lycopersicum
Solyc06g060820.2 Solanum lycopersicum
Solyc08g078290.1 Solanum lycopersicum
Sopen01g036230 Solanum pennellii
Sopen06g020970 Solanum pennellii
Sopen08g026790 Solanum pennellii
Sp5g02840 Schrenkiella parvula
Sp7g17320 Schrenkiella parvula
SpUn0080_0020 Schrenkiella parvula
TAR375G0301 Trochodendron aralioides
TAR629G0742 Trochodendron aralioides
TAR629G2869 Trochodendron aralioides
THA.LOC104802490 Tarenaya hassleriana
THA.LOC104807911 Tarenaya hassleriana
Thecc.01G392600 Theobroma cacao
Thecc.03G246800 Theobroma cacao
Thhalv10005806m.g Eutrema salsugineum
Thhalv10024963m.g Eutrema salsugineum
TPR.G12184 Trifolium pratense
TPR.G12302 Trifolium pratense
TPR.G37630 Trifolium pratense
TWI59G1099 Tripterygium wilfordii
TWI81G0105 Tripterygium wilfordii
unitig_26.g8872 Utricularia gibba
unitig_744.g24633 Utricularia gibba
unitig_750.g28398 Utricularia gibba
unitig_76.g29075 Utricularia gibba
vmacro00014 Vaccinium macrocarpon
vmacro22653 Vaccinium macrocarpon
VMungo0251G0835 Vigna mungo
VMungo0251G2534 Vigna mungo
VMungo1383G3385 Vigna mungo
Zm00001eb023650 Zea mays
Zm00001eb391080 Zea mays

User provided reference genes

Program Settings