Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p10140 Brassica napus
A01p22200 Brassica napus
A04p20750 Brassica napus
A07p41500 Brassica napus
Aa31LG4G6140 Aethionema arabicum
Aa31LG7G4600 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1325 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3904 Anthoceros agrestis
Actinidia00629 Actinidia chinensis
Actinidia20519 Actinidia chinensis
Actinidia21467 Actinidia chinensis
Actinidia32036 Actinidia chinensis
Actinidia39158 Actinidia chinensis
Ah.00g000740 Amaranthus hybridus
Ah.11g040060 Amaranthus hybridus
AL1G33040 Arabidopsis lyrata
AL2G36010 Arabidopsis lyrata
Aqoxy6G02093 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8ZA7SM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZPAF0L Arachis hypogaea
AT1G20200 Arabidopsis thaliana
AT1G75990 Arabidopsis thaliana
ATR0706G286 Amborella trichopoda
Atru.chr13.234 Acer truncatum
Atru.chr5.3381 Acer truncatum
AUR62037104 Chenopodium quinoa
AUR62042366 Chenopodium quinoa
BcaB03g12876 Brassica carinata
BcaC04g20302 Brassica carinata
BcaC07g39003 Brassica carinata
BcaC07g39026 Brassica carinata
BcaC07g39033 Brassica carinata
BcaC08g47092 Brassica carinata
BcaC08g47308 Brassica carinata
BcaNung03352 Brassica carinata
BolC6t40029H Brassica oleracea
BolC7t42784H Brassica oleracea
BolC7t42854H Brassica oleracea
BolC8t49612H Brassica oleracea
BolC8t49637H Brassica oleracea
BolC9t57395H Brassica oleracea
BraA02t08417Z Brassica rapa
BraA03t12988Z Brassica rapa
BraA07t31682Z Brassica rapa
C06p49910 Brassica napus
C07p22150 Brassica napus
C07p23180 Brassica napus
C08p19750 Brassica napus
C08p20020 Brassica napus
CAN.G588.90 Capsicum annuum
CAN.G588.91 Capsicum annuum
CANSAT25G0170 Cannabis sativa
CARHR020700 Cardamine hirsuta
CARHR069530 Cardamine hirsuta
Carub.0001s1973 Capsella rubella
Carub.0002s2288 Capsella rubella
Ca_15410_v3 Cicer arietinum L.
Ca_15472_v3 Cicer arietinum L.
CBR_g39761 Chara braunii
Cc04_g03370 Coffea canephora
Cc09_g09820 Coffea canephora
CDE10G0545 Ceratophyllum demersum
Cfa005261 Carpinus fangiana
Cfa024940 Carpinus fangiana
Ciclev10028313m.g Citrus clementina
CiPaw.05G083700 Carya illinoinensis
CiPaw.06G120800 Carya illinoinensis
ClCG02G003980 Citrullus lanatus
ClCG06G000440 Citrullus lanatus
COL.COLO4_17361 Corchorus olitorius
COL.COLO4_26099 Corchorus olitorius
Cpa.g.sc20.101 Carica papaya
Cpa.g.sc26.279 Carica papaya
Cre06.g275650 Chlamydomonas reinhardtii
CsaV3_6G006240 Cucumis sativus L.
CsaV3_7G001120 Cucumis sativus L.
