Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p03130 Brassica napus
A03p63550 Brassica napus
A07p03650 Brassica napus
A08p21870 Brassica napus
Aa31LG6G12430 Aethionema arabicum
Aa31LG8G14710 Aethionema arabicum
Aa31sc471G10 Aethionema arabicum
Aa31sc54G10 Aethionema arabicum
Aa31sc77G120 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2824 Anthoceros agrestis
Actinidia26322 Actinidia chinensis
Actinidia32002 Actinidia chinensis
Actinidia38844 Actinidia chinensis
Ah.09g233880 Amaranthus hybridus
AL3G50270 Arabidopsis lyrata
AL7G15720 Arabidopsis lyrata
Aqoxy3G01889 Aquilegia oxysepala
Aqoxy3G01890 Aquilegia oxysepala
Aqoxy3G01891 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.24ZDA8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AX1616 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JT7AJ7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q48R37 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QPZE1Z Arachis hypogaea
AT2G17390 Arabidopsis thaliana
AT4G35450 Arabidopsis thaliana
ATR0796G047 Amborella trichopoda
Atru.chr8.1048 Acer truncatum
AUR62012848 Chenopodium quinoa
AUR62021812 Chenopodium quinoa
BcaB03g12412 Brassica carinata
BcaB03g14919 Brassica carinata
BcaB03g16501 Brassica carinata
BcaC01g00495 Brassica carinata
BcaC06g36283 Brassica carinata
BcaNung00593 Brassica carinata
BcaNung02391 Brassica carinata
BcaNung03629 Brassica carinata
BcaNung06458 Brassica carinata
BolC1t00335H Brassica oleracea
BolC3t20310H Brassica oleracea
BolC7t40992H Brassica oleracea
BraA01t00297Z Brassica rapa
BraA03t15425Z Brassica rapa
BraA07t28154Z Brassica rapa
BraA08t34140Z Brassica rapa
C01p03480 Brassica napus
C03p80670 Brassica napus
C07p05880 Brassica napus
C07p61140 Brassica napus
CAN.G1577.22 Capsicum annuum
CANSAT25G1626 Cannabis sativa
CARHR107550 Cardamine hirsuta
CARHR243760 Cardamine hirsuta
Carub.0003s3144 Capsella rubella
Carub.0007s0488 Capsella rubella
Ca_14122_v3 Cicer arietinum L.
CBR_g37530 Chara braunii
Cc02_g22490 Coffea canephora
CDE04G0411 Ceratophyllum demersum
CDE06G1931 Ceratophyllum demersum
CDE06G2216 Ceratophyllum demersum
CDE07G1191 Ceratophyllum demersum
Ciclev10012463m.g Citrus clementina
CiPaw.05G096200 Carya illinoinensis
CiPaw.06G112500 Carya illinoinensis
ClCG02G003120 Citrullus lanatus
ClCG02G010650 Citrullus lanatus
COL.COLO4_38062 Corchorus olitorius
Cpa.g.sc63.43 Carica papaya
Cre03.g173350 Chlamydomonas reinhardtii
Cre16.g674300 Chlamydomonas reinhardtii
CsaV3_6G009840 Cucumis sativus L.
CsaV3_7G002290 Cucumis sativus L.
