Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p39610 Brassica napus
A08p31740 Brassica napus
A09p61610 Brassica napus
Aa31LG1G60 Aethionema arabicum
Aa31LG4G4080 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1681 Anthoceros agrestis
Actinidia14924 Actinidia chinensis
Actinidia16686 Actinidia chinensis
Actinidia18916 Actinidia chinensis
Actinidia35103 Actinidia chinensis
Ah.02g127700 Amaranthus hybridus
Ah.03g138460 Amaranthus hybridus
AL1G27130 Arabidopsis lyrata
AL2G33560 Arabidopsis lyrata
Aqoxy3G04035 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GC3M86 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N53U3E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SH0PSP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T6Y945 Arachis hypogaea
AT1G15060 Arabidopsis thaliana
AT1G73750 Arabidopsis thaliana
ATR0681G102 Amborella trichopoda
Atru.chr11.241 Acer truncatum
Atru.chr11.242 Acer truncatum
Atru.chr9.915 Acer truncatum
AUR62002809 Chenopodium quinoa
AUR62014117 Chenopodium quinoa
AUR62033792 Chenopodium quinoa
BcaB03g13076 Brassica carinata
BcaC07g38768 Brassica carinata
BolC6t39825H Brassica oleracea
BolC8t49326H Brassica oleracea
BolC8t52067H Brassica oleracea
BraA07t31510Z Brassica rapa
BraA08t35096Z Brassica rapa
BraA09t41533Z Brassica rapa
C06p47900 Brassica napus
C08p17010 Brassica napus
C08p45190 Brassica napus
CAN.G1129.47 Capsicum annuum
CAN.G25.14 Capsicum annuum
CAN.G396.13 Capsicum annuum
CAN.G396.5 Capsicum annuum
CAN.G4404.1 Capsicum annuum
CANSAT01G1364 Cannabis sativa
CANSAT80G0832 Cannabis sativa
CARHR015600 Cardamine hirsuta
CARHR066820 Cardamine hirsuta
Carub.0001s1483 Capsella rubella
Carub.0002s2050 Capsella rubella
Carub.0003s3267 Capsella rubella
Ca_06892_v3 Cicer arietinum L.
Ca_25469_v3 Cicer arietinum L.
CBR_g3157 Chara braunii
Cc04_g06830 Coffea canephora
Cc11_g09630 Coffea canephora
CDE04G0339 Ceratophyllum demersum
CDE06G1798 Ceratophyllum demersum
Cfa015834 Carpinus fangiana
Cfa019727 Carpinus fangiana
Ciclev10014599m.g Citrus clementina
Ciclev10019975m.g Citrus clementina
CiPaw.06G016300 Carya illinoinensis
CiPaw.15G135900 Carya illinoinensis
CiPaw.15G136100 Carya illinoinensis
ClCG01G005920 Citrullus lanatus
ClCG01G005930 Citrullus lanatus
ClCG04G010880 Citrullus lanatus
COL.COLO4_32135 Corchorus olitorius
Cpa.g.sc3.459 Carica papaya
Cpa.g.sc65.70 Carica papaya
Cre10.g451100 Chlamydomonas reinhardtii
CsaV3_1G006950 Cucumis sativus L.
CsaV3_5G028770 Cucumis sativus L.