CSS0001298 Camellia sinensis var. sinensis
CSS0022749 Camellia sinensis var. sinensis
DCAR_022816 Daucus carota
Dinv14119 Davidia involucrata
Dinv39549 Davidia involucrata
Dinv41927 Davidia involucrata
Duzib041G0394 Durio zibethinus
Duzib041G0547 Durio zibethinus
Duzib093G1538 Durio zibethinus
Duzib116G0707 Durio zibethinus
Duzib132G0164 Durio zibethinus
ECA233G2788 Erigeron canadensis
ECA246G3931 Erigeron canadensis
EL10Ac1g02123 Beta vulgaris
Eucgr.F03722 Eucalyptus grandis
FAN15G1028 Fragaria x ananassa
FAN20G1830 Fragaria x ananassa
FAN24G2429 Fragaria x ananassa
FAN27G2652 Fragaria x ananassa
FvH4_2g15510 Fragaria vesca
Glyma.04G021500 Glycine max
Glyma.06G021600 Glycine max
Glyma.14G221600 Glycine max
Glyma.17G260500 Glycine max
Gohir.A01G169700 Gossypium hirsutum
Gohir.A03G205550 Gossypium hirsutum
Gohir.A12G036700 Gossypium hirsutum
Gohir.D01G160800 Gossypium hirsutum
Gohir.D12G035700 Gossypium hirsutum
Gorai.002G199200 Gossypium raimondii
Gorai.008G037000 Gossypium raimondii
GSVIVG01008761001 Vitis vinifera
GSVIVG01024003001 Vitis vinifera
HanXRQChr15g0477921 Helianthus annuus
HanXRQChr15g0477991 Helianthus annuus
HanXRQChr17g0544181 Helianthus annuus
Haze_02123 Corylus avellana
Haze_22686 Corylus avellana
Haze_26615 Corylus avellana
Hma1.2p1_0032F.1_g019290 Hydrangea macrophylla
Hma1.2p1_0163F.1_g072580 Hydrangea macrophylla
HPP92_020731 Vanilla planifolia
HPP92_022181 Vanilla planifolia
HPP92_022197 Vanilla planifolia
Hund01700 Selenicereus undatus
Hund05156 Selenicereus undatus
Hund05163 Selenicereus undatus
Lalb_Chr01g0008511 Lupinus albus
Lalb_Chr03g0033531 Lupinus albus
Lalb_Chr19g0131531 Lupinus albus
Lj1g0026889 Lotus japonicus
Lj5C177G7 Lonicera japonica
Lsat_1_v5_gn_3_47581 Lactuca sativa
Lsat_1_v5_gn_8_121601 Lactuca sativa
Lsat_1_v5_gn_8_123101 Lactuca sativa
Lsat_1_v5_gn_9_75341 Lactuca sativa
Manes.04G071700 Manihot esculenta
Manes.11G097100 Manihot esculenta
Mapoly0015s0013 Marchantia polymorpha
MBI17_g25602_MAGBIO Magnolia biondii
MBI17_g25603_MAGBIO Magnolia biondii
MCO09G616 Micromonas commoda
MD05G1123400 Malus domestica
MD08G1008900 Malus domestica
MD10G1126400 Malus domestica
Medtr1g026030 Medicago truncatula
Medtr1g107545 Medicago truncatula
Medtr3g114480 Medicago truncatula
MELO3C013344.2 Cucumis melo
MELO3C022496.2 Cucumis melo
Migut.B00069 Erythranthe guttata
Migut.E00245 Erythranthe guttata
MSTRG.16922 Avicennia marina
MSTRG.27632 Avicennia marina
Nitab4.5_0000079g0260 Nicotiana tabacum
Nitab4.5_0000283g0490 Nicotiana tabacum
Nitab4.5_0000369g0060 Nicotiana tabacum
Nitab4.5_0003698g0050 Nicotiana tabacum
Nn5g30817 Nelumbo nucifera
Oeu006691.1 Olea europaea
Oeu019917.1 Olea europaea
Oeu028972.1 Olea europaea
Os09g0541900 Oryza sativa ssp. japonica
Peaxi162Scf00078g01316 Petunia axillaris
Peaxi162Scf00362g00532 Petunia axillaris
Peaxi162Scf00362g00546 Petunia axillaris
Peaxi162Scf01324g00253 Petunia axillaris
PGR083G1040 Punica granatum
PGSC0003DMG401006167 Solanum tuberosum
PGSC0003DMG402006167 Solanum tuberosum