CSS0015863 Camellia sinensis var. sinensis
CSS0032421 Camellia sinensis var. sinensis
DCAR_001821 Daucus carota
DCAR_029251 Daucus carota
DCAR_029252 Daucus carota
Dinv41997 Davidia involucrata
Duzib052G0449 Durio zibethinus
Duzib132G1137 Durio zibethinus
Duzib248G0051 Durio zibethinus
ECA234G3511 Erigeron canadensis
ECA240G4174 Erigeron canadensis
EL10Ac8g20265 Beta vulgaris
Eucgr.H01461 Eucalyptus grandis
Eucgr.I01557 Eucalyptus grandis
FAN15G2193 Fragaria x ananassa
FAN24G3453 Fragaria x ananassa
FAN27G0632 Fragaria x ananassa
FAN27G2173 Fragaria x ananassa
FvH4_2g17270 Fragaria vesca
Glyma.04G116500 Glycine max
Glyma.06G320200 Glycine max
Gohir.A03G168800 Gossypium hirsutum
Gohir.A04G110400 Gossypium hirsutum
Gohir.A12G011600 Gossypium hirsutum
Gohir.A13G063600 Gossypium hirsutum
Gohir.D02G192000 Gossypium hirsutum
Gohir.D04G150700 Gossypium hirsutum
Gohir.D12G011740 Gossypium hirsutum
Gohir.D12G012000 Gossypium hirsutum
Gohir.D13G058300 Gossypium hirsutum
Gorai.005G214800 Gossypium raimondii
Gorai.008G012100 Gossypium raimondii
Gorai.012G137300 Gossypium raimondii
Gorai.013G065700 Gossypium raimondii
GSVIVG01023835001 Vitis vinifera
HanXRQChr03g0071741 Helianthus annuus
HanXRQChr09g0246081 Helianthus annuus
HanXRQChr10g0290681 Helianthus annuus
HanXRQChr10g0290711 Helianthus annuus
HanXRQChr10g0301361 Helianthus annuus
HanXRQChr15g0493251 Helianthus annuus
HanXRQChr16g0513931 Helianthus annuus
Haze_02479 Corylus avellana
Hma1.2p1_0271F.1_g108610 Hydrangea macrophylla
Hma1.2p1_0625F.1_g191460 Hydrangea macrophylla
Hma1.2p1_1601F.1_g293190 Hydrangea macrophylla
Hma1.2p1_1765F.1_g301470 Hydrangea macrophylla
HPP92_003448 Vanilla planifolia
HPP92_016569 Vanilla planifolia
HPP92_024679 Vanilla planifolia
HPP92_028337 Vanilla planifolia
Hund04400 Selenicereus undatus
Hund04402 Selenicereus undatus
Hund22926 Selenicereus undatus
Hund22927 Selenicereus undatus
Hund23013 Selenicereus undatus
Lalb_Chr04g0264241 Lupinus albus
Lalb_Chr04g0264251 Lupinus albus
Lalb_Chr04g0264261 Lupinus albus
Lalb_Chr15g0079821 Lupinus albus
Lalb_Chr15g0079831 Lupinus albus
Lalb_Chr15g0079841 Lupinus albus
Lalb_Chr18g0048741 Lupinus albus
Lj3g0011769 Lotus japonicus
Lj5A252T46 Lonicera japonica
Lj8C51G14 Lonicera japonica
Lj9C306G15 Lonicera japonica
Lsat_1_v5_gn_5_109261 Lactuca sativa
Lsat_1_v5_gn_7_77580 Lactuca sativa
Lsat_1_v5_gn_8_23521 Lactuca sativa
Lsat_1_v5_gn_9_118940 Lactuca sativa
Manes.15G112200 Manihot esculenta
Manes.15G112400 Manihot esculenta
Mapoly0142s0007 Marchantia polymorpha
MBI15_g33456_MAGBIO Magnolia biondii
MCO04G465 Micromonas commoda
MD05G1151600 Malus domestica
MD10G1145800 Malus domestica
Medtr1g054540 Medicago truncatula
Medtr1g054550 Medicago truncatula
Medtr1g054600 Medicago truncatula
Medtr1g054620 Medicago truncatula
Medtr3g009280 Medicago truncatula
Medtr3g113040 Medicago truncatula
Medtr3g114110 Medicago truncatula
Medtr3g115660 Medicago truncatula
Medtr4g116930 Medicago truncatula
Medtr6g034405 Medicago truncatula
MELO3C013470.2 Cucumis melo