CSS0011989 Camellia sinensis var. sinensis
CSS0035633 Camellia sinensis var. sinensis
DCAR_023222 Daucus carota
DCAR_023629 Daucus carota
Dinv12228 Davidia involucrata
Dinv16140 Davidia involucrata
Dinv31592 Davidia involucrata
Duzib205G2064 Durio zibethinus
Duzib248G1534 Durio zibethinus
ECA233G2273 Erigeron canadensis
ECA234G0240 Erigeron canadensis
EL10Ac6g14301 Beta vulgaris
Eucgr.B00830 Eucalyptus grandis
FAN04G0541 Fragaria x ananassa
FAN07G1177 Fragaria x ananassa
FAN08G3241 Fragaria x ananassa
FAN12G2551 Fragaria x ananassa
FAN12G2622 Fragaria x ananassa
FAN13G1046 Fragaria x ananassa
FAN17G1097 Fragaria x ananassa
FAN18G0288 Fragaria x ananassa
FAN22G0228 Fragaria x ananassa
FvH4_1g25681 Fragaria vesca
FvH4_4g26690 Fragaria vesca
FvH4_5g16710 Fragaria vesca
Glyma.07G097800 Glycine max
Glyma.09G180200 Glycine max
Glyma.10G270400 Glycine max
Glyma.20G120900 Glycine max
Gohir.A04G099900 Gossypium hirsutum
Gohir.A05G322300 Gossypium hirsutum
Gohir.A09G050100 Gossypium hirsutum
Gohir.A09G083500 Gossypium hirsutum
Gohir.D01G107032 Gossypium hirsutum
Gohir.D02G109466 Gossypium hirsutum
Gohir.D04G139100 Gossypium hirsutum
Gohir.D05G324400 Gossypium hirsutum
Gohir.D07G112866 Gossypium hirsutum
Gohir.D08G106101 Gossypium hirsutum
Gohir.D09G051300 Gossypium hirsutum
Gohir.D09G112032 Gossypium hirsutum
Gohir.D09G196600 Gossypium hirsutum
Gohir.D12G059200 Gossypium hirsutum
Gorai.002G093100 Gossypium raimondii
Gorai.002G131400 Gossypium raimondii
Gorai.004G112600 Gossypium raimondii
Gorai.005G124000 Gossypium raimondii
Gorai.006G058300 Gossypium raimondii
Gorai.009G348200 Gossypium raimondii
Gorai.012G124000 Gossypium raimondii
GSVIVG01008344001 Vitis vinifera
GSVIVG01011838001 Vitis vinifera
GSVIVG01025893001 Vitis vinifera
HanXRQChr16g0529161 Helianthus annuus
HanXRQChr16g0529171 Helianthus annuus
HanXRQChr17g0559801 Helianthus annuus
HanXRQChr17g0567201 Helianthus annuus
Haze_00657 Corylus avellana
Haze_18741 Corylus avellana
Hma1.2p1_1314F.1_g275020 Hydrangea macrophylla
HPP92_021341 Vanilla planifolia
Hund02351 Selenicereus undatus
Hund25035 Selenicereus undatus
Lalb_Chr02g0145731 Lupinus albus
Lalb_Chr21g0308721 Lupinus albus
Lalb_Chr22g0353221 Lupinus albus
Lj2g0004008 Lotus japonicus
Lj3A880T110 Lonicera japonica
Lj5A153G50 Lonicera japonica
Lj5g0010367 Lotus japonicus
Lsat_1_v5_gn_4_14820 Lactuca sativa
Lsat_1_v5_gn_8_142041 Lactuca sativa
Manes.05G120100 Manihot esculenta
Manes.14G107200 Manihot esculenta
MBI16_g38074_MAGBIO Magnolia biondii
MBI16_g39816_MAGBIO Magnolia biondii
MCO12G491 Micromonas commoda
MD06G1220800 Malus domestica
MD13G1035100 Malus domestica
MD16G1037000 Malus domestica
Medtr1g109500 Medicago truncatula
Medtr6g082420 Medicago truncatula
MELO3C002111.2 Cucumis melo
MELO3C005338.2 Cucumis melo
Migut.E00375 Erythranthe guttata
MSTRG.13558 Avicennia marina
MSTRG.2216 Avicennia marina
Nitab4.5_0000045g0370 Nicotiana tabacum
Nitab4.5_0000057g0020 Nicotiana tabacum
Nitab4.5_0000345g0050 Nicotiana tabacum
Nitab4.5_0001456g0090 Nicotiana tabacum
