Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p10280 Brassica napus
A09p23210 Brassica napus
Aa31LG9G17790 Aethionema arabicum
Aa31sc219G50 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2870 Anthoceros agrestis
Actinidia03240 Actinidia chinensis
Actinidia03242 Actinidia chinensis
Actinidia28956 Actinidia chinensis
Actinidia40005 Actinidia chinensis
Ah.14g087370 Amaranthus hybridus
AL7G45410 Arabidopsis lyrata
AL7G45420 Arabidopsis lyrata
AL8G10190 Arabidopsis lyrata
Aqoxy1G04284 Aquilegia oxysepala
Aqoxy5G00001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4JTK6F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K1GJGU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R7E06Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VI5MD4 Arachis hypogaea
AT5G36700 Arabidopsis thaliana
AT5G36790 Arabidopsis thaliana
AT5G47760 Arabidopsis thaliana
ATR0743G269 Amborella trichopoda
ATR0751G242 Amborella trichopoda
Atru.chr11.2368 Acer truncatum
Atru.chr12.1653 Acer truncatum
AUR62000276 Chenopodium quinoa
AUR62006623 Chenopodium quinoa
AUR62015186 Chenopodium quinoa
AUR62021804 Chenopodium quinoa
AUR62044273 Chenopodium quinoa
BcaB06g27035 Brassica carinata
BcaB07g30760 Brassica carinata
BcaB07g30761 Brassica carinata
BcaC02g09528 Brassica carinata
BcaC04g21604 Brassica carinata
BolC4t25960H Brassica oleracea
BolC9t55858H Brassica oleracea
BraA04t16699Z Brassica rapa
BraA09t37924Z Brassica rapa
C04p43790 Brassica napus
C09p29950 Brassica napus
CAN.G1263.1 Capsicum annuum
CAN.G321.12 Capsicum annuum
CAN.G676.36 Capsicum annuum
CANSAT54G1998 Cannabis sativa
CANSAT56G2632 Cannabis sativa
CANSAT56G3242 Cannabis sativa
CARHR173560 Cardamine hirsuta
CARHR216390 Cardamine hirsuta
Carub.0007s3204 Capsella rubella
Carub.0008s0002 Capsella rubella
Ca_00771_v3 Cicer arietinum L.
Ca_08016_v3 Cicer arietinum L.
CBR_g19602 Chara braunii
CBR_g39955 Chara braunii
CBR_g50628 Chara braunii
Cc09_g00230 Coffea canephora
Cc09_g04090 Coffea canephora
CDE08G0427 Ceratophyllum demersum
Cfa000021 Carpinus fangiana
Cfa006217 Carpinus fangiana
Ciclev10012021m.g Citrus clementina
Ciclev10016051m.g Citrus clementina
CiPaw.07G085400 Carya illinoinensis
CiPaw.09G110000 Carya illinoinensis
CiPaw.09G110300 Carya illinoinensis
ClCG01G021150 Citrullus lanatus
ClCG03G010570 Citrullus lanatus
COL.COLO4_28587 Corchorus olitorius
COL.COLO4_31948 Corchorus olitorius
COL.COLO4_31949 Corchorus olitorius
COL.COLO4_31971 Corchorus olitorius
COL.COLO4_32079 Corchorus olitorius
Cpa.g.sc27.211 Carica papaya
Cpa.g.sc88.41 Carica papaya
Cre03.g168700 Chlamydomonas reinhardtii
Cre06.g271400 Chlamydomonas reinhardtii
Cre10.g438100 Chlamydomonas reinhardtii
CsaV3_1G044450 Cucumis sativus L.
CsaV3_6G048160 Cucumis sativus L.
