Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p38270 Brassica napus
A10p30860 Brassica napus
Aa31LG11G6360 Aethionema arabicum
Aa31LG3G4160 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4672 Anthoceros agrestis
Actinidia00650 Actinidia chinensis
Actinidia00983 Actinidia chinensis
Ah.08g209890 Amaranthus hybridus
Ah.16g104040 Amaranthus hybridus
AL3G22520 Arabidopsis lyrata
AL6G15220 Arabidopsis lyrata
Aqoxy4G02176 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4CZE72 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8N8WMT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D5X5FK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G4VVMC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SMM8KX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UC8GIG Arachis hypogaea
AT3G10980 Arabidopsis thaliana
AT5G05350 Arabidopsis thaliana
ATR0681G024 Amborella trichopoda
Atru.chr12.127 Acer truncatum
Atru.chr8.2357 Acer truncatum
AUR62006317 Chenopodium quinoa
AUR62012327 Chenopodium quinoa
AUR62022969 Chenopodium quinoa
AUR62026358 Chenopodium quinoa
AUR62029626 Chenopodium quinoa
BcaB06g25667 Brassica carinata
BcaC01g03669 Brassica carinata
BcaC05g29419 Brassica carinata
BcaC06g32243 Brassica carinata
BcaC06g32244 Brassica carinata
BcaC06g32245 Brassica carinata
BcaC06g32247 Brassica carinata
BolC9t59899H Brassica oleracea
BraA05t22619Z Brassica rapa
BraA10t45130Z Brassica rapa
C05p57080 Brassica napus
C09p71360 Brassica napus
CAN.G1230.2 Capsicum annuum
CANSAT35G0091 Cannabis sativa
CANSAT56G2681 Cannabis sativa
CARHR085560 Cardamine hirsuta
CARHR207900 Cardamine hirsuta
Carub.0003s1025 Capsella rubella
Carub.0003s1026 Capsella rubella
Carub.0006s0427 Capsella rubella
Ca_06012_v3 Cicer arietinum L.
Ca_15176_v3 Cicer arietinum L.
Ca_28624_v3 Cicer arietinum L.
Cc02_g05780 Coffea canephora
CDE04G1096 Ceratophyllum demersum
CDE04G2365 Ceratophyllum demersum
CDE04G2444 Ceratophyllum demersum
CDE12G0064 Ceratophyllum demersum
Cfa001241 Carpinus fangiana
Cfa017091 Carpinus fangiana
Ciclev10011383m.g Citrus clementina
Ciclev10031111m.g Citrus clementina
CiPaw.02G197100 Carya illinoinensis
CiPaw.09G216800 Carya illinoinensis
ClCG04G006560 Citrullus lanatus
ClCG11G005900 Citrullus lanatus
COL.COLO4_14430 Corchorus olitorius
COL.COLO4_25820 Corchorus olitorius
Cpa.g.sc19.104 Carica papaya
Cpa.g.sc33.103 Carica papaya
CsaV3_4G026940 Cucumis sativus L.
CsaV3_6G002100 Cucumis sativus L.
