Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p06120 Brassica napus
A03p61270 Brassica napus
A07p05470 Brassica napus
A08p18250 Brassica napus
Aa31LG2G17690 Aethionema arabicum
Aa31sc255G30 Aethionema arabicum
Aa31sc255G40 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4348 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1246 Anthoceros agrestis
Actinidia13228 Actinidia chinensis
Actinidia14602 Actinidia chinensis
Actinidia21960 Actinidia chinensis
Actinidia28514 Actinidia chinensis
Ah.10g035810 Amaranthus hybridus
AL3G46400 Arabidopsis lyrata
AL7G19580 Arabidopsis lyrata
Aqoxy7G03653 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0M6L3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6MIB10 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DBN3G1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FAMU12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N3R7MN Arachis hypogaea
AT2G14695 Arabidopsis thaliana
AT4G32272 Arabidopsis thaliana
ATR0800G095 Amborella trichopoda
Atru.chr7.1943 Acer truncatum
Atru.chr7.2439 Acer truncatum
AUR62011170 Chenopodium quinoa
AUR62012373 Chenopodium quinoa
AUR62013314 Chenopodium quinoa
AUR62014247 Chenopodium quinoa
AUR62031527 Chenopodium quinoa
AUR62043213 Chenopodium quinoa
BcaB03g12737 Brassica carinata
BcaB03g16233 Brassica carinata
BcaC01g01032 Brassica carinata
BcaC06g36029 Brassica carinata
BcaC09g52008 Brassica carinata
BcaNung03579 Brassica carinata
BcaNung06499 Brassica carinata
BolC1t00667H Brassica oleracea
BolC3t21050H Brassica oleracea
BolC7t41287H Brassica oleracea
BolC7t46368H Brassica oleracea
BraA03t15171Z Brassica rapa
BraA07t28340Z Brassica rapa
BraA08t33783Z Brassica rapa
C03p87410 Brassica napus
C07p08770 Brassica napus
C07p59130 Brassica napus
CAN.G1301.1 Capsicum annuum
CAN.G834.14 Capsicum annuum
CANSAT11G1013 Cannabis sativa
CANSAT54G2701 Cannabis sativa
CARHR240160 Cardamine hirsuta
Carub.0003s2872 Capsella rubella
Carub.0007s0832 Capsella rubella
Ca_01843_v3 Cicer arietinum L.
Ca_13030_v3 Cicer arietinum L.
Ca_15741_v3 Cicer arietinum L.
Ca_31151_v3 Cicer arietinum L.
CBR_g55067 Chara braunii
CBR_g60598 Chara braunii
Cc08_g00550 Coffea canephora
CDE12G0149 Ceratophyllum demersum
Cfa013138 Carpinus fangiana
Ciclev10008790m.g Citrus clementina
Ciclev10008844m.g Citrus clementina
CiPaw.04G174400 Carya illinoinensis
CiPaw.07G223800 Carya illinoinensis
CiPaw.08G010700 Carya illinoinensis
ClCG05G016840 Citrullus lanatus
ClCG11G003280 Citrullus lanatus
ClCG11G003330 Citrullus lanatus
COL.COLO4_18865 Corchorus olitorius
COL.COLO4_35141 Corchorus olitorius
Cpa.g.sc217.5 Carica papaya
Cpa.g.sc2283.3 Carica papaya
Cpa.g.sc46.34 Carica papaya
Cpa.g.sc52.8 Carica papaya
CsaV3_2G003100 Cucumis sativus L.
CsaV3_2G003190 Cucumis sativus L.
CsaV3_3G046360 Cucumis sativus L.