CSS0038605 Camellia sinensis var. sinensis
CSS0045506 Camellia sinensis var. sinensis
DCAR_027537 Daucus carota
DCAR_030830 Daucus carota
Dinv01387 Davidia involucrata
Dinv07145 Davidia involucrata
Duzib177G0841 Durio zibethinus
Duzib192G0754 Durio zibethinus
ECA232G4089 Erigeron canadensis
ECA248G2708 Erigeron canadensis
EL10Ac4g10020 Beta vulgaris
EL10Ac8g20274 Beta vulgaris
Eucgr.B01439 Eucalyptus grandis
Eucgr.E03837 Eucalyptus grandis
Eucgr.E03838 Eucalyptus grandis
Eucgr.E03839 Eucalyptus grandis
Eucgr.L02395 Eucalyptus grandis
FAN02G4292 Fragaria x ananassa
FAN09G1041 Fragaria x ananassa
FAN14G5027 Fragaria x ananassa
FAN21G1539 Fragaria x ananassa
FAN25G2029 Fragaria x ananassa
FvH4_3g00250 Fragaria vesca
FvH4_6g00110 Fragaria vesca
Glyma.09G015500 Glycine max
Glyma.09G247900 Glycine max
Glyma.15G121300 Glycine max
Glyma.18G244900 Glycine max
Gohir.A02G108400 Gossypium hirsutum
Gohir.A06G203300 Gossypium hirsutum
Gohir.D03G072100 Gossypium hirsutum
Gohir.D06G218400 Gossypium hirsutum
Gorai.003G088000 Gossypium raimondii
Gorai.010G247900 Gossypium raimondii
GSVIVG01003477001 Vitis vinifera
GSVIVG01005385001 Vitis vinifera
HanXRQChr01g0003501 Helianthus annuus
HanXRQChr05g0142961 Helianthus annuus
Haze_04604 Corylus avellana
Haze_07038 Corylus avellana
Haze_11569 Corylus avellana
Haze_11570 Corylus avellana
Haze_27060 Corylus avellana
Hma1.2p1_0394F.1_g143569 Hydrangea macrophylla
Hma1.2p1_0394F.1_g143590 Hydrangea macrophylla
Hma1.2p1_0620F.1_g190530 Hydrangea macrophylla
HPP92_013585 Vanilla planifolia
HPP92_026389 Vanilla planifolia
Hund21929 Selenicereus undatus
Lalb_Chr01g0020621 Lupinus albus
Lalb_Chr03g0038041 Lupinus albus
Lalb_Chr15g0088301 Lupinus albus
Lj1A1248G38 Lonicera japonica
Lj1A1248T42 Lonicera japonica
Lj1g0002446 Lotus japonicus
Lj6g0027270 Lotus japonicus
Lj8C197G11 Lonicera japonica
Lsat_1_v5_gn_0_14580 Lactuca sativa
Lsat_1_v5_gn_1_130260 Lactuca sativa
Lsat_1_v5_gn_2_46441 Lactuca sativa
Lsat_1_v5_gn_3_36780 Lactuca sativa
Lsat_1_v5_gn_4_167821 Lactuca sativa
Manes.08G076300 Manihot esculenta
Manes.13G001050 Manihot esculenta
Mapoly0002s0250 Marchantia polymorpha
Mapoly0002s0251 Marchantia polymorpha
Mapoly0061s0103 Marchantia polymorpha
MBI08_g33251_MAGBIO Magnolia biondii
MBI15_g05555_MAGBIO Magnolia biondii
MCO04G424 Micromonas commoda
MCO13G459 Micromonas commoda
MD04G1248400 Malus domestica
MD10G1340000 Malus domestica
MD12G1262300 Malus domestica
Medtr2g027270 Medicago truncatula
Medtr7g080530 Medicago truncatula
MELO3C008001.2 Cucumis melo
MELO3C010045.2 Cucumis melo
Migut.F01845 Erythranthe guttata
Migut.O00740 Erythranthe guttata
MSTRG.16060 Avicennia marina
MSTRG.338 Avicennia marina
Nitab4.5_0000147g0180 Nicotiana tabacum
Nitab4.5_0001003g0100 Nicotiana tabacum
Nitab4.5_0010199g0020 Nicotiana tabacum
Nitab4.5_0011822g0010 Nicotiana tabacum
Nn1g07763 Nelumbo nucifera
Nn7g37668 Nelumbo nucifera
