Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p20770 Brassica napus
A07p30690 Brassica napus
Aa31LG4G7010 Aethionema arabicum
Aa31LG4G9110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3581 Anthoceros agrestis
Actinidia27369 Actinidia chinensis
Actinidia29392 Actinidia chinensis
Actinidia33738 Actinidia chinensis
Ah.07g196580 Amaranthus hybridus
Ah.11g043280 Amaranthus hybridus
AL2G31140 Arabidopsis lyrata
AL7G47950 Arabidopsis lyrata
Aqoxy5G00847 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4VP9UF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A85HWF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BUI0SE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DD74S9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IX2F7U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TL04YN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WZK5NF Arachis hypogaea
AT1G71480 Arabidopsis thaliana
AT5G41470 Arabidopsis thaliana
ATR0661G383 Amborella trichopoda
ATR1089G026 Amborella trichopoda
Atru.chr13.2449 Acer truncatum
Atru.chr9.2137 Acer truncatum
AUR62010728 Chenopodium quinoa
AUR62019734 Chenopodium quinoa
AUR62022409 Chenopodium quinoa
AUR62042167 Chenopodium quinoa
BcaB02g07891 Brassica carinata
BcaC08g44532 Brassica carinata
BcaC08g45773 Brassica carinata
BcaC08g46583 Brassica carinata
BolC4t26442H Brassica oleracea
BolC6t37179H Brassica oleracea
BolC6t38677H Brassica oleracea
BolC6t39614H Brassica oleracea
BraA07t29769Z Brassica rapa
BraA07t30707Z Brassica rapa
BraA07t31339Z Brassica rapa
C04p48510 Brassica napus
C06p19920 Brassica napus
C06p35560 Brassica napus
C06p45630 Brassica napus
CAN.G1039.10 Capsicum annuum
CAN.G532.18 Capsicum annuum
CAN.G532.19 Capsicum annuum
CANSAT21G1564 Cannabis sativa
CANSAT25G1454 Cannabis sativa
CANSAT56G3529 Cannabis sativa
CARHR213840 Cardamine hirsuta
CARHR291200 Cardamine hirsuta
Carub.0002s1834 Capsella rubella
Carub.0007s3403 Capsella rubella
Cc03_g15810 Coffea canephora
Cc08_g15110 Coffea canephora
Cc10_g08820 Coffea canephora
CDE05G0322 Ceratophyllum demersum
CDE11G0610 Ceratophyllum demersum
Cfa008098 Carpinus fangiana
Cfa012191 Carpinus fangiana
Cfa018348 Carpinus fangiana
Ciclev10022055m.g Citrus clementina
CiPaw.03G016400 Carya illinoinensis
CiPaw.11G131300 Carya illinoinensis
CiPaw.15G020400 Carya illinoinensis
ClCG01G002430 Citrullus lanatus
ClCG09G019570 Citrullus lanatus
COL.COLO4_03661 Corchorus olitorius
COL.COLO4_09994 Corchorus olitorius
Cpa.g.sc180.25 Carica papaya
Cpa.g.sc21.67 Carica papaya
Cre02.g088500 Chlamydomonas reinhardtii
CsaV3_5G002540 Cucumis sativus L.
CsaV3_5G026810 Cucumis sativus L.
