Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p07420 Brassica napus
Aa31LG11G1790 Aethionema arabicum
Aa31LG11G7110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.786 Anthoceros agrestis
Actinidia05407 Actinidia chinensis
Actinidia13622 Actinidia chinensis
Actinidia24773 Actinidia chinensis
Actinidia31658 Actinidia chinensis
Actinidia31886 Actinidia chinensis
Ah.15g090780 Amaranthus hybridus
Ah.16g106070 Amaranthus hybridus
Ah.16g106080 Amaranthus hybridus
AL6G16100 Arabidopsis lyrata
AL8G38390 Arabidopsis lyrata
Aqoxy2G01079 Aquilegia oxysepala
Aqoxy3G02667 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.L1TS6G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MC9PPH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T0XEU7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TWF2MJ Arachis hypogaea
AT5G06130 Arabidopsis thaliana
AT5G61670 Arabidopsis thaliana
ATR0665G252 Amborella trichopoda
ATR0820G182 Amborella trichopoda
Atru.chr6.1981 Acer truncatum
Atru.chr6.2005 Acer truncatum
Atru.chr8.1459 Acer truncatum
AUR62006216 Chenopodium quinoa
AUR62032087 Chenopodium quinoa
AUR62037002 Chenopodium quinoa
AUR62039180 Chenopodium quinoa
BcaB05g21682 Brassica carinata
BcaC04g23438 Brassica carinata
BcaNung01422 Brassica carinata
BolC2t06225H Brassica oleracea
BolC9t53743H Brassica oleracea
BraA02t04870Z Brassica rapa
BraA09t36396Z Brassica rapa
C02p02590 Brassica napus
C09p08330 Brassica napus
CAN.G297.1 Capsicum annuum
CAN.G397.81 Capsicum annuum
CANSAT56G1360 Cannabis sativa
CANSAT64G1849 Cannabis sativa
CARHR153190 Cardamine hirsuta
CARHR206840 Cardamine hirsuta
CARHR275470 Cardamine hirsuta
Carub.0006s0501 Capsella rubella
Carub.0008s2237 Capsella rubella
Ca_00240_v3 Cicer arietinum L.
Ca_22306_v3 Cicer arietinum L.
Ca_30899_v3 Cicer arietinum L.
CBR_g21203 Chara braunii
Cc00_g15500 Coffea canephora
Cc00_g24330 Coffea canephora
CDE06G0566 Ceratophyllum demersum
CDE07G1730 Ceratophyllum demersum
Cfa013600 Carpinus fangiana
Ciclev10012134m.g Citrus clementina
Ciclev10032174m.g Citrus clementina
CiPaw.07G183400 Carya illinoinensis
CiPaw.08G042600 Carya illinoinensis
CiPaw.10G011800 Carya illinoinensis
ClCG01G004840 Citrullus lanatus
ClCG04G010140 Citrullus lanatus
COL.COLO4_29684 Corchorus olitorius
COL.COLO4_37312 Corchorus olitorius
Cpa.g.sc104.102 Carica papaya
Cpa.g.sc13.235 Carica papaya
Cre06.g279500 Chlamydomonas reinhardtii
CsaV3_5G005060 Cucumis sativus L.
CsaV3_6G040750 Cucumis sativus L.
