Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p32340 Brassica napus
A04p00220 Brassica napus
A09p54980 Brassica napus
Aa31LG10G17020 Aethionema arabicum
Aa31LG5G10930 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1162 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.319 Anthoceros agrestis
Actinidia04350 Actinidia chinensis
Actinidia21116 Actinidia chinensis
Actinidia24893 Actinidia chinensis
Actinidia24897 Actinidia chinensis
Actinidia25358 Actinidia chinensis
Actinidia30890 Actinidia chinensis
Actinidia38212 Actinidia chinensis
Ah.02g122860 Amaranthus hybridus
Ah.04g163050 Amaranthus hybridus
Ah.06g191750 Amaranthus hybridus
AL3G10330 Arabidopsis lyrata
AL5G46030 Arabidopsis lyrata
Aqoxy3G01481 Aquilegia oxysepala
Aqoxy5G00495 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5ZZ2UC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DZC4D8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HYDH72 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z26Q8L Arachis hypogaea
AT3G01800 Arabidopsis thaliana
AT3G63190 Arabidopsis thaliana
ATR0332G009 Amborella trichopoda
ATR0736G042 Amborella trichopoda
Atru.chr5.1447 Acer truncatum
Atru.chr6.2518 Acer truncatum
AUR62004807 Chenopodium quinoa
AUR62030702 Chenopodium quinoa
AUR62036023 Chenopodium quinoa
AUR62036342 Chenopodium quinoa
BcaC07g40796 Brassica carinata
BolC3t16208H Brassica oleracea
BolC4t24536H Brassica oleracea
BolC8t51367H Brassica oleracea
BraA03t12404Z Brassica rapa
BraA04t15741Z Brassica rapa
BraA09t40907Z Brassica rapa
C03p39390 Brassica napus
C04p30040 Brassica napus
C08p37890 Brassica napus
CANSAT25G2651 Cannabis sativa
CANSAT64G1802 Cannabis sativa
CARHR075130 Cardamine hirsuta
CARHR291760 Cardamine hirsuta
Carub.0003s0026 Capsella rubella
Carub.0005s2986 Capsella rubella
Ca_02814_v3 Cicer arietinum L.
Ca_09754_v3 Cicer arietinum L.
CBR_g26330 Chara braunii
CBR_g6325 Chara braunii
Cc01_g19420 Coffea canephora
Cc07_g00600 Coffea canephora
CDE04G1068 Ceratophyllum demersum
CDE05G1433 Ceratophyllum demersum
CDE10G0505 Ceratophyllum demersum
CDE10G0583 Ceratophyllum demersum
Cfa007253 Carpinus fangiana
Ciclev10016267m.g Citrus clementina
Ciclev10021605m.g Citrus clementina
CiPaw.03G052800 Carya illinoinensis
CiPaw.07G091200 Carya illinoinensis
ClCG07G000300 Citrullus lanatus
ClCG11G006950 Citrullus lanatus
COL.COLO4_09086 Corchorus olitorius
COL.COLO4_13738 Corchorus olitorius
Cpa.g.sc171.36 Carica papaya
Cpa.g.sc52.40 Carica papaya
Cre03.g156050 Chlamydomonas reinhardtii
Cre12.g545177 Chlamydomonas reinhardtii
CsaV3_6G001120 Cucumis sativus L.
CsaV3_6G037240 Cucumis sativus L.
