Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p38680 Brassica napus
A05p18680 Brassica napus
A05p34100 Brassica napus
A06p01280 Brassica napus
Actinidia09686 Actinidia chinensis
Actinidia11027 Actinidia chinensis
Actinidia12806 Actinidia chinensis
Ah.01g004220 Amaranthus hybridus
Ah.06g184200 Amaranthus hybridus
AL1G61390 Arabidopsis lyrata
AL3G27800 Arabidopsis lyrata
Aqoxy1G02410 Aquilegia oxysepala
Aqoxy4G00787 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.22PLV7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7JC3R4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8X6DXW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y16IUA Arachis hypogaea
AT1G53035 Arabidopsis thaliana
AT3G15358 Arabidopsis thaliana
ATR0824G185 Amborella trichopoda
Atru.chr6.2986 Acer truncatum
AUR62019421 Chenopodium quinoa
AUR62034294 Chenopodium quinoa
BcaB02g10923 Brassica carinata
BcaB04g20935 Brassica carinata
BcaB06g29560 Brassica carinata
BcaB07g33363 Brassica carinata
BcaC05g28983 Brassica carinata
BcaC08g43490 Brassica carinata
BcaC08g44040 Brassica carinata
BcaC09g48498 Brassica carinata
BolC1t04875H Brassica oleracea
BolC5t33872H Brassica oleracea
BolC6t35950H Brassica oleracea
BolC6t36623H Brassica oleracea
BraA01t03916Z Brassica rapa
BraA05t20756Z Brassica rapa
BraA05t22231Z Brassica rapa
BraA06t23354Z Brassica rapa
C01p49110 Brassica napus
C05p51850 Brassica napus
C06p08740 Brassica napus
CAN.G1110.58 Capsicum annuum
CAN.G248.2 Capsicum annuum
CANSAT35G1366 Cannabis sativa
CANSAT56G1281 Cannabis sativa
CARHR043260 Cardamine hirsuta
CARHR090360 Cardamine hirsuta
CARHR215330 Cardamine hirsuta
Carub.0001s4219 Capsella rubella
Carub.0003s1503 Capsella rubella
Ca_00337_v3 Cicer arietinum L.
Cc00_g20440 Coffea canephora
Cc05_g07200 Coffea canephora
Cc05_g12040 Coffea canephora
CDE07G0834 Ceratophyllum demersum
Cfa000466 Carpinus fangiana
Cfa020586 Carpinus fangiana
Ciclev10009828m.g Citrus clementina
Ciclev10017087m.g Citrus clementina
Ciclev10017871m.g Citrus clementina
CiPaw.11G169600 Carya illinoinensis
CiPaw.12G118200 Carya illinoinensis
ClCG01G023020 Citrullus lanatus
COL.COLO4_27169 Corchorus olitorius
COL.COLO4_30207 Corchorus olitorius
COL.COLO4_31466 Corchorus olitorius
Cpa.g.sc34.174 Carica papaya
Cpa.g.sc80.63 Carica papaya
CsaV3_3G019410 Cucumis sativus L.
CsaV3_6G050150 Cucumis sativus L.
