Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p27200 Brassica napus
Aa31LG2G11820 Aethionema arabicum
Aa31LG5G15770 Aethionema arabicum
Actinidia05709 Actinidia chinensis
Actinidia19794 Actinidia chinensis
Actinidia23625 Actinidia chinensis
Actinidia23626 Actinidia chinensis
Actinidia23627 Actinidia chinensis
Actinidia23628 Actinidia chinensis
Ah.04g154330 Amaranthus hybridus
Ah.06g189230 Amaranthus hybridus
Ah.06g189240 Amaranthus hybridus
AL1G65330 Arabidopsis lyrata
AL3G15700 Arabidopsis lyrata
Aqoxy2G03303 Aquilegia oxysepala
Aqoxy2G03304 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1178KH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.80IGKV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9IJ3ID Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C0H73X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y16X78 Arachis hypogaea
AT1G54870 Arabidopsis thaliana
AT3G05260 Arabidopsis thaliana
ATR0626G156 Amborella trichopoda
Atru.chr4.2532 Acer truncatum
Atru.chr4.2533 Acer truncatum
AUR62000839 Chenopodium quinoa
AUR62000840 Chenopodium quinoa
AUR62005133 Chenopodium quinoa
AUR62005134 Chenopodium quinoa
AUR62038067 Chenopodium quinoa
AUR62038071 Chenopodium quinoa
AUR62038074 Chenopodium quinoa
AUR62038177 Chenopodium quinoa
AUR62038196 Chenopodium quinoa
AUR62038197 Chenopodium quinoa
AUR62038198 Chenopodium quinoa
AUR62038199 Chenopodium quinoa
AUR62038200 Chenopodium quinoa
AUR62038201 Chenopodium quinoa
BcaB04g20149 Brassica carinata
BcaC05g30014 Brassica carinata
BcaC05g30141 Brassica carinata
BcaC09g49603 Brassica carinata
BolC1t03430H Brassica oleracea
BolC5t34853H Brassica oleracea
BraA01t02860Z Brassica rapa
C01p34590 Brassica napus
C05p61930 Brassica napus
CAN.G1077.20 Capsicum annuum
CANSAT54G0690 Cannabis sativa
CARHR056040 Cardamine hirsuta
CARHR079600 Cardamine hirsuta
Carub.0002s0856 Capsella rubella
Carub.0003s0451 Capsella rubella
Ca_09363_v3 Cicer arietinum L.
Ca_10105_v3 Cicer arietinum L.
Ca_21101_v3 Cicer arietinum L.
Ca_29415_v3 Cicer arietinum L.
CBR_g575 Chara braunii
Cc00_g15610 Coffea canephora
CDE01G0152 Ceratophyllum demersum
CDE12G0050 Ceratophyllum demersum
Ciclev10002055m.g Citrus clementina
Ciclev10003201m.g Citrus clementina
CiPaw.07G016600 Carya illinoinensis
CiPaw.07G016700 Carya illinoinensis
ClCG03G016920 Citrullus lanatus
ClCG03G016930 Citrullus lanatus
ClCG05G007430 Citrullus lanatus
COL.COLO4_05824 Corchorus olitorius
COL.COLO4_13484 Corchorus olitorius
COL.COLO4_20845 Corchorus olitorius
COL.COLO4_20846 Corchorus olitorius
Cpa.g.sc147.20 Carica papaya
Cpa.g.sc48.36 Carica papaya
Cpa.g.sc48.37 Carica papaya
Cre01.g005400 Chlamydomonas reinhardtii
Cre09.g399000 Chlamydomonas reinhardtii
Cre09.g399200 Chlamydomonas reinhardtii
CsaV3_1G039000 Cucumis sativus L.
