Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p38970 Brassica napus
A08p36680 Brassica napus
A10p03280 Brassica napus
A10p03300 Brassica napus
Aa31LG1G19860 Aethionema arabicum
Aa31sc37G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.309 Anthoceros agrestis
Actinidia11421 Actinidia chinensis
Actinidia23716 Actinidia chinensis
Actinidia39241 Actinidia chinensis
Ah.08g214490 Amaranthus hybridus
Ah.13g078100 Amaranthus hybridus
AL1G14570 Arabidopsis lyrata
AL8G21770 Arabidopsis lyrata
Aqoxy5G00020 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0B3YJA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.12L8KL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AI5VH5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LZLC15 Arachis hypogaea
AT1G04850 Arabidopsis thaliana
AT5G48690 Arabidopsis thaliana
ATR0609G128 Amborella trichopoda
Atru.chr4.1669 Acer truncatum
Atru.chr6.1415 Acer truncatum
AUR62001114 Chenopodium quinoa
AUR62016560 Chenopodium quinoa
AUR62018589 Chenopodium quinoa
AUR62020830 Chenopodium quinoa
BcaB02g06896 Brassica carinata
BcaB03g13469 Brassica carinata
BcaC05g24434 Brassica carinata
BcaC06g30767 Brassica carinata
BcaC07g36875 Brassica carinata
BolC5t29084H Brassica oleracea
BolC7t44456H Brassica oleracea
BolC8t46958H Brassica oleracea
BraA06t26811Z Brassica rapa
BraA08t35571Z Brassica rapa
BraA10t42604Z Brassica rapa
C07p39360 Brassica napus
C08p01530 Brassica napus
CAN.G1333.12 Capsicum annuum
CAN.G385.3 Capsicum annuum
CAN.G5.46 Capsicum annuum
CAN.G767.5 Capsicum annuum
CANSAT01G0798 Cannabis sativa
CANSAT01G2415 Cannabis sativa
CANSAT78G0345 Cannabis sativa
CARHR004240 Cardamine hirsuta
CARHR183210 Cardamine hirsuta
Carub.0001s0409 Capsella rubella
Carub.0008s0843 Capsella rubella
Ca_17962_v3 Cicer arietinum L.
Ca_17966_v3 Cicer arietinum L.
Ca_17967_v3 Cicer arietinum L.
CBR_g685 Chara braunii
Cc01_g16840 Coffea canephora
Cc03_g07950 Coffea canephora
CDE05G0937 Ceratophyllum demersum
Cfa002598 Carpinus fangiana
Cfa014907 Carpinus fangiana
Ciclev10005062m.g Citrus clementina
Ciclev10021209m.g Citrus clementina
CiPaw.01G120100 Carya illinoinensis
CiPaw.03G147500 Carya illinoinensis
CiPaw.04G104400 Carya illinoinensis
ClCG06G007890 Citrullus lanatus
ClCG11G012540 Citrullus lanatus
COL.COLO4_13747 Corchorus olitorius
COL.COLO4_13748 Corchorus olitorius
COL.COLO4_15646 Corchorus olitorius
COL.COLO4_20167 Corchorus olitorius
Cpa.g.sc443.2 Carica papaya
Cpa.g.sc443.3 Carica papaya
Cpa.g.sc8.133 Carica papaya
Cre01.g030550 Chlamydomonas reinhardtii
CsaV3_2G007990 Cucumis sativus L.
CsaV3_2G011630 Cucumis sativus L.