CSS0003393 Camellia sinensis var. sinensis
CSS0023004 Camellia sinensis var. sinensis
CSS0027254 Camellia sinensis var. sinensis
CSS0033032 Camellia sinensis var. sinensis
CSS0048477 Camellia sinensis var. sinensis
DCAR_008039 Daucus carota
DCAR_013106 Daucus carota
DCAR_020987 Daucus carota
Dinv07562 Davidia involucrata
Duzib160G0083 Durio zibethinus
Duzib170G0740 Durio zibethinus
Duzib213G0214 Durio zibethinus
Duzib235G0658 Durio zibethinus
Duzib248G1456 Durio zibethinus
EL10Ac9g20775 Beta vulgaris
Eucgr.E03276 Eucalyptus grandis
Eucgr.E03283 Eucalyptus grandis
Eucgr.E03287 Eucalyptus grandis
Eucgr.E03293 Eucalyptus grandis
Eucgr.F01128 Eucalyptus grandis
FAN11G0076 Fragaria x ananassa
FAN11G0570 Fragaria x ananassa
FAN16G2125 Fragaria x ananassa
FAN16G3057 Fragaria x ananassa
FAN21G0069 Fragaria x ananassa
FAN21G3890 Fragaria x ananassa
FAN25G1852 Fragaria x ananassa
FAN25G3178 Fragaria x ananassa
FvH4_3g09111 Fragaria vesca
FvH4_3g09112 Fragaria vesca
FvH4_3g19950 Fragaria vesca
Glyma.01G099500 Glycine max
Glyma.04G162000 Glycine max
Glyma.06G188700 Glycine max
Glyma.06G242700 Glycine max
Glyma.12G154500 Glycine max
Glyma.12G224300 Glycine max
Glyma.13G238900 Glycine max
Glyma.13G277000 Glycine max
Glyma.15G074400 Glycine max
Glyma.17G172300 Glycine max
Gohir.A01G063700 Gossypium hirsutum
Gohir.A03G156000 Gossypium hirsutum
Gohir.A04G030500 Gossypium hirsutum
Gohir.A05G161500 Gossypium hirsutum
Gohir.A06G127000 Gossypium hirsutum
Gohir.A10G026100 Gossypium hirsutum
Gohir.A12G138400 Gossypium hirsutum
Gohir.D01G050100 Gossypium hirsutum
Gohir.D02G179100 Gossypium hirsutum
Gohir.D05G164300 Gossypium hirsutum
Gohir.D05G337900 Gossypium hirsutum
Gohir.D05G355600 Gossypium hirsutum
Gohir.D06G131900 Gossypium hirsutum
Gohir.D10G026700 Gossypium hirsutum
Gohir.D12G142700 Gossypium hirsutum
Gorai.002G070000 Gossypium raimondii
Gorai.005G200900 Gossypium raimondii
Gorai.008G154000 Gossypium raimondii
Gorai.009G169500 Gossypium raimondii
Gorai.009G388000 Gossypium raimondii
Gorai.010G153700 Gossypium raimondii
Gorai.011G028000 Gossypium raimondii
GSVIVG01005213001 Vitis vinifera
GSVIVG01020555001 Vitis vinifera
HanXRQChr07g0198861 Helianthus annuus
HanXRQChr12g0364251 Helianthus annuus
HanXRQChr17g0555081 Helianthus annuus
Haze_06449 Corylus avellana
Haze_09426 Corylus avellana
Hma1.2p1_0885F.1_g232580 Hydrangea macrophylla
Hma1.2p1_0898F.1_g234410 Hydrangea macrophylla
Lalb_Chr18g0059621 Lupinus albus
Lalb_Chr19g0134201 Lupinus albus
Lalb_Chr20g0121881 Lupinus albus
Lj1P843T26 Lonicera japonica
Lj3g0006491 Lotus japonicus
Lj3g0017575 Lotus japonicus
Lj6g0011192 Lotus japonicus
Lj8P111T14 Lonicera japonica
Lsat_1_v5_gn_8_135780 Lactuca sativa
Lsat_1_v5_gn_9_98100 Lactuca sativa
Manes.03G110300 Manihot esculenta
Manes.13G145800 Manihot esculenta
Manes.15G086900 Manihot esculenta
Manes.16G028200 Manihot esculenta
Manes.17G046000 Manihot esculenta
MD02G1012100 Malus domestica
MD03G1227700 Malus domestica
MD10G1293900 Malus domestica
MD11G1247000 Malus domestica