DCAR_022182 Daucus carota
DCAR_029423 Daucus carota
Dinv23952 Davidia involucrata
Dinv40276 Davidia involucrata
Duzib128G1529 Durio zibethinus
Duzib147G0242 Durio zibethinus
EL10Ac4g09341 Beta vulgaris
EL10Ac6g13731 Beta vulgaris
EL10As3g23300 Beta vulgaris
Eucgr.B01992 Eucalyptus grandis
Eucgr.H04480 Eucalyptus grandis
FAN02G0913 Fragaria x ananassa
FAN02G3222 Fragaria x ananassa
FAN05G1790 Fragaria x ananassa
FAN05G4107 Fragaria x ananassa
FAN09G0228 Fragaria x ananassa
FAN14G4124 Fragaria x ananassa
FAN14G5405 Fragaria x ananassa
FAN17G1291 Fragaria x ananassa
FvH4_6g05651 Fragaria vesca
FvH4_6g05660 Fragaria vesca
FvH4_6g51450 Fragaria vesca
Glyma.03G238800 Glycine max
Glyma.03G238900 Glycine max
Glyma.03G241400 Glycine max
Glyma.07G258200 Glycine max
Glyma.10G155300 Glycine max
Glyma.19G238900 Glycine max
Glyma.20G233000 Glycine max
Gohir.A08G210500 Gossypium hirsutum
Gohir.A11G264166 Gossypium hirsutum
Gohir.D08G227300 Gossypium hirsutum
Gorai.004G241500 Gossypium raimondii
Gorai.007G296100 Gossypium raimondii
GSVIVG01000038001 Vitis vinifera
HanXRQChr04g0110291 Helianthus annuus
HanXRQChr12g0359511 Helianthus annuus
HanXRQChr12g0359591 Helianthus annuus
HanXRQChr12g0359661 Helianthus annuus
HanXRQChr12g0359671 Helianthus annuus
Haze_04206 Corylus avellana
Haze_27395 Corylus avellana
HPP92_021503 Vanilla planifolia
HPP92_021515 Vanilla planifolia
Hund07061 Selenicereus undatus
Hund22536 Selenicereus undatus
Lalb_Chr02g0148301 Lupinus albus
Lalb_Chr04g0260791 Lupinus albus
Lalb_Chr04g0260801 Lupinus albus
Lj1g0014702 Lotus japonicus
Lj4g0013400 Lotus japonicus
Lj5A548T7 Lonicera japonica
Lj5A551T13 Lonicera japonica
Lj5C547T2 Lonicera japonica
Lj5C551T0 Lonicera japonica
Lj5g0011157 Lotus japonicus
LjContig00141g0003903 Lotus japonicus
Lsat_1_v5_gn_5_148381 Lactuca sativa
Lsat_1_v5_gn_5_88260 Lactuca sativa
Lsat_1_v5_gn_5_88781 Lactuca sativa
Lsat_1_v5_gn_5_88821 Lactuca sativa
Lsat_1_v5_gn_5_88881 Lactuca sativa
Lsat_1_v5_gn_5_88901 Lactuca sativa
Lsat_1_v5_gn_5_88981 Lactuca sativa
Lsat_1_v5_gn_5_89061 Lactuca sativa
Manes.08G122200 Manihot esculenta
Manes.09G165800 Manihot esculenta
Manes.15G024850 Manihot esculenta
Manes.15G025100 Manihot esculenta
Manes.15G025200 Manihot esculenta
Mapoly0023s0059 Marchantia polymorpha
MD04G1206800 Malus domestica
MD12G1220600 Malus domestica
Medtr1g082760 Medicago truncatula
Medtr4g131740 Medicago truncatula
Medtr7g113650 Medicago truncatula
MELO3C006823.2 Cucumis melo
MELO3C015326.2 Cucumis melo
Migut.G00307 Erythranthe guttata
Migut.N02000 Erythranthe guttata
Nitab4.5_0002031g0020 Nicotiana tabacum
Nitab4.5_0003439g0010 Nicotiana tabacum
Nitab4.5_0005388g0100 Nicotiana tabacum
Nn1g02201 Nelumbo nucifera
Nn4g26229 Nelumbo nucifera
Oeu020988.1 Olea europaea
Oeu027736.1 Olea europaea
Oeu029307.1 Olea europaea
Oeu029688.1 Olea europaea
Oeu029689.1 Olea europaea