Phvul.001G003600 Phaseolus vulgaris
Phvul.009G019100 Phaseolus vulgaris
Potri.002G017700 Populus trichocarpa
Potri.002G017800 Populus trichocarpa
Potri.004G176600 Populus trichocarpa
Potri.009G136900 Populus trichocarpa
Pp3c17_19240 Physcomitrium patens
Pp3c1_37270 Physcomitrium patens
Pp3c1_37278 Physcomitrium patens
Pp3c2_4780 Physcomitrium patens
PRCOL_00005647 Prasinoderma coloniale
Prupe.1G360600 Prunus persica
Prupe.8G167300 Prunus persica
Psat0s3867g0040 Pisum sativum
Psat2g047280 Pisum sativum
Psat3g119800 Pisum sativum
Psat5g012520 Pisum sativum
Psat6g001400 Pisum sativum
Psat7g236400 Pisum sativum
Psat7g241120 Pisum sativum
PSO407G0159 Papaver somniferum
PSO541G6303 Papaver somniferum
PSO675G5151 Papaver somniferum
QL02p012612 Quercus lobata
QL11p050368 Quercus lobata
QL11p050459 Quercus lobata
QL11p050674 Quercus lobata
QL11p050682 Quercus lobata
QL11p051055 Quercus lobata
RcHm_v2.0_Chr6g0278511 Rosa chinensis
Rhsim05G0053900 Rhododendron simsii
Rhsim11G0192900 Rhododendron simsii
Sabra02G0014100 Salix brachista
Sabra04G0118600 Salix brachista
Sabra09G0106400 Salix brachista
SalBow1G6245 Salvia bowleyana
SalBow5G3315 Salvia bowleyana
SalBow5G5506 Salvia bowleyana
Sc15g0004720 Simmondsia chinensis
Sed0016354 Sechium edule
Sed0024991 Sechium edule
Sed0027800 Sechium edule
SEGI_21425 Sequoiadendron giganteum
SEGI_28864 Sequoiadendron giganteum
SEGI_38928 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05767 Striga asiatica
SGA_v2.0_scaffold199G41204 Striga asiatica
SGA_v2.0_scaffold32G13291 Striga asiatica
SGA_v2.0_scaffold80G25836 Striga asiatica
SGA_v2.0_scaffold80G25858 Striga asiatica
SHI05761 Sapria himalayana
SMO115G0004 Selaginella moellendorffii
SMO343G0061 Selaginella moellendorffii
SMO343G0110 Selaginella moellendorffii
Solyc01g111700.2 Solanum lycopersicum
Solyc01g111710.4 Solanum lycopersicum
Solyc04g056480.2 Solanum lycopersicum
Sopen01g053740 Solanum pennellii
Sopen01g053750 Solanum pennellii
Sopen04g025390 Solanum pennellii
Sopen10g014670 Solanum pennellii
Sp1g17970 Schrenkiella parvula
Sp5g31110 Schrenkiella parvula
TAR376G0703 Trochodendron aralioides
TAR381G0159 Trochodendron aralioides
TAR628G1735 Trochodendron aralioides
THA.LOC104811436 Tarenaya hassleriana
Thecc.02G057700 Theobroma cacao
Thecc.08G049700 Theobroma cacao
Thhalv10007479m.g Eutrema salsugineum
Thhalv10018459m.g Eutrema salsugineum
TPR.G26388 Trifolium pratense
TPR.G31025 Trifolium pratense
TPR.G38091 Trifolium pratense
TPR.G38098 Trifolium pratense
TPR.G38226 Trifolium pratense
TPR.G38239 Trifolium pratense
TWI31G1068 Tripterygium wilfordii
TWI56G1090 Tripterygium wilfordii
TWI75G0288 Tripterygium wilfordii
TWI79G1042 Tripterygium wilfordii
unitig_0.g35 Utricularia gibba
vmacro02283 Vaccinium macrocarpon
vmacro02284 Vaccinium macrocarpon
vmacro17316 Vaccinium macrocarpon
VMungo1309G2869 Vigna mungo
Zm00001eb039980 Zea mays
Zm00001eb202860 Zea mays

User provided reference genes

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