CSS0030148 Camellia sinensis var. sinensis
CSS0032411 Camellia sinensis var. sinensis
CSS0032449 Camellia sinensis var. sinensis
DCAR_000629 Daucus carota
DCAR_014054 Daucus carota
DCAR_026637 Daucus carota
Dinv02435 Davidia involucrata
Dinv02444 Davidia involucrata
Dinv38911 Davidia involucrata
Duzib093G1208 Durio zibethinus
Duzib205G0538 Durio zibethinus
Duzib213G0118 Durio zibethinus
Duzib213G0154 Durio zibethinus
Duzib213G0784 Durio zibethinus
ECA233G2193 Erigeron canadensis
EL10Ac1g01732 Beta vulgaris
EL10Ac5g12821 Beta vulgaris
Eucgr.E00647 Eucalyptus grandis
Eucgr.E00649 Eucalyptus grandis
Eucgr.F02973 Eucalyptus grandis
FAN04G0315 Fragaria x ananassa
FAN08G1704 Fragaria x ananassa
FAN08G3121 Fragaria x ananassa
FAN13G2577 Fragaria x ananassa
FAN15G2191 Fragaria x ananassa
FAN18G2249 Fragaria x ananassa
FAN20G0622 Fragaria x ananassa
FAN24G0836 Fragaria x ananassa
FvH4_2g14400 Fragaria vesca
FvH4_5g03000 Fragaria vesca
FvH4_5g33211 Fragaria vesca
Glyma.01G221700 Glycine max
Glyma.01G231300 Glycine max
Glyma.04G239600 Glycine max
Glyma.06G124250 Glycine max
Glyma.11G014300 Glycine max
Gohir.A02G066001 Gossypium hirsutum
Gohir.A12G234200 Gossypium hirsutum
Gohir.A13G153132 Gossypium hirsutum
Gohir.D02G071900 Gossypium hirsutum
Gohir.D12G233100 Gossypium hirsutum
Gohir.D13G157700 Gossypium hirsutum
Gorai.005G081100 Gossypium raimondii
Gorai.008G249500 Gossypium raimondii
Gorai.013G178400 Gossypium raimondii
GSVIVG01036391001 Vitis vinifera
HanXRQChr13g0396511 Helianthus annuus
HanXRQChr17g0559011 Helianthus annuus
Haze_08826 Corylus avellana
Haze_13938 Corylus avellana
Haze_17723 Corylus avellana
Hma1.2p1_0004F.1_g003790 Hydrangea macrophylla
Hma1.2p1_0004F.1_g003800 Hydrangea macrophylla
Hma1.2p1_0216F.1_g090940 Hydrangea macrophylla
HPP92_009206 Vanilla planifolia
HPP92_028537 Vanilla planifolia
Hund17567 Selenicereus undatus
Lalb_Chr05g0211391 Lupinus albus
Lalb_Chr08g0240711 Lupinus albus
Lalb_Chr09g0320851 Lupinus albus
Lj9A699T54 Lonicera japonica
LjContig00222g0027382 Lotus japonicus
LjContig00312_ERROPOS870357g0020900 Lotus japonicus
Lsat_1_v5_gn_4_133100 Lactuca sativa
Lsat_1_v5_gn_6_4781 Lactuca sativa
Manes.01G058300 Manihot esculenta
Manes.18G119000 Manihot esculenta
Mapoly0125s0025 Marchantia polymorpha
MBI04_g31950_MAGBIO Magnolia biondii
MBI04_g39574_MAGBIO Magnolia biondii
MBI06_g21934_MAGBIO Magnolia biondii
MD06G1089000 Malus domestica
MD08G1213700 Malus domestica
Medtr3g090440 Medicago truncatula
Medtr5g010050 Medicago truncatula
Medtr7g018880 Medicago truncatula
MELO3C005702.2 Cucumis melo
MELO3C021613.2 Cucumis melo
Migut.C01366 Erythranthe guttata
Migut.E01200 Erythranthe guttata
MSTRG.1588 Avicennia marina
Nitab4.5_0000769g0180 Nicotiana tabacum
Nitab4.5_0000947g0080 Nicotiana tabacum
Nitab4.5_0002282g0070 Nicotiana tabacum
Nitab4.5_0005550g0050 Nicotiana tabacum
Nitab4.5_0005586g0050 Nicotiana tabacum
Nitab4.5_0006500g0010 Nicotiana tabacum
Nn1g01627 Nelumbo nucifera