Oeu059241.1 Olea europaea
Os05g0140800 Oryza sativa ssp. japonica
Peaxi162Scf00037g00238 Petunia axillaris
PGR031G0442 Punica granatum
PGSC0003DMG400028608 Solanum tuberosum
Phvul.003G091300 Phaseolus vulgaris
Phvul.006G092800 Phaseolus vulgaris
Phvul.006G095500 Phaseolus vulgaris
Phvul.007G180800 Phaseolus vulgaris
Potri.008G149201 Populus trichocarpa
Potri.010G092400 Populus trichocarpa
Potri.013G023900 Populus trichocarpa
Potri.013G050700 Populus trichocarpa
Potri.019G023900 Populus trichocarpa
Pp3c18_12430 Physcomitrium patens
Pp3c26_12920 Physcomitrium patens
Pp3c5_14430 Physcomitrium patens
Prupe.6G327400 Prunus persica
Psat3g010640 Pisum sativum
Psat4g008400 Pisum sativum
Psat6g149560 Pisum sativum
PSO063G1722 Papaver somniferum
PSO063G2242 Papaver somniferum
PSO210G7182 Papaver somniferum
PSO782G5058 Papaver somniferum
PSO832G3283 Papaver somniferum
QL03p006508 Quercus lobata
RcHm_v2.0_Chr3g0454511 Rosa chinensis
RcHm_v2.0_Chr3g0454521 Rosa chinensis
RcHm_v2.0_Chr3g0454531 Rosa chinensis
Rhsim07G0182000 Rhododendron simsii
Sabra08G0113400 Salix brachista
SalBow3G3332 Salvia bowleyana
Sc01g0004020 Simmondsia chinensis
Sc06g0003330 Simmondsia chinensis
Sc13g0004140 Simmondsia chinensis
Sc13g0004150 Simmondsia chinensis
Sc15g0003820 Simmondsia chinensis
Sed0023737 Sechium edule
Sed0024571 Sechium edule
Sed0025543 Sechium edule
SEGI_11365 Sequoiadendron giganteum
SEGI_11620 Sequoiadendron giganteum
SEGI_12383 Sequoiadendron giganteum
SEGI_13939 Sequoiadendron giganteum
SEGI_16364 Sequoiadendron giganteum
SEGI_21842 Sequoiadendron giganteum
SEGI_25122 Sequoiadendron giganteum
SEGI_27810 Sequoiadendron giganteum
SEGI_33832 Sequoiadendron giganteum
SGA_v2.0_scaffold81G26076 Striga asiatica
SHI18198 Sapria himalayana
SMO367G0648 Selaginella moellendorffii
Solyc01g098850.3 Solanum lycopersicum
Sopen01g042390 Solanum pennellii
Sp3g04110 Schrenkiella parvula
SpUn0002_0650 Schrenkiella parvula
TAR362G0988 Trochodendron aralioides
THA.LOC104805870 Tarenaya hassleriana
THA.LOC104818683 Tarenaya hassleriana
Thecc.04G225100 Theobroma cacao
Thecc.04G225200 Theobroma cacao
Thecc.05G304900 Theobroma cacao
Thhalv10022134m.g Eutrema salsugineum
Thhalv10023627m.g Eutrema salsugineum
TPR.G13195 Trifolium pratense
TPR.G33201 Trifolium pratense
TPR.G37055 Trifolium pratense
TPR.G6061 Trifolium pratense
TWI31G0272 Tripterygium wilfordii
TWI38G1023 Tripterygium wilfordii
TWI56G1171 Tripterygium wilfordii
TWI56G1428 Tripterygium wilfordii
unitig_26.g9980 Utricularia gibba
unitig_749.g13977 Utricularia gibba
unitig_749.g13978 Utricularia gibba
vmacro05022 Vaccinium macrocarpon
vmacro15318 Vaccinium macrocarpon
VMungo0540G0441 Vigna mungo
VMungo0540G2489 Vigna mungo
VMungo0720G0369 Vigna mungo
VMungo1215G3262 Vigna mungo
Zm00001eb108670 Zea mays

User provided reference genes

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