CSS0018320 Camellia sinensis var. sinensis
CSS0025916 Camellia sinensis var. sinensis
CSS0049969 Camellia sinensis var. sinensis
DCAR_003098 Daucus carota
DCAR_017797 Daucus carota
Dinv08636 Davidia involucrata
Dinv36485 Davidia involucrata
Dinv41481 Davidia involucrata
Duzib150G1006 Durio zibethinus
Duzib168G1145 Durio zibethinus
Duzib168G1930 Durio zibethinus
ECA236G1368 Erigeron canadensis
ECA246G4227 Erigeron canadensis
EL10Ac2g04207 Beta vulgaris
EL10Ac8g18711 Beta vulgaris
Eucgr.C01378 Eucalyptus grandis
Eucgr.C01729 Eucalyptus grandis
FAN15G2694 Fragaria x ananassa
FAN19G1624 Fragaria x ananassa
FAN20G3220 Fragaria x ananassa
FAN23G2846 Fragaria x ananassa
FAN24G0193 Fragaria x ananassa
FAN26G0336 Fragaria x ananassa
FAN28G0716 Fragaria x ananassa
FvH4_1g02630 Fragaria vesca
FvH4_2g28960 Fragaria vesca
Glyma.04G066200 Glycine max
Glyma.06G067600 Glycine max
Glyma.06G218500 Glycine max
Glyma.14G116200 Glycine max
Glyma.17G211500 Glycine max
Gohir.A05G014700 Gossypium hirsutum
Gohir.A07G028600 Gossypium hirsutum
Gohir.D05G015900 Gossypium hirsutum
Gohir.D07G032700 Gossypium hirsutum
Gorai.001G034200 Gossypium raimondii
Gorai.009G016000 Gossypium raimondii
GSVIVG01015580001 Vitis vinifera
GSVIVG01035867001 Vitis vinifera
HanXRQChr05g0138511 Helianthus annuus
HanXRQChr16g0510801 Helianthus annuus
Haze_21510 Corylus avellana
Haze_25517 Corylus avellana
Hma1.2p1_0243F.1_g100855 Hydrangea macrophylla
Hma1.2p1_0243F.1_g100860 Hydrangea macrophylla
HPP92_010498 Vanilla planifolia
HPP92_017361 Vanilla planifolia
Hund04517 Selenicereus undatus
Lalb_Chr04g0264541 Lupinus albus
Lalb_Chr11g0072221 Lupinus albus
Lalb_Chr11g0072231 Lupinus albus
Lj1g0001408 Lotus japonicus
Lj5g0010636 Lotus japonicus
Lj7A428T29 Lonicera japonica
Lj7A724G58 Lonicera japonica
Lsat_1_v5_gn_5_30281 Lactuca sativa
Lsat_1_v5_gn_8_62540 Lactuca sativa
Manes.03G014100 Manihot esculenta
Manes.06G048300 Manihot esculenta
Mapoly0045s0147 Marchantia polymorpha
MBI18_g31662_MAGBIO Magnolia biondii
MCO03G381 Micromonas commoda
MCO09G133 Micromonas commoda
MD02G1027300 Malus domestica
MD08G1154400 Malus domestica
MD15G1125800 Malus domestica
MD15G1168700 Malus domestica
Medtr1g012590 Medicago truncatula
Medtr2g085160 Medicago truncatula
MELO3C003703.2 Cucumis melo
MELO3C031342.2 Cucumis melo
MELO3C031571.2 Cucumis melo
MELO3C032858.2 Cucumis melo
Migut.A00037 Erythranthe guttata
Migut.E01804 Erythranthe guttata
MSTRG.11612 Avicennia marina
MSTRG.14094 Avicennia marina
MSTRG.1727 Avicennia marina
Nitab4.5_0000028g0010 Nicotiana tabacum
Nitab4.5_0002042g0110 Nicotiana tabacum
Nitab4.5_0004887g0020 Nicotiana tabacum
Nitab4.5_0004887g0030 Nicotiana tabacum
Nitab4.5_0009522g0010 Nicotiana tabacum
Nn2g12098 Nelumbo nucifera
Nn2g12385 Nelumbo nucifera
Nn8g39519 Nelumbo nucifera
Oeu012632.1 Olea europaea