CSS0015800 Camellia sinensis var. sinensis
CSS0027087 Camellia sinensis var. sinensis
CSS0035824 Camellia sinensis var. sinensis
DCAR_009172 Daucus carota
DCAR_009463 Daucus carota
DCAR_020166 Daucus carota
Dinv16882 Davidia involucrata
Dinv16883 Davidia involucrata
Dinv21176 Davidia involucrata
Dinv34541 Davidia involucrata
Duzib093G0223 Durio zibethinus
Duzib205G0930 Durio zibethinus
ECA238G4179 Erigeron canadensis
EL10Ac2g03315 Beta vulgaris
EL10Ac7g16885 Beta vulgaris
Eucgr.A02931 Eucalyptus grandis
Eucgr.K02565 Eucalyptus grandis
FAN01G1642 Fragaria x ananassa
FAN02G3184 Fragaria x ananassa
FAN03G3365 Fragaria x ananassa
FAN05G2477 Fragaria x ananassa
FAN06G2179 Fragaria x ananassa
FAN10G1911 Fragaria x ananassa
FAN14G2941 Fragaria x ananassa
FvH4_6g19330 Fragaria vesca
FvH4_7g26730 Fragaria vesca
Glyma.02G201600 Glycine max
Glyma.09G233300 Glycine max
Glyma.10G074900 Glycine max
Glyma.12G003500 Glycine max
Gohir.A03G060900 Gossypium hirsutum
Gohir.A07G044100 Gossypium hirsutum
Gohir.D03G105200 Gossypium hirsutum
Gohir.D04G097500 Gossypium hirsutum
Gohir.D07G048600 Gossypium hirsutum
Gorai.001G051800 Gossypium raimondii
Gorai.003G111300 Gossypium raimondii
Gorai.009G400100 Gossypium raimondii
GSVIVG01013852001 Vitis vinifera
GSVIVG01013859001 Vitis vinifera
GSVIVG01033879001 Vitis vinifera
HanXRQChr05g0148891 Helianthus annuus
HanXRQChr08g0229751 Helianthus annuus
HanXRQChr14g0461081 Helianthus annuus
Haze_22222 Corylus avellana
Hma1.2p1_0502F.1_g167860 Hydrangea macrophylla
Hma1.2p1_2119F.1_g314390 Hydrangea macrophylla
HPP92_014642 Vanilla planifolia
Hund12419 Selenicereus undatus
Hund19905 Selenicereus undatus
Lalb_Chr02g0154811 Lupinus albus
Lalb_Chr06g0172461 Lupinus albus
Lalb_Chr15g0080001 Lupinus albus
Lj2C141T10 Lonicera japonica
Lj3g0014569 Lotus japonicus
Lj5g0021688 Lotus japonicus
Lj8A48T41 Lonicera japonica
Lsat_1_v5_gn_2_127180 Lactuca sativa
Lsat_1_v5_gn_9_21061 Lactuca sativa
Manes.06G130100 Manihot esculenta
Manes.09G053200 Manihot esculenta
Manes.14G040300 Manihot esculenta
Manes.14G040800 Manihot esculenta
Mapoly0127s0045 Marchantia polymorpha
MBI03_g02703_MAGBIO Magnolia biondii
MBI04_g13849_MAGBIO Magnolia biondii
MBI17_g29778_MAGBIO Magnolia biondii
MBI17_g39892_MAGBIO Magnolia biondii
MCO05G099 Micromonas commoda
MD01G1175600 Malus domestica
MD02G1252400 Malus domestica
MD04G1149100 Malus domestica
MD07G1241900 Malus domestica
MD07G1242900 Malus domestica
MD07G1243400 Malus domestica
MD07G1243800 Malus domestica
MD07G1243900 Malus domestica
MD07G1244500 Malus domestica
MD07G1245000 Malus domestica
MD07G1245500 Malus domestica
MD07G1245900 Malus domestica
MD12G1029100 Malus domestica
MD14G1029300 Malus domestica
MD14G1029400 Malus domestica
Medtr1g059670 Medicago truncatula
Medtr4g035650 Medicago truncatula
MELO3C005449.2 Cucumis melo
MELO3C024554.2 Cucumis melo
Migut.F00540 Erythranthe guttata
Migut.F01209 Erythranthe guttata
Migut.L01799 Erythranthe guttata
MSTRG.10377 Avicennia marina
MSTRG.148 Avicennia marina
MSTRG.8401 Avicennia marina