CSS0025941 Camellia sinensis var. sinensis
CSS0030399 Camellia sinensis var. sinensis
CSS0033017 Camellia sinensis var. sinensis
CSS0034085 Camellia sinensis var. sinensis
CSS0044153 Camellia sinensis var. sinensis
DCAR_011888 Daucus carota
DCAR_024796 Daucus carota
DCAR_028552 Daucus carota
DCAR_028897 Daucus carota
Dinv10563 Davidia involucrata
Dinv21806 Davidia involucrata
Dinv35429 Davidia involucrata
Duzib106G2069 Durio zibethinus
Duzib114G0265 Durio zibethinus
Duzib128G0552 Durio zibethinus
ECA232G1317 Erigeron canadensis
ECA232G3282 Erigeron canadensis
ECA233G0774 Erigeron canadensis
ECA238G4170 Erigeron canadensis
EL10Ac3g06099 Beta vulgaris
Eucgr.F01246 Eucalyptus grandis
Eucgr.K01264 Eucalyptus grandis
FAN01G2606 Fragaria x ananassa
FAN03G3035 Fragaria x ananassa
FAN06G2860 Fragaria x ananassa
FAN10G3389 Fragaria x ananassa
FvH4_7g25460 Fragaria vesca
FvH4_7g25461 Fragaria vesca
Glyma.02G260500 Glycine max
Glyma.03G041200 Glycine max
Glyma.11G234400 Glycine max
Glyma.18G022551 Glycine max
Glyma.18G022600 Glycine max
Gohir.A06G159600 Gossypium hirsutum
Gohir.D06G165400 Gossypium hirsutum
Gorai.010G192900 Gossypium raimondii
GSVIVG01030242001 Vitis vinifera
GSVIVG01032726001 Vitis vinifera
HanXRQChr07g0203561 Helianthus annuus
HanXRQChr08g0222511 Helianthus annuus
HanXRQChr09g0252171 Helianthus annuus
HanXRQChr14g0458821 Helianthus annuus
Haze_17318 Corylus avellana
Haze_21108 Corylus avellana
Hma1.2p1_2229F.1_g317540 Hydrangea macrophylla
Hma1.2p1_2300F.1_g319250 Hydrangea macrophylla
Hma1.2p1_3169F.1_g333560 Hydrangea macrophylla
HPP92_007559 Vanilla planifolia
HPP92_007560 Vanilla planifolia
HPP92_012009 Vanilla planifolia
HPP92_012010 Vanilla planifolia
HPP92_013851 Vanilla planifolia
HPP92_013865 Vanilla planifolia
HPP92_018097 Vanilla planifolia
HPP92_022850 Vanilla planifolia
HPP92_022851 Vanilla planifolia
HPP92_026129 Vanilla planifolia
HPP92_026130 Vanilla planifolia
Lalb_Chr04g0250331 Lupinus albus
Lalb_Chr10g0105371 Lupinus albus
Lalb_Chr17g0347021 Lupinus albus
Lalb_Chr23g0277181 Lupinus albus
Lj1P963T40 Lonicera japonica
Lj2C64G8 Lonicera japonica
Lj2C64T6 Lonicera japonica
Lj6g0009582 Lotus japonicus
LjContig00357g0010667 Lotus japonicus
Lsat_1_v5_gn_2_125901 Lactuca sativa
Lsat_1_v5_gn_8_13381 Lactuca sativa
Lsat_1_v5_gn_9_58621 Lactuca sativa
Manes.07G137000 Manihot esculenta
Manes.10G006700 Manihot esculenta
Mapoly0007s0207 Marchantia polymorpha
Mapoly0045s0153 Marchantia polymorpha
Mapoly0084s0076 Marchantia polymorpha
MBI19_g13968_MAGBIO Magnolia biondii
MD01G1161000 Malus domestica
MD04G1168700 Malus domestica
MD07G1229000 Malus domestica
MD12G1182300 Malus domestica
Medtr3g072040 Medicago truncatula
Medtr3g072070 Medicago truncatula
Medtr5g083740 Medicago truncatula
MELO3C019987.2 Cucumis melo
MELO3C026042.2 Cucumis melo
Migut.F00612 Erythranthe guttata
Migut.F01270 Erythranthe guttata
Nitab4.5_0000409g0010 Nicotiana tabacum
Nitab4.5_0012908g0010 Nicotiana tabacum
Nn2g13296 Nelumbo nucifera
Nn2g14826 Nelumbo nucifera
Nn6g33320 Nelumbo nucifera
Oeu008064.1 Olea europaea