CSS0019211 Camellia sinensis var. sinensis
CSS0026460 Camellia sinensis var. sinensis
CSS0036563 Camellia sinensis var. sinensis
DCAR_002952 Daucus carota
DCAR_012481 Daucus carota
DCAR_018421 Daucus carota
Dinv25675 Davidia involucrata
Dinv32928 Davidia involucrata
Dinv33361 Davidia involucrata
Dinv34761 Davidia involucrata
Duzib116G0203 Durio zibethinus
Duzib133G0090 Durio zibethinus
Duzib138G0722 Durio zibethinus
ECA232G0235 Erigeron canadensis
ECA247G3832 Erigeron canadensis
EL10Ac4g08965 Beta vulgaris
EL10Ac5g11831 Beta vulgaris
Eucgr.H01473 Eucalyptus grandis
Eucgr.I01663 Eucalyptus grandis
FAN05G2106 Fragaria x ananassa
FAN09G4532 Fragaria x ananassa
FAN14G1042 Fragaria x ananassa
FAN14G1951 Fragaria x ananassa
FAN15G3034 Fragaria x ananassa
FAN20G0194 Fragaria x ananassa
FAN24G2441 Fragaria x ananassa
FAN27G2768 Fragaria x ananassa
FvH4_2g23500 Fragaria vesca
FvH4_6g53070 Fragaria vesca
Glyma.02G147000 Glycine max
Glyma.10G026900 Glycine max
Glyma.13G194000 Glycine max
Glyma.15G232300 Glycine max
Gohir.A01G198200 Gossypium hirsutum
Gohir.A11G123200 Gossypium hirsutum
Gohir.D01G188400 Gossypium hirsutum
Gohir.D11G128400 Gossypium hirsutum
Gorai.002G231700 Gossypium raimondii
Gorai.007G137300 Gossypium raimondii
GSVIVG01001148001 Vitis vinifera
GSVIVG01001818001 Vitis vinifera
HanXRQChr09g0256061 Helianthus annuus
HanXRQChr10g0282441 Helianthus annuus
Haze_04702 Corylus avellana
Haze_14839 Corylus avellana
Hma1.2p1_0279F.1_g112480 Hydrangea macrophylla
Hma1.2p1_0279F.1_g112490 Hydrangea macrophylla
Hma1.2p1_0822F.1_g224490 Hydrangea macrophylla
HPP92_000813 Vanilla planifolia
HPP92_000817 Vanilla planifolia
HPP92_021402 Vanilla planifolia
HPP92_021444 Vanilla planifolia
HPP92_027105 Vanilla planifolia
Hund06893 Selenicereus undatus
Hund10839 Selenicereus undatus
Lalb_Chr02g0142741 Lupinus albus
Lalb_Chr10g0091221 Lupinus albus
Lalb_Chr19g0133011 Lupinus albus
Lalb_Chr21g0306441 Lupinus albus
Lj1A47G32 Lonicera japonica
Lj1g0012057 Lotus japonicus
Lj5g0007002 Lotus japonicus
Lju41C50T11 Lonicera japonica
Lsat_1_v5_gn_4_185421 Lactuca sativa
Lsat_1_v5_gn_5_169980 Lactuca sativa
Lsat_1_v5_gn_9_3581 Lactuca sativa
Manes.05G077000 Manihot esculenta
Manes.15G158300 Manihot esculenta
Manes.17G105700 Manihot esculenta
Mapoly0029s0063 Marchantia polymorpha
Mapoly0032s0090 Marchantia polymorpha
MBI04_g17682_MAGBIO Magnolia biondii
MBI04_g33420_MAGBIO Magnolia biondii
MBI11_g06759_MAGBIO Magnolia biondii
MCO01G389 Micromonas commoda
MCO11G254 Micromonas commoda
MD03G1263900 Malus domestica
MD09G1014900 Malus domestica
MD09G1015000 Malus domestica
MD11G1284600 Malus domestica
MD17G1015000 Malus domestica
Medtr1g072170 Medicago truncatula
Medtr8g040070 Medicago truncatula
MELO3C008210.2 Cucumis melo
MELO3C014391.2 Cucumis melo
Migut.D00302 Erythranthe guttata
Migut.K01448 Erythranthe guttata
MSTRG.21556 Avicennia marina
MSTRG.872 Avicennia marina
Nitab4.5_0000458g0100 Nicotiana tabacum