MELO3C024173.2 Cucumis melo
Migut.B00837 Erythranthe guttata
Migut.N01043 Erythranthe guttata
MSTRG.27844 Avicennia marina
MSTRG.5230 Avicennia marina
Nitab4.5_0000816g0020 Nicotiana tabacum
Nitab4.5_0001706g0040 Nicotiana tabacum
Nitab4.5_0003344g0010 Nicotiana tabacum
Nitab4.5_0005103g0030 Nicotiana tabacum
Nn3g16166 Nelumbo nucifera
Oeu008893.2 Olea europaea
Oeu033124.1 Olea europaea
Os03g0851700 Oryza sativa ssp. japonica
Os08g0539600 Oryza sativa ssp. japonica
Os09g0513000 Oryza sativa ssp. japonica
Peaxi162Scf00003g03824 Petunia axillaris
Peaxi162Scf00011g00428 Petunia axillaris
PGR042G1728 Punica granatum
PGR142G1892 Punica granatum
PGSC0003DMG400024167 Solanum tuberosum
PGSC0003DMG401023760 Solanum tuberosum
Phvul.005G006400 Phaseolus vulgaris
Potri.004G210000 Populus trichocarpa
Potri.004G210100 Populus trichocarpa
Pp3c8_5560 Physcomitrium patens
Pp3c8_5590 Physcomitrium patens
Pp3c8_5610 Physcomitrium patens
Pp3c8_5700 Physcomitrium patens
Pp3c8_5730 Physcomitrium patens
PRCOL_00004933 Prasinoderma coloniale
Prupe.8G184200 Prunus persica
Psat2g171960 Pisum sativum
Psat5g231000 Pisum sativum
Psat7g022800 Pisum sativum
PSO017G2663 Papaver somniferum
PSO017G4879 Papaver somniferum
PSO063G4288 Papaver somniferum
PSO063G4782 Papaver somniferum
PSO104G0092 Papaver somniferum
PSO104G0109 Papaver somniferum
PSO104G0166 Papaver somniferum
PSO170G3342 Papaver somniferum
PSO170G3466 Papaver somniferum
PSO478G5186 Papaver somniferum
QL11p057171 Quercus lobata
QL11p057597 Quercus lobata
RcHm_v2.0_Chr6g0281771 Rosa chinensis
Rhsim05G0044300 Rhododendron simsii
Sabra04G0141700 Salix brachista
Sabra04G0141800 Salix brachista
SalBow5G1968 Salvia bowleyana
SalBow6G2707 Salvia bowleyana
Sc18g0004140 Simmondsia chinensis
Sc18g0004160 Simmondsia chinensis
Sed0002453 Sechium edule
Sed0012003 Sechium edule
Sed0015707 Sechium edule
SEGI_04196 Sequoiadendron giganteum
SEGI_09516 Sequoiadendron giganteum
SEGI_35126 Sequoiadendron giganteum
SEGI_36740 Sequoiadendron giganteum
SGA_v2.0_scaffold145G36073 Striga asiatica
SGA_v2.0_scaffold1G00307 Striga asiatica
SMO228G0133 Selaginella moellendorffii
Solyc01g104170.3 Solanum lycopersicum
Solyc10g024330.3 Solanum lycopersicum
Solyc10g024340.2 Solanum lycopersicum
Sopen01g046610 Solanum pennellii
Sopen09g009490 Solanum pennellii
Sp3g30720 Schrenkiella parvula
Sp7g33220 Schrenkiella parvula
TAR623G1398 Trochodendron aralioides
TAR625G0581 Trochodendron aralioides
THA.LOC104804301 Tarenaya hassleriana
THA.LOC104807416 Tarenaya hassleriana
Thecc.02G150200 Theobroma cacao
Thhalv10005721m.g Eutrema salsugineum
Thhalv10022709m.g Eutrema salsugineum
Thhalv10025639m.g Eutrema salsugineum
TPR.G16696 Trifolium pratense
TPR.G5406 Trifolium pratense
TWI31G0290 Tripterygium wilfordii
TWI75G1253 Tripterygium wilfordii
unitig_22.g6117 Utricularia gibba
unitig_749.g14124 Utricularia gibba
vmacro10879 Vaccinium macrocarpon
VMungo1080G1192 Vigna mungo
Zm00001eb064650 Zea mays
Zm00001eb198300 Zea mays
Zm00001eb318200 Zea mays

User provided reference genes

Program Settings