Oeu008065.1 Olea europaea
Oeu017439.1 Olea europaea
Oeu017755.1 Olea europaea
Os01g0825900 Oryza sativa ssp. japonica
Os03g0299800 Oryza sativa ssp. japonica
Os05g0341900 Oryza sativa ssp. japonica
Os05g0474900 Oryza sativa ssp. japonica
Os11g0109633 Oryza sativa ssp. japonica
Os11g0109700 Oryza sativa ssp. japonica
Os12g0109633 Oryza sativa ssp. japonica
Os12g0109700 Oryza sativa ssp. japonica
Peaxi162Scf00304g00023 Petunia axillaris
PGR004G2649 Punica granatum
PGR142G0692 Punica granatum
PGSC0003DMG400006642 Solanum tuberosum
PGSC0003DMG400027587 Solanum tuberosum
Phvul.001G247800 Phaseolus vulgaris
Phvul.008G219400 Phaseolus vulgaris
Phvul.010G061400 Phaseolus vulgaris
Potri.008G075300 Populus trichocarpa
Potri.010G182100 Populus trichocarpa
Potri.016G129700 Populus trichocarpa
Pp3c14_180 Physcomitrium patens
Pp3c18_8110 Physcomitrium patens
Pp3c21_9620 Physcomitrium patens
Pp3c4_21070 Physcomitrium patens
Prupe.2G259100 Prunus persica
Prupe.6G287000 Prunus persica
Psat2g029120 Pisum sativum
Psat5g132480 Pisum sativum
PSO017G5617 Papaver somniferum
PSO170G4207 Papaver somniferum
QL07p033536 Quercus lobata
QL07p033551 Quercus lobata
QL08p064219 Quercus lobata
RcHm_v2.0_Chr1g0371421 Rosa chinensis
RcHm_v2.0_Chr1g0371431 Rosa chinensis
RcHm_v2.0_Chr5g0040071 Rosa chinensis
RcHm_v2.0_Chr6g0262441 Rosa chinensis
Rhsim02G0191500 Rhododendron simsii
Rhsim04G0123800 Rhododendron simsii
Rhsim09G0182100 Rhododendron simsii
Sabra08G0055800 Salix brachista
Sabra10G0139400 Salix brachista
Sabra16G0129000 Salix brachista
SalBow5G0375 Salvia bowleyana
SalBow5G0804 Salvia bowleyana
SalBow5G5128 Salvia bowleyana
Sc02g0000670 Simmondsia chinensis
Sc11g0005580 Simmondsia chinensis
Sed0000253 Sechium edule
Sed0005582 Sechium edule
Sed0007857 Sechium edule
SEGI_20323 Sequoiadendron giganteum
SGA_v2.0_scaffold60G20940 Striga asiatica
SMO230G0095 Selaginella moellendorffii
Solyc06g048780.1 Solanum lycopersicum
Solyc06g048790.1 Solanum lycopersicum
Solyc06g048810.4 Solanum lycopersicum
Sopen06g015020 Solanum pennellii
Sopen06g015070 Solanum pennellii
Sopen06g015080 Solanum pennellii
Sp3g09310 Schrenkiella parvula
Sp6g37480 Schrenkiella parvula
TAR362G0652 Trochodendron aralioides
TAR633G2504 Trochodendron aralioides
THA.LOC104816522 Tarenaya hassleriana
THA.LOC104823178 Tarenaya hassleriana
Thecc.10G007700 Theobroma cacao
Thecc.10G007800 Theobroma cacao
Thhalv10013241m.g Eutrema salsugineum
Thhalv10020437m.g Eutrema salsugineum
TPR.G20213 Trifolium pratense
TPR.G28643 Trifolium pratense
TWI53G1949 Tripterygium wilfordii
TWI53G2030 Tripterygium wilfordii
unitig_0.g1646 Utricularia gibba
unitig_748.g7003 Utricularia gibba
vmacro08919 Vaccinium macrocarpon
vmacro09987 Vaccinium macrocarpon
VMungo0251G1030 Vigna mungo
VMungo0331G1720 Vigna mungo
VMungo0647G0735 Vigna mungo
VMungo1383G2327 Vigna mungo
Zm00001eb013920 Zea mays
Zm00001eb149310 Zea mays
Zm00001eb194860 Zea mays
Zm00001eb286550 Zea mays
Zm00001eb351970 Zea mays
Zm00001eb404910 Zea mays
Zm00001eb404920 Zea mays

User provided reference genes

Program Settings