Nitab4.5_0000593g0140 Nicotiana tabacum
Nitab4.5_0002069g0020 Nicotiana tabacum
Nitab4.5_0003408g0100 Nicotiana tabacum
Nn1g02263 Nelumbo nucifera
Nn4g26274 Nelumbo nucifera
Nn8g40995 Nelumbo nucifera
Oeu035211.1 Olea europaea
Oeu037564.1 Olea europaea
Os04g0490400 Oryza sativa ssp. japonica
Os07g0570700 Oryza sativa ssp. japonica
Peaxi162Scf00398g00722 Petunia axillaris
Peaxi162Scf00641g00417 Petunia axillaris
PGR119G2533 Punica granatum
PGR142G0173 Punica granatum
PGSC0003DMG400019363 Solanum tuberosum
PGSC0003DMG400027323 Solanum tuberosum
Phvul.007G172400 Phaseolus vulgaris
Phvul.011G203500 Phaseolus vulgaris
Potri.001G333700 Populus trichocarpa
Potri.002G052400 Populus trichocarpa
Pp3c18_6870 Physcomitrium patens
Pp3c24_18680 Physcomitrium patens
PRCOL_00003660 Prasinoderma coloniale
PRCOL_00004280 Prasinoderma coloniale
Prupe.3G302800 Prunus persica
Prupe.8G240300 Prunus persica
Psat0s10305g0040 Pisum sativum
Psat0s5802g0040 Pisum sativum
Psat1g072160 Pisum sativum
Psat5g081960 Pisum sativum
Psat5g082120 Pisum sativum
Psat6g060640 Pisum sativum
Psat6g103880 Pisum sativum
PSO063G5562 Papaver somniferum
PSO210G7241 Papaver somniferum
PSO782G5011 Papaver somniferum
PSO832G4327 Papaver somniferum
QL02p043364 Quercus lobata
QL02p072006 Quercus lobata
QL12p021631 Quercus lobata
RcHm_v2.0_Chr2g0146101 Rosa chinensis
RcHm_v2.0_Chr2g0174851 Rosa chinensis
RcHm_v2.0_Chr6g0290971 Rosa chinensis
Rhsim01G0274400 Rhododendron simsii
Rhsim08G0044300 Rhododendron simsii
Sabra02G0042500 Salix brachista
Sabra16G0215000 Salix brachista
SalBow1G4882 Salvia bowleyana
SalBow4G0599 Salvia bowleyana
SalBow7G4805 Salvia bowleyana
Sc03g0006780 Simmondsia chinensis
Sc05g0005640 Simmondsia chinensis
Sed0009599 Sechium edule
Sed0026658 Sechium edule
SEGI_16540 Sequoiadendron giganteum
SEGI_25463 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35336 Striga asiatica
SHI03902 Sapria himalayana
SMO353G0086 Selaginella moellendorffii
Solyc09g065270.3 Solanum lycopersicum
Solyc11g007740.2 Solanum lycopersicum
Sopen09g027010 Solanum pennellii
Sopen11g003600 Solanum pennellii
Sp3g00260 Schrenkiella parvula
Sp5g00340 Schrenkiella parvula
TAR365G0978 Trochodendron aralioides
TAR371G0079 Trochodendron aralioides
TAR629G0668 Trochodendron aralioides
TAR633G1335 Trochodendron aralioides
THA.LOC104817555 Tarenaya hassleriana
THA.LOC104821118 Tarenaya hassleriana
Thecc.01G277900 Theobroma cacao
Thecc.05G115100 Theobroma cacao
Thecc.08G160500 Theobroma cacao
Thhalv10006162m.g Eutrema salsugineum
Thhalv10021359m.g Eutrema salsugineum
TPR.G22512 Trifolium pratense
TPR.G9128 Trifolium pratense
TWI23G0956 Tripterygium wilfordii
TWI56G0394 Tripterygium wilfordii
unitig_62.g23473 Utricularia gibba
unitig_899.g15521 Utricularia gibba
vmacro18331 Vaccinium macrocarpon
VMungo0720G0846 Vigna mungo
VMungo1127G0989 Vigna mungo
Zm00001eb174010 Zea mays
Zm00001eb260570 Zea mays
Zm00001eb425520 Zea mays

User provided reference genes

Program Settings