Oeu022387.1 Olea europaea
Oeu022388.1 Olea europaea
Oeu062039.1 Olea europaea
Os04g0490800 Oryza sativa ssp. japonica
Os09g0261300 Oryza sativa ssp. japonica
Os12g0420000 Oryza sativa ssp. japonica
Peaxi162Scf00254g00147 Petunia axillaris
Peaxi162Scf00811g00452 Petunia axillaris
PGR042G1046 Punica granatum
PGR042G1060 Punica granatum
PGR119G0210 Punica granatum
PGSC0003DMG400016181 Solanum tuberosum
PGSC0003DMG401019736 Solanum tuberosum
Phvul.006G136400 Phaseolus vulgaris
Phvul.008G051700 Phaseolus vulgaris
Potri.008G077400 Populus trichocarpa
Potri.010G180400 Populus trichocarpa
Potri.016G004200 Populus trichocarpa
Pp3c14_20830 Physcomitrium patens
Pp3c19_8840 Physcomitrium patens
Pp3c2_2710 Physcomitrium patens
PRCOL_00001590 Prasinoderma coloniale
PRCOL_00003834 Prasinoderma coloniale
Prupe.1G318300 Prunus persica
Prupe.2G215400 Prunus persica
Prupe.4G002800 Prunus persica
Prupe.6G364700 Prunus persica
Prupe.8G237000 Prunus persica
Psat1g173120 Pisum sativum
Psat3g101800 Pisum sativum
PSO210G4534 Papaver somniferum
PSO528G0239 Papaver somniferum
PSO832G3012 Papaver somniferum
QL01p050972 Quercus lobata
QL01p051002 Quercus lobata
QL05p066733 Quercus lobata
RcHm_v2.0_Chr3g0447461 Rosa chinensis
RcHm_v2.0_Chr5g0000341 Rosa chinensis
Rhsim02G0089800 Rhododendron simsii
Rhsim05G0164500 Rhododendron simsii
Sabra10G0138400 Salix brachista
Sabra16G0009000 Salix brachista
SalBow3G2489 Salvia bowleyana
SalBow8G0715 Salvia bowleyana
SalBow8G2794 Salvia bowleyana
Sc05g0009890 Simmondsia chinensis
Sc16g0010620 Simmondsia chinensis
Sc18g0006190 Simmondsia chinensis
Sed0009306 Sechium edule
Sed0012279 Sechium edule
SEGI_02137 Sequoiadendron giganteum
SEGI_16193 Sequoiadendron giganteum
SEGI_37790 Sequoiadendron giganteum
SGA_v2.0_scaffold186G40135 Striga asiatica
SGA_v2.0_scaffold340G49310 Striga asiatica
SHI24428 Sapria himalayana
SMO171G0035 Selaginella moellendorffii
SMO340G0270 Selaginella moellendorffii
Solyc04g015150.4 Solanum lycopersicum
Solyc11g008620.2 Solanum lycopersicum
Sopen04g007190 Solanum pennellii
Sopen11g004410 Solanum pennellii
Sp2g12460 Schrenkiella parvula
Sp7g05690 Schrenkiella parvula
TAR626G1002 Trochodendron aralioides
TAR633G1961 Trochodendron aralioides
THA.LOC104805692 Tarenaya hassleriana
THA.LOC104824388 Tarenaya hassleriana
Thecc.05G110500 Theobroma cacao
Thecc.05G110600 Theobroma cacao
Thecc.06G242100 Theobroma cacao
Thhalv10000974m.g Eutrema salsugineum
Thhalv10027809m.g Eutrema salsugineum
TPR.G17531 Trifolium pratense
TPR.G22500 Trifolium pratense
TPR.G22754 Trifolium pratense
TPR.G31016 Trifolium pratense
TWI18G0357 Tripterygium wilfordii
TWI63G1815 Tripterygium wilfordii
unitig_52.g17237 Utricularia gibba
vmacro15725 Vaccinium macrocarpon
VMungo1383G0885 Vigna mungo
Zm00001eb064870 Zea mays
Zm00001eb425540 Zea mays

User provided reference genes

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