Oeu033135.1 Olea europaea
Oeu056940.1 Olea europaea
Os02g0614100 Oryza sativa ssp. japonica
Peaxi162Scf00088g01625 Petunia axillaris
Peaxi162Scf00663g00320 Petunia axillaris
Peaxi162Scf00663g00321 Petunia axillaris
PGR031G2245 Punica granatum
PGSC0003DMG400020465 Solanum tuberosum
PGSC0003DMG400029089 Solanum tuberosum
PGSC0003DMG400030912 Solanum tuberosum
Phvul.001G050900 Phaseolus vulgaris
Phvul.009G092500 Phaseolus vulgaris
Phvul.009G205800 Phaseolus vulgaris
Potri.006G255400 Populus trichocarpa
Potri.018G026600 Populus trichocarpa
Potri.018G127400 Populus trichocarpa
Pp3c11_19580 Physcomitrium patens
PRCOL_00000460 Prasinoderma coloniale
PRCOL_00004413 Prasinoderma coloniale
PRCOL_00006715 Prasinoderma coloniale
Prupe.1G481800 Prunus persica
Prupe.7G247800 Prunus persica
Psat0s3273g0160 Pisum sativum
Psat5g028280 Pisum sativum
Psat5g244280 Pisum sativum
PSO017G0214 Papaver somniferum
PSO170G1672 Papaver somniferum
QL02p021515 Quercus lobata
QL02p089718 Quercus lobata
RcHm_v2.0_Chr2g0087661 Rosa chinensis
RcHm_v2.0_Chr3g0497301 Rosa chinensis
RcHm_v2.0_Chr6g0297811 Rosa chinensis
Rhsim01G0062900 Rhododendron simsii
Rhsim01G0064100 Rhododendron simsii
Rhsim02G0202000 Rhododendron simsii
Sabra06G0199700 Salix brachista
Sabra18G0029200 Salix brachista
Sabra18G0108100 Salix brachista
SalBow4G3003 Salvia bowleyana
Sc08g0006420 Simmondsia chinensis
Sc09g0008130 Simmondsia chinensis
Sed0011625 Sechium edule
Sed0025289 Sechium edule
SEGI_00400 Sequoiadendron giganteum
SGA_v2.0_scaffold163G37968 Striga asiatica
SGA_v2.0_scaffold20G09116 Striga asiatica
SHI18547 Sapria himalayana
SMO356G0265 Selaginella moellendorffii
Solyc01g009830.3 Solanum lycopersicum
Solyc07g007990.4 Solanum lycopersicum
Solyc08g066970.2 Solanum lycopersicum
Solyc08g066980.4 Solanum lycopersicum
Sopen01g005370 Solanum pennellii
Sopen07g003870 Solanum pennellii
Sopen08g020930 Solanum pennellii
Sp3g28290 Schrenkiella parvula
Sp7g30020 Schrenkiella parvula
TAR625G1063 Trochodendron aralioides
TAR636G0025 Trochodendron aralioides
TAR636G2391 Trochodendron aralioides
THA.LOC104803651 Tarenaya hassleriana
Thecc.09G023700 Theobroma cacao
Thecc.09G131000 Theobroma cacao
Thhalv10025618m.g Eutrema salsugineum
TPR.G15676 Trifolium pratense
TPR.G3139 Trifolium pratense
TPR.G3146 Trifolium pratense
TPR.G38954 Trifolium pratense
TPR.G38985 Trifolium pratense
TWI32G0388 Tripterygium wilfordii
TWI34G0801 Tripterygium wilfordii
TWI63G1154 Tripterygium wilfordii
unitig_32.g11116 Utricularia gibba
vmacro07716 Vaccinium macrocarpon
vmacro07717 Vaccinium macrocarpon
vmacro11179 Vaccinium macrocarpon
VMungo0647G1988 Vigna mungo
VMungo1309G1247 Vigna mungo
VMungo1309G2831 Vigna mungo
Zm00001eb184620 Zea mays
Zm00001eb247060 Zea mays

User provided reference genes

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