Nn5g27270 Nelumbo nucifera
Oeu023204.1 Olea europaea
Oeu031426.3 Olea europaea
Oeu049859.2 Olea europaea
Os09g0266000 Oryza sativa ssp. japonica
Peaxi162Scf00074g01837 Petunia axillaris
Peaxi162Scf00078g00352 Petunia axillaris
PGR042G0864 Punica granatum
PGR042G2485 Punica granatum
PGSC0003DMG400012326 Solanum tuberosum
Phvul.002G035800 Phaseolus vulgaris
Phvul.002G159200 Phaseolus vulgaris
Phvul.009G136300 Phaseolus vulgaris
Potri.001G100500 Populus trichocarpa
Potri.002G070800 Populus trichocarpa
Potri.003G131500 Populus trichocarpa
Potri.013G100600 Populus trichocarpa
Potri.019G074800 Populus trichocarpa
Pp3c17_5580 Physcomitrium patens
Prupe.1G545800 Prunus persica
Prupe.5G104900 Prunus persica
Prupe.8G022100 Prunus persica
Psat2g182960 Pisum sativum
Psat3g022440 Pisum sativum
Psat3g191440 Pisum sativum
PSO017G3694 Papaver somniferum
PSO063G0080 Papaver somniferum
PSO832G1614 Papaver somniferum
QL02p024910 Quercus lobata
QL09p003658 Quercus lobata
QL12p032067 Quercus lobata
RcHm_v2.0_Chr6g0276731 Rosa chinensis
RcHm_v2.0_Chr7g0196861 Rosa chinensis
RcHm_v2.0_Chr7g0231601 Rosa chinensis
Rhsim07G0088000 Rhododendron simsii
Rhsim08G0115600 Rhododendron simsii
Sabra01G0075300 Salix brachista
Sabra02G0055500 Salix brachista
Sabra03G0093800 Salix brachista
Sabra05G0144200 Salix brachista
Sabra19G0085500 Salix brachista
SalBow8G0983 Salvia bowleyana
Sc22g0005360 Simmondsia chinensis
Sed0004172 Sechium edule
Sed0018292 Sechium edule
SEGI_03600 Sequoiadendron giganteum
SEGI_04580 Sequoiadendron giganteum
SEGI_16879 Sequoiadendron giganteum
SEGI_29799 Sequoiadendron giganteum
SEGI_30590 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32594 Striga asiatica
SGA_v2.0_scaffold144G35908 Striga asiatica
SGA_v2.0_scaffold1534G53980 Striga asiatica
SMO200G0065 Selaginella moellendorffii
Solyc08g081450.4 Solanum lycopersicum
Solyc11g042620.3 Solanum lycopersicum
Solyc12g056190.2 Solanum lycopersicum
Sopen08g029770 Solanum pennellii
Sopen08g029780 Solanum pennellii
Sopen11g018770 Solanum pennellii
Sopen12g028700 Solanum pennellii
Sp5g26630 Schrenkiella parvula
Sp7g00520 Schrenkiella parvula
TAR374G0018 Trochodendron aralioides
TAR628G0730 Trochodendron aralioides
THA.LOC104810399 Tarenaya hassleriana
THA.LOC104813701 Tarenaya hassleriana
THA.LOC104817848 Tarenaya hassleriana
Thecc.03G284700 Theobroma cacao
Thecc.07G155300 Theobroma cacao
Thecc.07G155700 Theobroma cacao
Thecc.08G146300 Theobroma cacao
Thhalv10019116m.g Eutrema salsugineum
Thhalv10028091m.g Eutrema salsugineum
TPR.G18781 Trifolium pratense
TPR.G27193 Trifolium pratense
TPR.G28573 Trifolium pratense
TPR.G6622 Trifolium pratense
TWI18G0548 Tripterygium wilfordii
TWI60G1150 Tripterygium wilfordii
unitig_37.g13082 Utricularia gibba
vmacro17840 Vaccinium macrocarpon
VMungo1215G1904 Vigna mungo
VMungo1215G3300 Vigna mungo
VMungo1309G0217 Vigna mungo
VMungo1309G2502 Vigna mungo
Zm00001eb065330 Zea mays
Zm00001eb127280 Zea mays

User provided reference genes

Program Settings