CSS0010384 Camellia sinensis var. sinensis
CSS0015960 Camellia sinensis var. sinensis
CSS0018864 Camellia sinensis var. sinensis
CSS0022664 Camellia sinensis var. sinensis
CSS0038389 Camellia sinensis var. sinensis
CSS0046590 Camellia sinensis var. sinensis
DCAR_000522 Daucus carota
DCAR_024465 Daucus carota
DCAR_029396 Daucus carota
Dinv12667 Davidia involucrata
Dinv27226 Davidia involucrata
Duzib133G0088 Durio zibethinus
Duzib138G0201 Durio zibethinus
Duzib151G1154 Durio zibethinus
Duzib268G0508 Durio zibethinus
ECA248G3569 Erigeron canadensis
EL10Ac3g07480 Beta vulgaris
EL10Ac7g17875 Beta vulgaris
Eucgr.H02771 Eucalyptus grandis
FAN07G2519 Fragaria x ananassa
FAN10G4226 Fragaria x ananassa
FAN12G1649 Fragaria x ananassa
FAN15G0280 Fragaria x ananassa
FAN22G0083 Fragaria x ananassa
FAN23G0792 Fragaria x ananassa
FAN23G3147 Fragaria x ananassa
FAN24G0431 Fragaria x ananassa
FAN27G3095 Fragaria x ananassa
FvH4_2g18750 Fragaria vesca
FvH4_4g13780 Fragaria vesca
Glyma.05G154200 Glycine max
Glyma.08G112000 Glycine max
Glyma.16G100800 Glycine max
Gohir.A03G094800 Gossypium hirsutum
Gohir.A07G200300 Gossypium hirsutum
Gohir.D02G114300 Gossypium hirsutum
Gohir.D07G206600 Gossypium hirsutum
Gorai.001G232900 Gossypium raimondii
Gorai.005G130000 Gossypium raimondii
GSVIVG01003278001 Vitis vinifera
GSVIVG01020909001 Vitis vinifera
HanXRQChr10g0279421 Helianthus annuus
HanXRQChr10g0279431 Helianthus annuus
HanXRQChr10g0279451 Helianthus annuus
HanXRQChr10g0310071 Helianthus annuus
Haze_11620 Corylus avellana
Haze_24849 Corylus avellana
Hma1.2p1_0171F.1_g075670 Hydrangea macrophylla
Hma1.2p1_0187F.1_g082360 Hydrangea macrophylla
HPP92_013624 Vanilla planifolia
HPP92_021423 Vanilla planifolia
Hund18420 Selenicereus undatus
Hund24396 Selenicereus undatus
Lalb_Chr12g0205501 Lupinus albus
Lalb_Chr13g0294891 Lupinus albus
Lalb_Chr19g0125761 Lupinus albus
Lj3C402G3 Lonicera japonica
Lj3C408G1 Lonicera japonica
Lj3g0012882 Lotus japonicus
Lj4g0002017 Lotus japonicus
Lsat_1_v5_gn_1_72020 Lactuca sativa
Lsat_1_v5_gn_9_13141 Lactuca sativa
Manes.03G146600 Manihot esculenta
Manes.12G046400 Manihot esculenta
Mapoly0009s0066 Marchantia polymorpha
MCO11G315 Micromonas commoda
MD04G1012000 Malus domestica
MD05G1173000 Malus domestica
MD13G1284100 Malus domestica
MD13G1284200 Malus domestica
Medtr8g013030 Medicago truncatula
Medtr8g085380 Medicago truncatula
MELO3C004086.2 Cucumis melo
MELO3C020440.2 Cucumis melo
Migut.D02495 Erythranthe guttata
Migut.N00399 Erythranthe guttata
MSTRG.18842 Avicennia marina
MSTRG.21971 Avicennia marina
Nitab4.5_0000045g0400 Nicotiana tabacum
Nitab4.5_0000345g0060 Nicotiana tabacum
Nitab4.5_0000401g0070 Nicotiana tabacum
Nitab4.5_0000676g0100 Nicotiana tabacum
Nitab4.5_0000850g0120 Nicotiana tabacum
Nitab4.5_0006210g0050 Nicotiana tabacum
Nitab4.5_0006210g0060 Nicotiana tabacum
Nn1g07916 Nelumbo nucifera
Nn225s45448 Nelumbo nucifera
Oeu018496.2 Olea europaea