Nitab4.5_0000103g0370 Nicotiana tabacum
Nitab4.5_0001875g0050 Nicotiana tabacum
Nitab4.5_0010058g0020 Nicotiana tabacum
Nn1g00775 Nelumbo nucifera
Nn6g33771 Nelumbo nucifera
Nn6g34829 Nelumbo nucifera
Oeu006077.1 Olea europaea
Oeu006078.1 Olea europaea
Oeu007007.1 Olea europaea
Oeu007197.2 Olea europaea
Oeu026454.1 Olea europaea
Os02g0535000 Oryza sativa ssp. japonica
Os02g0651300 Oryza sativa ssp. japonica
Peaxi162Scf00069g00078 Petunia axillaris
Peaxi162Scf00073g01726 Petunia axillaris
PGR042G3357 Punica granatum
PGR142G2253 Punica granatum
PGSC0003DMG400008864 Solanum tuberosum
Phvul.011G004200 Phaseolus vulgaris
Potri.006G210500 Populus trichocarpa
Potri.012G114200 Populus trichocarpa
Pp3c19_22560 Physcomitrium patens
Pp3c2_8420 Physcomitrium patens
PRCOL_00000963 Prasinoderma coloniale
Prupe.2G270800 Prunus persica
Prupe.7G102500 Prunus persica
Psat0s883g0080 Pisum sativum
Psat6g084320 Pisum sativum
PSO339G4689 Papaver somniferum
PSO675G4492 Papaver somniferum
PSO732G0346 Papaver somniferum
QL07p038348 Quercus lobata
QL09p027448 Quercus lobata
RcHm_v2.0_Chr1g0373321 Rosa chinensis
RcHm_v2.0_Chr2g0122341 Rosa chinensis
RcHm_v2.0_Chr3g0455551 Rosa chinensis
RcHm_v2.0_Chr3g0474581 Rosa chinensis
Rhsim03G0070600 Rhododendron simsii
Rhsim03G0072900 Rhododendron simsii
Rhsim03G0158100 Rhododendron simsii
Rhsim03G0158800 Rhododendron simsii
Sabra06G0162000 Salix brachista
Sabra12G0083100 Salix brachista
SalBow3G0611 Salvia bowleyana
SalBow5G3959 Salvia bowleyana
Sc09g0007810 Simmondsia chinensis
Sc10g0005130 Simmondsia chinensis
Sed0017336 Sechium edule
Sed0025691 Sechium edule
SEGI_02843 Sequoiadendron giganteum
SEGI_19748 Sequoiadendron giganteum
SEGI_31271 Sequoiadendron giganteum
SGA_v2.0_scaffold136G34986 Striga asiatica
SGA_v2.0_scaffold184G39983 Striga asiatica
SGA_v2.0_scaffold44G16588 Striga asiatica
SMO117G0043 Selaginella moellendorffii
SMO141G0290 Selaginella moellendorffii
SMO164G0241 Selaginella moellendorffii
SMO164G0252 Selaginella moellendorffii
Solyc03g093830.3 Solanum lycopersicum
Solyc09g010110.3 Solanum lycopersicum
Sopen03g024720 Solanum pennellii
Sopen09g004850 Solanum pennellii
Sp2g24880 Schrenkiella parvula
Sp6g36770 Schrenkiella parvula
TAR369G0951 Trochodendron aralioides
TAR375G0069 Trochodendron aralioides
TAR375G0356 Trochodendron aralioides
TAR375G0388 Trochodendron aralioides
TAR629G1116 Trochodendron aralioides
THA.LOC104801670 Tarenaya hassleriana
THA.LOC104816594 Tarenaya hassleriana
THA.LOC104818298 Tarenaya hassleriana
Thecc.03G145800 Theobroma cacao
Thecc.05G093900 Theobroma cacao
Thhalv10004649m.g Eutrema salsugineum
Thhalv10014141m.g Eutrema salsugineum
TPR.G14796 Trifolium pratense
TPR.G15132 Trifolium pratense
TWI39G0832 Tripterygium wilfordii
TWI74G1148 Tripterygium wilfordii
unitig_0.g264 Utricularia gibba
unitig_22.g5754 Utricularia gibba
vmacro06847 Vaccinium macrocarpon
vmacro07444 Vaccinium macrocarpon
VMungo1127G2313 Vigna mungo
Zm00001eb242870 Zea mays
Zm00001eb249060 Zea mays

User provided reference genes

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