Medtr0271s0070 Medicago truncatula
Medtr1g092420 Medicago truncatula
Medtr2g013680 Medicago truncatula
MELO3C007281.2 Cucumis melo
MELO3C019413.2 Cucumis melo
Migut.H01938 Erythranthe guttata
Migut.M00806 Erythranthe guttata
MSTRG.12909 Avicennia marina
MSTRG.6836 Avicennia marina
Nitab4.5_0000207g0110 Nicotiana tabacum
Nitab4.5_0000638g0240 Nicotiana tabacum
Nitab4.5_0002383g0070 Nicotiana tabacum
Nitab4.5_0014741g0020 Nicotiana tabacum
Nn1g04099 Nelumbo nucifera
Nn1g06532 Nelumbo nucifera
Oeu016898.1 Olea europaea
Oeu024911.1 Olea europaea
Oeu030712.1 Olea europaea
Oeu034589.1 Olea europaea
Oeu040637.1 Olea europaea
Oeu043912.1 Olea europaea
Oeu060553.1 Olea europaea
Peaxi162Scf00069g01431 Petunia axillaris
Peaxi162Scf00132g00007 Petunia axillaris
Peaxi162Scf00558g00510 Petunia axillaris
PGR031G3705 Punica granatum
PGR042G0287 Punica granatum
PGR083G2213 Punica granatum
PGSC0003DMG400018340 Solanum tuberosum
PGSC0003DMG400025039 Solanum tuberosum
Phvul.005G072100 Phaseolus vulgaris
Phvul.006G185200 Phaseolus vulgaris
Phvul.008G126900 Phaseolus vulgaris
Potri.001G399900 Populus trichocarpa
Potri.004G044000 Populus trichocarpa
Potri.011G052900 Populus trichocarpa
Potri.011G119200 Populus trichocarpa
Potri.013G130100 Populus trichocarpa
Prupe.4G047900 Prunus persica
Prupe.4G181300 Prunus persica
Psat1g204800 Pisum sativum
Psat5g244400 Pisum sativum
PSO210G5650 Papaver somniferum
PSO478G1404 Papaver somniferum
PSO782G1562 Papaver somniferum
PSO832G1113 Papaver somniferum
QL05p040585 Quercus lobata
QL08p021816 Quercus lobata
RcHm_v2.0_Chr5g0008521 Rosa chinensis
RcHm_v2.0_Chr5g0033631 Rosa chinensis
Rhsim06G0199000 Rhododendron simsii
Rhsim13G0178300 Rhododendron simsii
Sabra04G0027200 Salix brachista
Sabra11G0103700 Salix brachista
Sabra13G0108100 Salix brachista
Sabra18G0026300 Salix brachista
SalBow1G1551 Salvia bowleyana
SalBow1G2971 Salvia bowleyana
SalBow7G0138 Salvia bowleyana
Sc03g0009980 Simmondsia chinensis
Sed0003245 Sechium edule
Sed0025037 Sechium edule
Solyc07g053940.1 Solanum lycopersicum
Solyc10g007030.2 Solanum lycopersicum
Sopen07g027920 Solanum pennellii
Sopen10g002930 Solanum pennellii
Sp1g39590 Schrenkiella parvula
Sp3g13560 Schrenkiella parvula
TAR626G1803 Trochodendron aralioides
TAR627G1153 Trochodendron aralioides
TAR629G1286 Trochodendron aralioides
THA.LOC104810474 Tarenaya hassleriana
THA.LOC104815552 Tarenaya hassleriana
Thecc.02G180900 Theobroma cacao
Thecc.06G186700 Theobroma cacao
Thecc.07G089500 Theobroma cacao
Thhalv10011848m.g Eutrema salsugineum
Thhalv10021717m.g Eutrema salsugineum
TPR.G16521 Trifolium pratense
TPR.G38976 Trifolium pratense
TWI14G1173 Tripterygium wilfordii
TWI38G1002 Tripterygium wilfordii
TWI38G1980 Tripterygium wilfordii
TWI63G0998 Tripterygium wilfordii
unitig_21.g20071 Utricularia gibba
unitig_26.g9533 Utricularia gibba
vmacro03870 Vaccinium macrocarpon
vmacro11864 Vaccinium macrocarpon
VMungo0464G0049 Vigna mungo
VMungo0540G2358 Vigna mungo
VMungo1080G0060 Vigna mungo

User provided reference genes

Program Settings