Oeu018497.1 Olea europaea
Oeu055771.1 Olea europaea
Oeu055772.1 Olea europaea
Os02g0504500 Oryza sativa ssp. japonica
Os08g0526700 Oryza sativa ssp. japonica
Peaxi162Scf00047g00439 Petunia axillaris
Peaxi162Scf00398g00919 Petunia axillaris
Peaxi162Scf00652g00122 Petunia axillaris
Peaxi162Scf00753g00333 Petunia axillaris
PGR044G2315 Punica granatum
PGR083G0467 Punica granatum
PGSC0003DMG400026411 Solanum tuberosum
PGSC0003DMG400026879 Solanum tuberosum
PGSC0003DMG401004570 Solanum tuberosum
Phvul.003G290800 Phaseolus vulgaris
Phvul.010G020300 Phaseolus vulgaris
Potri.001G316400 Populus trichocarpa
Potri.002G244500 Populus trichocarpa
Potri.017G056900 Populus trichocarpa
Pp3c2_16680 Physcomitrium patens
Prupe.1G010500 Prunus persica
Prupe.8G200600 Prunus persica
Psat4g200400 Pisum sativum
Psat7g074280 Pisum sativum
PSO170G5398 Papaver somniferum
PSO357G0187 Papaver somniferum
QL06p025309 Quercus lobata
QL06p025333 Quercus lobata
QL09p052152 Quercus lobata
QL09p052245 Quercus lobata
QL09p053028 Quercus lobata
RcHm_v2.0_Chr4g0414661 Rosa chinensis
RcHm_v2.0_Chr6g0284401 Rosa chinensis
RcHm_v2.0_Chr6g0284421 Rosa chinensis
RcHm_v2.0_Chr6g0284441 Rosa chinensis
Rhsim01G0254800 Rhododendron simsii
Sabra02G0186000 Salix brachista
Sabra16G0200100 Salix brachista
SalBow3G1633 Salvia bowleyana
SalBow3G3614 Salvia bowleyana
SalBow6G2541 Salvia bowleyana
SalBow6G4014 Salvia bowleyana
Sc24g0003490 Simmondsia chinensis
Sc24g0004370 Simmondsia chinensis
Sc25g0005830 Simmondsia chinensis
Sed0012970 Sechium edule
Sed0019212 Sechium edule
Sed0021794 Sechium edule
SEGI_05435 Sequoiadendron giganteum
SGA_v2.0_scaffold128G34075 Striga asiatica
SGA_v2.0_scaffold18G08325 Striga asiatica
SHI00036 Sapria himalayana
SHI00037 Sapria himalayana
SHI00039 Sapria himalayana
SMO172G0136 Selaginella moellendorffii
Solyc09g059630.3 Solanum lycopersicum
Solyc09g092040.3 Solanum lycopersicum
Solyc12g098420.3 Solanum lycopersicum
Sopen00g013980 Solanum pennellii
Sopen09g022820 Solanum pennellii
Sopen09g034920 Solanum pennellii
Sopen12g033200 Solanum pennellii
Sp1g03690 Schrenkiella parvula
Sp2g19100 Schrenkiella parvula
TAR362G0277 Trochodendron aralioides
TAR633G0888 Trochodendron aralioides
THA.LOC104801025 Tarenaya hassleriana
THA.LOC104802663 Tarenaya hassleriana
THA.LOC104826121 Tarenaya hassleriana
Thecc.01G222600 Theobroma cacao
Thecc.04G200800 Theobroma cacao
Thhalv10004673m.g Eutrema salsugineum
Thhalv10007758m.g Eutrema salsugineum
TPR.G11870 Trifolium pratense
TPR.G22613 Trifolium pratense
TPR.G9153 Trifolium pratense
TWI18G0343 Tripterygium wilfordii
TWI53G0635 Tripterygium wilfordii
unitig_22.g6824 Utricularia gibba
unitig_26.g9440 Utricularia gibba
vmacro14744 Vaccinium macrocarpon
vmacro15549 Vaccinium macrocarpon
VMungo0331G0358 Vigna mungo
VMungo1309G0164 Vigna mungo
Zm00001eb175040 Zea mays
Zm00001eb181030 Zea mays

User provided reference genes

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