Nitab4.5_0005800g0020 Nicotiana tabacum
Nitab4.5_0006894g0060 Nicotiana tabacum
Nn3g17959 Nelumbo nucifera
Nn4g23962 Nelumbo nucifera
Oeu000989.1 Olea europaea
Oeu057749.1 Olea europaea
Oeu057753.1 Olea europaea
Oeu057758.1 Olea europaea
Os01g0692600 Oryza sativa ssp. japonica
Os08g0359300 Oryza sativa ssp. japonica
Peaxi162Scf00526g00821 Petunia axillaris
Peaxi162Scf00564g00517 Petunia axillaris
Peaxi162Scf00683g00327 Petunia axillaris
Peaxi162Scf00683g00328 Petunia axillaris
PGR083G1550 Punica granatum
PGR119G1760 Punica granatum
PGSC0003DMG400005668 Solanum tuberosum
PGSC0003DMG400005972 Solanum tuberosum
PGSC0003DMG400026880 Solanum tuberosum
Phvul.004G153400 Phaseolus vulgaris
Phvul.007G032266 Phaseolus vulgaris
Phvul.007G032332 Phaseolus vulgaris
Potri.008G124400 Populus trichocarpa
Potri.010G119700 Populus trichocarpa
Potri.012G053700 Populus trichocarpa
Pp3c6_12730 Physcomitrium patens
Pp3c8_17160 Physcomitrium patens
Prupe.1G317100 Prunus persica
Prupe.5G225200 Prunus persica
Psat1g035000 Pisum sativum
Psat6g224240 Pisum sativum
PSO063G4747 Papaver somniferum
PSO782G2575 Papaver somniferum
QL01p010709 Quercus lobata
QL01p010785 Quercus lobata
QL10p026767 Quercus lobata
RcHm_v2.0_Chr4g0425761 Rosa chinensis
RcHm_v2.0_Chr4g0434381 Rosa chinensis
RcHm_v2.0_Chr5g0055191 Rosa chinensis
RcHm_v2.0_Chr7g0179391 Rosa chinensis
Rhsim09G0103600 Rhododendron simsii
Rhsim12G0141300 Rhododendron simsii
Sabra08G0094100 Salix brachista
Sabra10G0090100 Salix brachista
Sabra12G0037500 Salix brachista
Sabra15G0041600 Salix brachista
SalBow8G0454 Salvia bowleyana
Sc04g0006000 Simmondsia chinensis
Sc12g0007510 Simmondsia chinensis
Sed0012171 Sechium edule
Sed0014158 Sechium edule
SEGI_33596 Sequoiadendron giganteum
SGA_v2.0_scaffold14G06911 Striga asiatica
SGA_v2.0_scaffold170G38805 Striga asiatica
SHI09864 Sapria himalayana
SMO165G0110 Selaginella moellendorffii
Solyc03g118850.4 Solanum lycopersicum
Solyc04g007450.4 Solanum lycopersicum
Solyc09g059670.4 Solanum lycopersicum
Sopen04g002510 Solanum pennellii
Sopen09g022920 Solanum pennellii
Sp1g13440 Schrenkiella parvula
Sp5g28940 Schrenkiella parvula
TAR365G1008 Trochodendron aralioides
TAR535G0004 Trochodendron aralioides
TAR629G2090 Trochodendron aralioides
THA.LOC104812153 Tarenaya hassleriana
THA.LOC104823959 Tarenaya hassleriana
Thecc.02G221500 Theobroma cacao
Thecc.03G043000 Theobroma cacao
Thhalv10007211m.g Eutrema salsugineum
Thhalv10018520m.g Eutrema salsugineum
Thhalv10019203m.g Eutrema salsugineum
TPR.G28410 Trifolium pratense
TPR.G28412 Trifolium pratense
TPR.G30989 Trifolium pratense
TPR.G4929 Trifolium pratense
TWI15G0779 Tripterygium wilfordii
TWI75G0364 Tripterygium wilfordii
unitig_52.g17129 Utricularia gibba
vmacro10602 Vaccinium macrocarpon
vmacro16432 Vaccinium macrocarpon
VMungo0464G1318 Vigna mungo
VMungo0720G2932 Vigna mungo
Zm00001eb038480 Zea mays
Zm00001eb042900 Zea mays
Zm00001eb050580 Zea mays
Zm00001eb156070 Zea mays

User provided reference genes

Program Settings